HEADER SPLICING 15-FEB-18 6FRH TITLE CRYSTAL STRUCTURE OF SSP DNAB MINI-INTEIN VARIANT M86 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATIVE DNA HELICASE,REPLICATIVE DNA HELICASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.4.12,3.6.4.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP., SYNECHOCYSTIS SP. (STRAIN SOURCE 3 PCC 6803 / KAZUSA); SOURCE 4 ORGANISM_TAXID: 1111708; SOURCE 5 STRAIN: PCC 6803 / KAZUSA; SOURCE 6 GENE: DNAB, SLR0833; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTEIN, PROTEIN SPLICING, HINT DOMAIN FOLD, PRE-SPLICING, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR M.A.POPP,W.BLANKENFELDT,M.E.GAZDAG,J.J.C.MATERN,H.D.MOOTZ REVDAT 4 17-JAN-24 6FRH 1 REMARK REVDAT 3 20-FEB-19 6FRH 1 AUTHOR REVDAT 2 13-FEB-19 6FRH 1 JRNL REVDAT 1 30-JAN-19 6FRH 0 JRNL AUTH K.FRIEDEL,M.A.POPP,J.C.J.MATERN,E.M.GAZDAG,I.V.THIEL, JRNL AUTH 2 G.VOLKMANN,W.BLANKENFELDT,H.D.MOOTZ JRNL TITL A FUNCTIONAL INTERPLAY BETWEEN INTEIN AND EXTEIN SEQUENCES JRNL TITL 2 IN PROTEIN SPLICING COMPENSATES FOR THE ESSENTIAL BLOCK B JRNL TITL 3 HISTIDINE. JRNL REF CHEM SCI V. 10 239 2019 JRNL REFN ISSN 2041-6520 JRNL PMID 30713635 JRNL DOI 10.1039/C8SC01074A REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2733 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 17875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9552 - 3.6872 0.97 2843 147 0.1923 0.2154 REMARK 3 2 3.6872 - 2.9273 0.97 2815 154 0.2046 0.2132 REMARK 3 3 2.9273 - 2.5575 0.97 2831 154 0.2322 0.2662 REMARK 3 4 2.5575 - 2.3237 0.96 2864 127 0.2414 0.2688 REMARK 3 5 2.3237 - 2.1572 0.97 2804 164 0.2664 0.2786 REMARK 3 6 2.1572 - 2.0300 0.96 2836 136 0.2913 0.3221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2435 REMARK 3 ANGLE : 0.492 3306 REMARK 3 CHIRALITY : 0.045 398 REMARK 3 PLANARITY : 0.002 416 REMARK 3 DIHEDRAL : 13.409 1478 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7448 13.1518 -22.2811 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1657 REMARK 3 T33: 0.2190 T12: 0.0110 REMARK 3 T13: 0.0110 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.0214 L22: 0.0384 REMARK 3 L33: 0.0263 L12: 0.0002 REMARK 3 L13: -0.0296 L23: -0.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.0734 S13: -0.1640 REMARK 3 S21: -0.0036 S22: -0.0930 S23: 0.0088 REMARK 3 S31: 0.0166 S32: 0.0532 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 148 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9009 17.2172 -22.6037 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.1492 REMARK 3 T33: 0.1288 T12: -0.0326 REMARK 3 T13: -0.0114 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.1276 L22: 0.0469 REMARK 3 L33: 0.1055 L12: -0.0428 REMARK 3 L13: -0.0987 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.1013 S12: -0.0153 S13: 0.0356 REMARK 3 S21: 0.0674 S22: 0.0303 S23: -0.1099 REMARK 3 S31: -0.0407 S32: -0.1243 S33: 0.0218 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -5 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4449 0.0329 -9.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.1609 REMARK 3 T33: 0.2124 T12: 0.0088 REMARK 3 T13: 0.0243 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.0261 L22: 0.0184 REMARK 3 L33: 0.0301 L12: -0.0077 REMARK 3 L13: 0.0250 L23: 0.0105 REMARK 3 S TENSOR REMARK 3 S11: -0.0954 S12: -0.0012 S13: 0.0213 REMARK 3 S21: -0.1139 S22: -0.0458 S23: -0.0249 REMARK 3 S31: 0.1001 S32: -0.0483 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6416 9.2978 3.8642 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.2296 REMARK 3 T33: 0.2625 T12: -0.0101 REMARK 3 T13: -0.0444 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 0.2280 L22: 0.0180 REMARK 3 L33: 0.5468 L12: -0.0098 REMARK 3 L13: 0.0290 L23: -0.1023 REMARK 3 S TENSOR REMARK 3 S11: -0.2468 S12: -0.2768 S13: 0.3933 REMARK 3 S21: 0.1525 S22: 0.0761 S23: -0.1805 REMARK 3 S31: -0.4009 S32: -0.0591 S33: 0.0082 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7730 1.0224 -8.5138 REMARK 3 T TENSOR REMARK 3 T11: 0.1583 T22: 0.1370 REMARK 3 T33: 0.2491 T12: -0.0300 REMARK 3 T13: -0.0158 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.0391 L22: 0.0479 REMARK 3 L33: 0.3718 L12: 0.0266 REMARK 3 L13: -0.0027 L23: 0.0321 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: -0.0694 S13: 0.3314 REMARK 3 S21: -0.0551 S22: -0.0079 S23: 0.1239 REMARK 3 S31: 0.1211 S32: -0.1350 S33: 0.0074 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0460 -8.4398 -0.5027 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.1464 REMARK 3 T33: 0.1548 T12: -0.0114 REMARK 3 T13: 0.0295 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.0737 L22: 0.2391 REMARK 3 L33: 0.4106 L12: 0.0162 REMARK 3 L13: 0.1254 L23: -0.2024 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: -0.1415 S13: -0.0537 REMARK 3 S21: -0.1924 S22: -0.0588 S23: -0.0520 REMARK 3 S31: 0.4428 S32: -0.0413 S33: 0.0070 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4736 -1.2371 17.5958 REMARK 3 T TENSOR REMARK 3 T11: 0.5246 T22: 0.4639 REMARK 3 T33: 0.3767 T12: -0.0463 REMARK 3 T13: 0.0128 T23: -0.1304 REMARK 3 L TENSOR REMARK 3 L11: -0.0003 L22: 0.0028 REMARK 3 L33: 0.0136 L12: -0.0015 REMARK 3 L13: -0.0023 L23: 0.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.1354 S12: 0.0689 S13: 0.0447 REMARK 3 S21: 0.1245 S22: 0.0150 S23: 0.0078 REMARK 3 S31: -0.0020 S32: 0.1891 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9912 -8.6646 0.2990 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.1816 REMARK 3 T33: 0.1662 T12: -0.0493 REMARK 3 T13: -0.0367 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.0861 L22: 0.1076 REMARK 3 L33: 0.1684 L12: 0.0189 REMARK 3 L13: -0.1059 L23: 0.0515 REMARK 3 S TENSOR REMARK 3 S11: -0.0592 S12: -0.1889 S13: 0.0638 REMARK 3 S21: 0.0410 S22: -0.0105 S23: 0.1012 REMARK 3 S31: 0.1235 S32: -0.1314 S33: -0.0524 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5106 4.5587 -3.9864 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.1336 REMARK 3 T33: 0.2534 T12: -0.0357 REMARK 3 T13: -0.0082 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.0637 L22: 0.0743 REMARK 3 L33: 0.0224 L12: -0.0758 REMARK 3 L13: 0.0327 L23: -0.0418 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.0480 S13: 0.1037 REMARK 3 S21: -0.0090 S22: 0.0412 S23: -0.0173 REMARK 3 S31: 0.0116 S32: -0.0172 S33: 0.0053 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -5 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4297 19.1733 -15.8137 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.1506 REMARK 3 T33: 0.2015 T12: -0.0261 REMARK 3 T13: -0.0644 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.1966 L22: 0.0072 REMARK 3 L33: 0.2751 L12: -0.0196 REMARK 3 L13: -0.2351 L23: 0.0328 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.1277 S13: 0.0214 REMARK 3 S21: 0.1045 S22: 0.0369 S23: -0.1732 REMARK 3 S31: -0.1648 S32: -0.1323 S33: 0.0245 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3720 8.5108 -28.4172 REMARK 3 T TENSOR REMARK 3 T11: 0.1699 T22: 0.2471 REMARK 3 T33: 0.2693 T12: -0.0237 REMARK 3 T13: 0.0476 T23: -0.0843 REMARK 3 L TENSOR REMARK 3 L11: 0.4647 L22: 0.0623 REMARK 3 L33: 0.3392 L12: 0.0851 REMARK 3 L13: -0.3001 L23: -0.1165 REMARK 3 S TENSOR REMARK 3 S11: -0.2354 S12: 0.0948 S13: -0.4906 REMARK 3 S21: -0.1136 S22: -0.1865 S23: 0.0535 REMARK 3 S31: 0.4572 S32: 0.0685 S33: -0.2554 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3644 13.6855 -30.7934 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.3015 REMARK 3 T33: 0.2082 T12: -0.0327 REMARK 3 T13: 0.0383 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.0156 L22: 0.0138 REMARK 3 L33: 0.0049 L12: -0.0029 REMARK 3 L13: -0.0101 L23: -0.0102 REMARK 3 S TENSOR REMARK 3 S11: -0.0917 S12: 0.1408 S13: -0.3223 REMARK 3 S21: 0.0654 S22: -0.0003 S23: 0.0617 REMARK 3 S31: 0.1214 S32: 0.3000 S33: 0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6252 18.6202 -17.4147 REMARK 3 T TENSOR REMARK 3 T11: 0.1668 T22: 0.1077 REMARK 3 T33: 0.1561 T12: -0.0006 REMARK 3 T13: 0.0200 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.0643 L22: 0.1042 REMARK 3 L33: 0.2257 L12: 0.0191 REMARK 3 L13: 0.0371 L23: 0.1604 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0298 S13: -0.0341 REMARK 3 S21: 0.0143 S22: -0.1072 S23: 0.1046 REMARK 3 S31: 0.0229 S32: -0.0769 S33: -0.0257 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6737 25.7198 -25.8776 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: -0.0818 REMARK 3 T33: -0.0523 T12: 0.3120 REMARK 3 T13: -0.1316 T23: 0.2333 REMARK 3 L TENSOR REMARK 3 L11: 0.2993 L22: 0.1797 REMARK 3 L33: 0.0502 L12: 0.0171 REMARK 3 L13: 0.1192 L23: 0.0304 REMARK 3 S TENSOR REMARK 3 S11: 0.3763 S12: 0.2814 S13: 0.1128 REMARK 3 S21: -0.2171 S22: -0.0737 S23: 0.0231 REMARK 3 S31: -0.0564 S32: -0.1690 S33: 0.2120 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1201 28.4713 -24.3045 REMARK 3 T TENSOR REMARK 3 T11: 0.2552 T22: 0.2225 REMARK 3 T33: 0.1675 T12: -0.0170 REMARK 3 T13: 0.0199 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.0429 L22: 0.0294 REMARK 3 L33: 0.0563 L12: -0.0107 REMARK 3 L13: -0.0321 L23: -0.0243 REMARK 3 S TENSOR REMARK 3 S11: 0.2096 S12: 0.0802 S13: 0.1248 REMARK 3 S21: -0.0004 S22: -0.2224 S23: -0.2620 REMARK 3 S31: -0.4611 S32: 0.0365 S33: -0.0016 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5944 20.5337 -41.7489 REMARK 3 T TENSOR REMARK 3 T11: 0.4735 T22: 0.3465 REMARK 3 T33: 0.0898 T12: 0.1537 REMARK 3 T13: 0.0887 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.0137 L22: 0.0189 REMARK 3 L33: 0.0536 L12: 0.0139 REMARK 3 L13: -0.0141 L23: -0.0055 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.0205 S13: -0.0046 REMARK 3 S21: 0.0568 S22: 0.0425 S23: 0.0073 REMARK 3 S31: 0.0682 S32: -0.0842 S33: 0.0776 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0834 27.8990 -25.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.2733 T22: 0.1742 REMARK 3 T33: 0.1192 T12: 0.0630 REMARK 3 T13: 0.0613 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.0201 L22: 0.1267 REMARK 3 L33: 0.5139 L12: 0.0337 REMARK 3 L13: 0.0219 L23: 0.0389 REMARK 3 S TENSOR REMARK 3 S11: 0.1353 S12: 0.1304 S13: 0.0455 REMARK 3 S21: -0.2206 S22: -0.1279 S23: 0.1062 REMARK 3 S31: -0.1691 S32: -0.2730 S33: -0.0953 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID -5 THROUGH 35 OR REMARK 3 RESID 37 THROUGH 43 OR (RESID 44 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 45 THROUGH 52 OR REMARK 3 (RESID 53 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 54 REMARK 3 THROUGH 71 OR RESID 73 THROUGH 89 OR REMARK 3 (RESID 90 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 91 REMARK 3 THROUGH 99 OR RESID 108 OR RESID 116 REMARK 3 THROUGH 158)) REMARK 3 SELECTION : (CHAIN B AND (RESID -5 THROUGH 34 OR REMARK 3 (RESID 35 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 37 REMARK 3 THROUGH 59 OR (RESID 60 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 61 THROUGH 71 OR RESID 73 REMARK 3 THROUGH 112 OR (RESID 113 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 114 OR RESID 116 THROUGH 158)) REMARK 3 ATOM PAIRS NUMBER : 1706 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 37.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.75700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MI8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.6, 22 % PEG4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 110 REMARK 465 GLU A 111 REMARK 465 LYS A 112 REMARK 465 LEU A 113 REMARK 465 PRO A 114 REMARK 465 GLN A 115 REMARK 465 LEU A 161 REMARK 465 GLY A 162 REMARK 465 GLY A 163 REMARK 465 LYS B 98 REMARK 465 LEU B 99 REMARK 465 GLU B 100 REMARK 465 SER B 101 REMARK 465 SER B 102 REMARK 465 SER B 103 REMARK 465 LEU B 104 REMARK 465 GLN B 105 REMARK 465 LEU B 106 REMARK 465 ALA B 107 REMARK 465 PRO B 108 REMARK 465 GLU B 109 REMARK 465 ILE B 110 REMARK 465 GLU B 111 REMARK 465 ASP B 159 REMARK 465 LYS B 160 REMARK 465 LEU B 161 REMARK 465 GLY B 162 REMARK 465 GLY B 163 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LEU A 99 CG CD1 CD2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 SER A 101 OG REMARK 470 SER A 102 OG REMARK 470 LEU A 104 CG CD1 CD2 REMARK 470 GLN A 105 CG CD OE1 NE2 REMARK 470 LEU A 106 CG CD1 CD2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 GLN A 158 CG CD OE1 NE2 REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 GLN B 158 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 116 O HOH B 201 2.05 REMARK 500 OD2 ASP A 136 O HOH A 201 2.10 REMARK 500 OE1 GLU A 91 O HOH A 202 2.12 REMARK 500 OD2 ASP A 85 O HOH A 203 2.14 REMARK 500 O LEU A 23 O HOH A 204 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 90 -2.72 74.62 REMARK 500 LEU A 106 78.44 -108.66 REMARK 500 LYS B 90 -2.49 75.22 REMARK 500 LEU B 113 73.30 57.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FRE RELATED DB: PDB REMARK 900 6FRE CONTAINS A MUTANT OF THIS PROTEIN REMARK 900 RELATED ID: 6FRG RELATED DB: PDB REMARK 900 6FRG CONTAINS A MUTANT OF THIS PROTEIN DBREF 6FRH A 2 106 UNP Q55418 DNAB_SYNY3 382 486 DBREF 6FRH A 107 159 UNP Q55418 DNAB_SYNY3 762 814 DBREF 6FRH B 2 106 UNP Q55418 DNAB_SYNY3 382 486 DBREF 6FRH B 107 159 UNP Q55418 DNAB_SYNY3 762 814 SEQADV 6FRH MET A -6 UNP Q55418 INITIATING METHIONINE SEQADV 6FRH LEU A -5 UNP Q55418 EXPRESSION TAG SEQADV 6FRH ARG A -4 UNP Q55418 EXPRESSION TAG SEQADV 6FRH GLU A -3 UNP Q55418 EXPRESSION TAG SEQADV 6FRH SER A -2 UNP Q55418 EXPRESSION TAG SEQADV 6FRH GLY A -1 UNP Q55418 EXPRESSION TAG SEQADV 6FRH ALA A 1 UNP Q55418 EXPRESSION TAG SEQADV 6FRH PRO A 18 UNP Q55418 SER 398 ENGINEERED MUTATION SEQADV 6FRH GLY A 24 UNP Q55418 ASP 404 ENGINEERED MUTATION SEQADV 6FRH THR A 58 UNP Q55418 ILE 438 ENGINEERED MUTATION SEQADV 6FRH ALA A 107 UNP Q55418 SER 762 ENGINEERED MUTATION SEQADV 6FRH PRO A 114 UNP Q55418 SER 769 ENGINEERED MUTATION SEQADV 6FRH PRO A 122 UNP Q55418 SER 777 ENGINEERED MUTATION SEQADV 6FRH LEU A 142 UNP Q55418 PRO 797 ENGINEERED MUTATION SEQADV 6FRH ARG A 143 UNP Q55418 HIS 798 ENGINEERED MUTATION SEQADV 6FRH ALA A 154 UNP Q55418 ASN 809 ENGINEERED MUTATION SEQADV 6FRH LYS A 160 UNP Q55418 EXPRESSION TAG SEQADV 6FRH LEU A 161 UNP Q55418 EXPRESSION TAG SEQADV 6FRH GLY A 162 UNP Q55418 EXPRESSION TAG SEQADV 6FRH GLY A 163 UNP Q55418 EXPRESSION TAG SEQADV 6FRH MET B -6 UNP Q55418 INITIATING METHIONINE SEQADV 6FRH LEU B -5 UNP Q55418 EXPRESSION TAG SEQADV 6FRH ARG B -4 UNP Q55418 EXPRESSION TAG SEQADV 6FRH GLU B -3 UNP Q55418 EXPRESSION TAG SEQADV 6FRH SER B -2 UNP Q55418 EXPRESSION TAG SEQADV 6FRH GLY B -1 UNP Q55418 EXPRESSION TAG SEQADV 6FRH ALA B 1 UNP Q55418 EXPRESSION TAG SEQADV 6FRH PRO B 18 UNP Q55418 SER 398 CONFLICT SEQADV 6FRH GLY B 24 UNP Q55418 ASP 404 CONFLICT SEQADV 6FRH THR B 58 UNP Q55418 ILE 438 CONFLICT SEQADV 6FRH ALA B 107 UNP Q55418 SER 762 CONFLICT SEQADV 6FRH PRO B 114 UNP Q55418 SER 769 CONFLICT SEQADV 6FRH PRO B 122 UNP Q55418 SER 777 CONFLICT SEQADV 6FRH LEU B 142 UNP Q55418 PRO 797 CONFLICT SEQADV 6FRH ARG B 143 UNP Q55418 HIS 798 CONFLICT SEQADV 6FRH ALA B 154 UNP Q55418 ASN 809 CONFLICT SEQADV 6FRH LYS B 160 UNP Q55418 EXPRESSION TAG SEQADV 6FRH LEU B 161 UNP Q55418 EXPRESSION TAG SEQADV 6FRH GLY B 162 UNP Q55418 EXPRESSION TAG SEQADV 6FRH GLY B 163 UNP Q55418 EXPRESSION TAG SEQRES 1 A 169 MET LEU ARG GLU SER GLY ALA ILE SER GLY ASP SER LEU SEQRES 2 A 169 ILE SER LEU ALA SER THR GLY LYS ARG VAL PRO ILE LYS SEQRES 3 A 169 ASP LEU LEU GLY GLU LYS ASP PHE GLU ILE TRP ALA ILE SEQRES 4 A 169 ASN GLU GLN THR MET LYS LEU GLU SER ALA LYS VAL SER SEQRES 5 A 169 ARG VAL PHE CYS THR GLY LYS LYS LEU VAL TYR THR LEU SEQRES 6 A 169 LYS THR ARG LEU GLY ARG THR ILE LYS ALA THR ALA ASN SEQRES 7 A 169 HIS ARG PHE LEU THR ILE ASP GLY TRP LYS ARG LEU ASP SEQRES 8 A 169 GLU LEU SER LEU LYS GLU HIS ILE ALA LEU PRO ARG LYS SEQRES 9 A 169 LEU GLU SER SER SER LEU GLN LEU ALA PRO GLU ILE GLU SEQRES 10 A 169 LYS LEU PRO GLN SER ASP ILE TYR TRP ASP PRO ILE VAL SEQRES 11 A 169 SER ILE THR GLU THR GLY VAL GLU GLU VAL PHE ASP LEU SEQRES 12 A 169 THR VAL PRO GLY LEU ARG ASN PHE VAL ALA ASN ASP ILE SEQRES 13 A 169 ILE VAL HIS ALA SER ILE GLU GLN ASP LYS LEU GLY GLY SEQRES 1 B 169 MET LEU ARG GLU SER GLY ALA ILE SER GLY ASP SER LEU SEQRES 2 B 169 ILE SER LEU ALA SER THR GLY LYS ARG VAL PRO ILE LYS SEQRES 3 B 169 ASP LEU LEU GLY GLU LYS ASP PHE GLU ILE TRP ALA ILE SEQRES 4 B 169 ASN GLU GLN THR MET LYS LEU GLU SER ALA LYS VAL SER SEQRES 5 B 169 ARG VAL PHE CYS THR GLY LYS LYS LEU VAL TYR THR LEU SEQRES 6 B 169 LYS THR ARG LEU GLY ARG THR ILE LYS ALA THR ALA ASN SEQRES 7 B 169 HIS ARG PHE LEU THR ILE ASP GLY TRP LYS ARG LEU ASP SEQRES 8 B 169 GLU LEU SER LEU LYS GLU HIS ILE ALA LEU PRO ARG LYS SEQRES 9 B 169 LEU GLU SER SER SER LEU GLN LEU ALA PRO GLU ILE GLU SEQRES 10 B 169 LYS LEU PRO GLN SER ASP ILE TYR TRP ASP PRO ILE VAL SEQRES 11 B 169 SER ILE THR GLU THR GLY VAL GLU GLU VAL PHE ASP LEU SEQRES 12 B 169 THR VAL PRO GLY LEU ARG ASN PHE VAL ALA ASN ASP ILE SEQRES 13 B 169 ILE VAL HIS ALA SER ILE GLU GLN ASP LYS LEU GLY GLY FORMUL 3 HOH *177(H2 O) HELIX 1 AA1 LYS A 20 LEU A 23 5 4 HELIX 2 AA2 ASP A 85 LEU A 87 5 3 HELIX 3 AA3 LYS B 20 LEU B 23 5 4 HELIX 4 AA4 ASP B 85 LEU B 87 5 3 SHEET 1 AA1 6 HIS A 92 PRO A 96 0 SHEET 2 AA1 6 ILE A 118 THR A 138 -1 O TYR A 119 N LEU A 95 SHEET 3 AA1 6 ARG A 47 THR A 61 -1 N THR A 58 O THR A 127 SHEET 4 AA1 6 THR A 66 ALA A 69 -1 O ALA A 69 N TYR A 57 SHEET 5 AA1 6 ILE A 2 SER A 3 -1 N SER A 3 O LYS A 68 SHEET 6 AA1 6 ILE A 118 THR A 138 -1 O PHE A 135 N ILE A 2 SHEET 1 AA2 2 LEU A 7 SER A 9 0 SHEET 2 AA2 2 ARG A 16 PRO A 18 -1 O VAL A 17 N ILE A 8 SHEET 1 AA3 2 PHE A 28 ASN A 34 0 SHEET 2 AA3 2 LYS A 39 VAL A 45 -1 O GLU A 41 N ALA A 32 SHEET 1 AA4 2 ARG A 74 THR A 77 0 SHEET 2 AA4 2 GLY A 80 ARG A 83 -1 O LYS A 82 N PHE A 75 SHEET 1 AA5 2 ASN A 144 ALA A 147 0 SHEET 2 AA5 2 ILE A 150 HIS A 153 -1 O VAL A 152 N PHE A 145 SHEET 1 AA6 6 HIS B 92 PRO B 96 0 SHEET 2 AA6 6 ILE B 118 THR B 138 -1 O TYR B 119 N LEU B 95 SHEET 3 AA6 6 ARG B 47 THR B 61 -1 N THR B 58 O THR B 127 SHEET 4 AA6 6 THR B 66 ALA B 69 -1 O ALA B 69 N TYR B 57 SHEET 5 AA6 6 ILE B 2 SER B 3 -1 N SER B 3 O LYS B 68 SHEET 6 AA6 6 ILE B 118 THR B 138 -1 O PHE B 135 N ILE B 2 SHEET 1 AA7 2 LEU B 7 SER B 9 0 SHEET 2 AA7 2 ARG B 16 PRO B 18 -1 O VAL B 17 N ILE B 8 SHEET 1 AA8 2 PHE B 28 ASN B 34 0 SHEET 2 AA8 2 LYS B 39 VAL B 45 -1 O GLU B 41 N ALA B 32 SHEET 1 AA9 2 ARG B 74 THR B 77 0 SHEET 2 AA9 2 GLY B 80 ARG B 83 -1 O LYS B 82 N PHE B 75 SHEET 1 AB1 2 ASN B 144 ALA B 147 0 SHEET 2 AB1 2 ILE B 150 HIS B 153 -1 O VAL B 152 N PHE B 145 CRYST1 34.635 40.941 57.906 84.37 83.45 65.00 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028873 -0.013460 -0.002574 0.00000 SCALE2 0.000000 0.026949 -0.001495 0.00000 SCALE3 0.000000 0.000000 0.017410 0.00000