HEADER HYDROLASE 18-FEB-18 6FRZ TITLE PHOSPHOTRIESTERASE PTE_A53_7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARATHION HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOTRIESTERASE,PTE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 GENE: OPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOENZYME, TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.DYM,N.AGGARWAL,S.ALBECK,T.UNGER,S.HAMER ROGOTNER,I.SILMAN,H.LEADER, AUTHOR 2 Y.ASHANI,M.GOLDSMITH,P.GREISEN,D.TAWFIK,L.J.SUSSMAN REVDAT 2 17-JAN-24 6FRZ 1 LINK REVDAT 1 13-MAR-19 6FRZ 0 JRNL AUTH O.DYM,N.AGGARWAL,S.ALBECK,T.UNGER,S.HAMER ROGOTNER,I.SILMAN, JRNL AUTH 2 H.LEADER,Y.ASHANI,M.GOLDSMITH,P.GREISEN,D.TAWFIK,L.J.SUSSMAN JRNL TITL PHOSPHOTRIESTERASE PTE_A53_7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1-2575_1692: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 73186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1952 - 4.8756 1.00 2731 152 0.1564 0.1634 REMARK 3 2 4.8756 - 3.8751 1.00 2690 143 0.1368 0.1506 REMARK 3 3 3.8751 - 3.3867 1.00 2687 139 0.1554 0.1560 REMARK 3 4 3.3867 - 3.0778 0.99 2669 156 0.1789 0.2001 REMARK 3 5 3.0778 - 2.8575 0.99 2691 123 0.1716 0.2027 REMARK 3 6 2.8575 - 2.6893 1.00 2683 154 0.1682 0.1771 REMARK 3 7 2.6893 - 2.5548 0.99 2662 124 0.1644 0.1729 REMARK 3 8 2.5548 - 2.4437 1.00 2635 156 0.1639 0.1959 REMARK 3 9 2.4437 - 2.3497 1.00 2696 147 0.1633 0.1644 REMARK 3 10 2.3497 - 2.2686 1.00 2639 157 0.1598 0.1940 REMARK 3 11 2.2686 - 2.1978 1.00 2664 155 0.1503 0.1643 REMARK 3 12 2.1978 - 2.1350 1.00 2677 146 0.1590 0.1946 REMARK 3 13 2.1350 - 2.0788 1.00 2665 130 0.1606 0.1944 REMARK 3 14 2.0788 - 2.0281 1.00 2664 145 0.1705 0.2134 REMARK 3 15 2.0281 - 1.9820 1.00 2713 131 0.1679 0.1989 REMARK 3 16 1.9820 - 1.9399 1.00 2619 160 0.1593 0.1856 REMARK 3 17 1.9399 - 1.9011 1.00 2713 128 0.1583 0.1916 REMARK 3 18 1.9011 - 1.8652 1.00 2624 160 0.1575 0.1690 REMARK 3 19 1.8652 - 1.8319 1.00 2718 138 0.1658 0.1832 REMARK 3 20 1.8319 - 1.8009 1.00 2639 135 0.1629 0.2049 REMARK 3 21 1.8009 - 1.7718 1.00 2672 141 0.1755 0.2115 REMARK 3 22 1.7718 - 1.7446 1.00 2670 125 0.1893 0.2322 REMARK 3 23 1.7446 - 1.7189 1.00 2684 151 0.1817 0.2240 REMARK 3 24 1.7189 - 1.6947 1.00 2660 143 0.1589 0.2069 REMARK 3 25 1.6947 - 1.6718 1.00 2692 122 0.1696 0.2090 REMARK 3 26 1.6718 - 1.6501 0.99 2639 129 0.1664 0.2051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5186 REMARK 3 ANGLE : 0.941 7037 REMARK 3 CHIRALITY : 0.053 823 REMARK 3 PLANARITY : 0.006 906 REMARK 3 DIHEDRAL : 6.950 4211 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5415 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73193 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 24.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 15.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26100 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HZY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000 0.05M TRIS PH=7.5, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.56250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 26 REMARK 465 SER A 27 REMARK 465 GLU A 28 REMARK 465 PHE A 29 REMARK 465 ILE A 30 REMARK 465 THR A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 LEU A 362 REMARK 465 ARG A 363 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 SER B 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 81 CD OE1 OE2 REMARK 470 ARG A 85 NH1 NH2 REMARK 470 ARG A 89 CZ NH1 NH2 REMARK 470 GLN A 148 CD OE1 NE2 REMARK 470 PHE A 203 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 294 NZ REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 ARG A 356 CZ NH1 NH2 REMARK 470 ARG B 67 CD NE CZ NH1 NH2 REMARK 470 ARG B 89 CZ NH1 NH2 REMARK 470 GLU B 132 CD OE1 OE2 REMARK 470 GLN B 148 CD OE1 NE2 REMARK 470 GLN B 173 CG CD OE1 NE2 REMARK 470 ARG B 337 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 169 C FMT B 401 1.60 REMARK 500 NZ LYS A 169 C FMT A 401 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -145.43 -144.23 REMARK 500 TRP A 69 59.78 -145.48 REMARK 500 THR A 128 -167.11 -109.32 REMARK 500 TRP A 131 -145.90 -104.16 REMARK 500 GLU A 159 -132.98 52.56 REMARK 500 TYR A 309 -159.19 -136.22 REMARK 500 SER B 61 -147.42 -140.72 REMARK 500 THR B 128 -167.98 -108.78 REMARK 500 TRP B 131 -144.63 -102.52 REMARK 500 GLU B 159 -132.82 52.09 REMARK 500 TYR B 309 -153.77 -135.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 202 PHE A 203 149.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 119.9 REMARK 620 3 ASP A 301 OD1 81.4 90.4 REMARK 620 4 FMT A 401 O2 98.0 86.6 176.1 REMARK 620 5 E4T A 404 OAF 118.1 121.5 90.6 93.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 ND1 REMARK 620 2 HIS A 230 NE2 98.1 REMARK 620 3 FMT A 401 O1 106.5 111.3 REMARK 620 4 E4T A 404 OAD 97.5 123.2 115.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 HIS B 57 NE2 121.5 REMARK 620 3 ASP B 301 OD1 84.1 85.9 REMARK 620 4 FMT B 401 O2 97.4 89.7 175.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 201 ND1 REMARK 620 2 HIS B 230 NE2 98.4 REMARK 620 3 FMT B 401 O1 104.2 112.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E4T A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FEE RELATED DB: PDB REMARK 900 RELATED ID: 6FEF RELATED DB: PDB REMARK 900 RELATED ID: 6FEI RELATED DB: PDB REMARK 900 RELATED ID: 6FEV RELATED DB: PDB REMARK 900 RELATED ID: 6FFW RELATED DB: PDB REMARK 900 RELATED ID: 6FOR RELATED DB: PDB DBREF 6FRZ A 32 365 UNP P0A434 OPD_BREDI 32 365 DBREF 6FRZ B 32 365 UNP P0A434 OPD_BREDI 32 365 SEQADV 6FRZ ILE A 26 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ SER A 27 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ GLU A 28 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ PHE A 29 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ ILE A 30 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ THR A 31 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ ASN A 32 UNP P0A434 GLY 32 CONFLICT SEQADV 6FRZ SER A 33 UNP P0A434 THR 33 CONFLICT SEQADV 6FRZ ALA A 77 UNP P0A434 LYS 77 CONFLICT SEQADV 6FRZ VAL A 80 UNP P0A434 ALA 80 CONFLICT SEQADV 6FRZ ALA A 106 UNP P0A434 ILE 106 CONFLICT SEQADV 6FRZ GLU A 132 UNP P0A434 PHE 132 CONFLICT SEQADV 6FRZ GLN A 173 UNP P0A434 THR 173 CONFLICT SEQADV 6FRZ ARG A 185 UNP P0A434 LYS 185 CONFLICT SEQADV 6FRZ PHE A 203 UNP P0A434 ALA 203 CONFLICT SEQADV 6FRZ GLY A 254 UNP P0A434 HIS 254 CONFLICT SEQADV 6FRZ ASN A 274 UNP P0A434 ILE 274 CONFLICT SEQADV 6FRZ SER A 319 UNP P0A434 ARG 319 CONFLICT SEQADV 6FRZ ILE B 26 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ SER B 27 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ GLU B 28 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ PHE B 29 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ ILE B 30 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ THR B 31 UNP P0A434 EXPRESSION TAG SEQADV 6FRZ ASN B 32 UNP P0A434 GLY 32 CONFLICT SEQADV 6FRZ SER B 33 UNP P0A434 THR 33 CONFLICT SEQADV 6FRZ ALA B 77 UNP P0A434 LYS 77 CONFLICT SEQADV 6FRZ VAL B 80 UNP P0A434 ALA 80 CONFLICT SEQADV 6FRZ ALA B 106 UNP P0A434 ILE 106 CONFLICT SEQADV 6FRZ GLU B 132 UNP P0A434 PHE 132 CONFLICT SEQADV 6FRZ GLN B 173 UNP P0A434 THR 173 CONFLICT SEQADV 6FRZ ARG B 185 UNP P0A434 LYS 185 CONFLICT SEQADV 6FRZ PHE B 203 UNP P0A434 ALA 203 CONFLICT SEQADV 6FRZ GLY B 254 UNP P0A434 HIS 254 CONFLICT SEQADV 6FRZ ASN B 274 UNP P0A434 ILE 274 CONFLICT SEQADV 6FRZ SER B 319 UNP P0A434 ARG 319 CONFLICT SEQRES 1 A 340 ILE SER GLU PHE ILE THR ASN SER GLY ASP ARG ILE ASN SEQRES 2 A 340 THR VAL ARG GLY PRO ILE THR ILE SER GLU ALA GLY PHE SEQRES 3 A 340 THR LEU THR HIS GLU HIS ILE CYS GLY SER SER ALA GLY SEQRES 4 A 340 PHE LEU ARG ALA TRP PRO GLU PHE PHE GLY SER ARG ALA SEQRES 5 A 340 ALA LEU VAL GLU LYS ALA VAL ARG GLY LEU ARG ARG ALA SEQRES 6 A 340 ARG ALA ALA GLY VAL ARG THR ILE VAL ASP VAL SER THR SEQRES 7 A 340 PHE ASP ALA GLY ARG ASP VAL SER LEU LEU ALA GLU VAL SEQRES 8 A 340 SER ARG ALA ALA ASP VAL HIS ILE VAL ALA ALA THR GLY SEQRES 9 A 340 LEU TRP GLU ASP PRO PRO LEU SER MET ARG LEU ARG SER SEQRES 10 A 340 VAL GLU GLU LEU THR GLN PHE PHE LEU ARG GLU ILE GLN SEQRES 11 A 340 TYR GLY ILE GLU ASP THR GLY ILE ARG ALA GLY ILE ILE SEQRES 12 A 340 LYS VAL ALA THR GLN GLY LYS ALA THR PRO PHE GLN GLU SEQRES 13 A 340 LEU VAL LEU ARG ALA ALA ALA ARG ALA SER LEU ALA THR SEQRES 14 A 340 GLY VAL PRO VAL THR THR HIS THR PHE ALA SER GLN ARG SEQRES 15 A 340 ASP GLY GLU GLN GLN ALA ALA ILE PHE GLU SER GLU GLY SEQRES 16 A 340 LEU SER PRO SER ARG VAL CYS ILE GLY HIS SER ASP ASP SEQRES 17 A 340 THR ASP ASP LEU SER TYR LEU THR ALA LEU ALA ALA ARG SEQRES 18 A 340 GLY TYR LEU ILE GLY LEU ASP GLY ILE PRO HIS SER ALA SEQRES 19 A 340 ILE GLY LEU GLU ASP ASN ALA SER ALA SER ALA LEU LEU SEQRES 20 A 340 GLY ASN ARG SER TRP GLN THR ARG ALA LEU LEU ILE LYS SEQRES 21 A 340 ALA LEU ILE ASP GLN GLY TYR MET LYS GLN ILE LEU VAL SEQRES 22 A 340 SER ASN ASP TRP LEU PHE GLY PHE SER SER TYR VAL THR SEQRES 23 A 340 ASN ILE MET ASP VAL MET ASP SER VAL ASN PRO ASP GLY SEQRES 24 A 340 MET ALA PHE ILE PRO LEU ARG VAL ILE PRO PHE LEU ARG SEQRES 25 A 340 GLU LYS GLY VAL PRO GLN GLU THR LEU ALA GLY ILE THR SEQRES 26 A 340 VAL THR ASN PRO ALA ARG PHE LEU SER PRO THR LEU ARG SEQRES 27 A 340 ALA SER SEQRES 1 B 340 ILE SER GLU PHE ILE THR ASN SER GLY ASP ARG ILE ASN SEQRES 2 B 340 THR VAL ARG GLY PRO ILE THR ILE SER GLU ALA GLY PHE SEQRES 3 B 340 THR LEU THR HIS GLU HIS ILE CYS GLY SER SER ALA GLY SEQRES 4 B 340 PHE LEU ARG ALA TRP PRO GLU PHE PHE GLY SER ARG ALA SEQRES 5 B 340 ALA LEU VAL GLU LYS ALA VAL ARG GLY LEU ARG ARG ALA SEQRES 6 B 340 ARG ALA ALA GLY VAL ARG THR ILE VAL ASP VAL SER THR SEQRES 7 B 340 PHE ASP ALA GLY ARG ASP VAL SER LEU LEU ALA GLU VAL SEQRES 8 B 340 SER ARG ALA ALA ASP VAL HIS ILE VAL ALA ALA THR GLY SEQRES 9 B 340 LEU TRP GLU ASP PRO PRO LEU SER MET ARG LEU ARG SER SEQRES 10 B 340 VAL GLU GLU LEU THR GLN PHE PHE LEU ARG GLU ILE GLN SEQRES 11 B 340 TYR GLY ILE GLU ASP THR GLY ILE ARG ALA GLY ILE ILE SEQRES 12 B 340 LYS VAL ALA THR GLN GLY LYS ALA THR PRO PHE GLN GLU SEQRES 13 B 340 LEU VAL LEU ARG ALA ALA ALA ARG ALA SER LEU ALA THR SEQRES 14 B 340 GLY VAL PRO VAL THR THR HIS THR PHE ALA SER GLN ARG SEQRES 15 B 340 ASP GLY GLU GLN GLN ALA ALA ILE PHE GLU SER GLU GLY SEQRES 16 B 340 LEU SER PRO SER ARG VAL CYS ILE GLY HIS SER ASP ASP SEQRES 17 B 340 THR ASP ASP LEU SER TYR LEU THR ALA LEU ALA ALA ARG SEQRES 18 B 340 GLY TYR LEU ILE GLY LEU ASP GLY ILE PRO HIS SER ALA SEQRES 19 B 340 ILE GLY LEU GLU ASP ASN ALA SER ALA SER ALA LEU LEU SEQRES 20 B 340 GLY ASN ARG SER TRP GLN THR ARG ALA LEU LEU ILE LYS SEQRES 21 B 340 ALA LEU ILE ASP GLN GLY TYR MET LYS GLN ILE LEU VAL SEQRES 22 B 340 SER ASN ASP TRP LEU PHE GLY PHE SER SER TYR VAL THR SEQRES 23 B 340 ASN ILE MET ASP VAL MET ASP SER VAL ASN PRO ASP GLY SEQRES 24 B 340 MET ALA PHE ILE PRO LEU ARG VAL ILE PRO PHE LEU ARG SEQRES 25 B 340 GLU LYS GLY VAL PRO GLN GLU THR LEU ALA GLY ILE THR SEQRES 26 B 340 VAL THR ASN PRO ALA ARG PHE LEU SER PRO THR LEU ARG SEQRES 27 B 340 ALA SER HET FMT A 401 3 HET ZN A 402 1 HET ZN A 403 1 HET E4T A 404 11 HET TRS A 405 8 HET P6G A 406 19 HET PEG A 407 7 HET PGE A 408 10 HET FMT B 401 3 HET ZN B 402 1 HET ZN B 403 1 HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION HETNAM E4T 5-METHYLCYCLOHEXANE-1,1,3,3-TETROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETSYN TRS TRIS BUFFER HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 FMT 2(C H2 O2) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 E4T C7 H14 O4 FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 P6G C12 H26 O7 FORMUL 9 PEG C4 H10 O3 FORMUL 10 PGE C6 H14 O4 FORMUL 14 HOH *386(H2 O) HELIX 1 AA1 SER A 47 ALA A 49 5 3 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 LEU A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 PHE A 203 GLN A 206 5 4 HELIX 11 AB2 ARG A 207 GLU A 219 1 13 HELIX 12 AB3 SER A 222 SER A 224 5 3 HELIX 13 AB4 HIS A 230 THR A 234 5 5 HELIX 14 AB5 ASP A 236 ARG A 246 1 11 HELIX 15 AB6 ASN A 265 GLY A 273 1 9 HELIX 16 AB7 SER A 276 GLN A 290 1 15 HELIX 17 AB8 TYR A 292 LYS A 294 5 3 HELIX 18 AB9 ASN A 312 ASN A 321 1 10 HELIX 19 AC1 ASP A 323 MET A 325 5 3 HELIX 20 AC2 ALA A 326 ARG A 331 1 6 HELIX 21 AC3 ARG A 331 LYS A 339 1 9 HELIX 22 AC4 PRO A 342 VAL A 351 1 10 HELIX 23 AC5 VAL A 351 SER A 359 1 9 HELIX 24 AC6 ILE B 26 ILE B 30 5 5 HELIX 25 AC7 SER B 47 GLY B 50 5 4 HELIX 26 AC8 GLY B 64 TRP B 69 1 6 HELIX 27 AC9 PRO B 70 GLY B 74 5 5 HELIX 28 AD1 SER B 75 ALA B 93 1 19 HELIX 29 AD2 THR B 103 GLY B 107 5 5 HELIX 30 AD3 ASP B 109 ASP B 121 1 13 HELIX 31 AD4 PRO B 135 LEU B 140 1 6 HELIX 32 AD5 SER B 142 TYR B 156 1 15 HELIX 33 AD6 THR B 177 GLY B 195 1 19 HELIX 34 AD7 PHE B 203 GLN B 206 5 4 HELIX 35 AD8 ARG B 207 GLU B 219 1 13 HELIX 36 AD9 SER B 222 SER B 224 5 3 HELIX 37 AE1 HIS B 230 THR B 234 5 5 HELIX 38 AE2 ASP B 236 ARG B 246 1 11 HELIX 39 AE3 ASN B 265 GLY B 273 1 9 HELIX 40 AE4 SER B 276 GLN B 290 1 15 HELIX 41 AE5 TYR B 292 LYS B 294 5 3 HELIX 42 AE6 ASN B 312 ASN B 321 1 10 HELIX 43 AE7 ASP B 323 MET B 325 5 3 HELIX 44 AE8 ALA B 326 LYS B 339 1 14 HELIX 45 AE9 PRO B 342 VAL B 351 1 10 HELIX 46 AF1 VAL B 351 SER B 359 1 9 SHEET 1 AA1 2 ARG A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 GLY A 129 0 SHEET 2 AA4 6 ILE A 167 ALA A 171 1 O LYS A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA5 2 ARG B 36 THR B 39 0 SHEET 2 AA5 2 GLY B 42 THR B 45 -1 O ILE B 44 N ILE B 37 SHEET 1 AA6 3 THR B 52 GLU B 56 0 SHEET 2 AA6 3 THR B 97 ASP B 100 1 O VAL B 99 N LEU B 53 SHEET 3 AA6 3 HIS B 123 VAL B 125 1 O HIS B 123 N ILE B 98 SHEET 1 AA7 2 CYS B 59 GLY B 60 0 SHEET 2 AA7 2 GLY B 305 PHE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 AA8 6 ALA B 127 GLY B 129 0 SHEET 2 AA8 6 ILE B 167 ALA B 171 1 O LYS B 169 N THR B 128 SHEET 3 AA8 6 VAL B 198 HIS B 201 1 O THR B 199 N ILE B 168 SHEET 4 AA8 6 VAL B 226 ILE B 228 1 O CYS B 227 N VAL B 198 SHEET 5 AA8 6 LEU B 249 LEU B 252 1 O LEU B 249 N ILE B 228 SHEET 6 AA8 6 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252 LINK NE2 HIS A 55 ZN ZN A 402 1555 1555 2.09 LINK NE2 HIS A 57 ZN ZN A 402 1555 1555 2.03 LINK ND1 HIS A 201 ZN ZN A 403 1555 1555 1.97 LINK NE2 HIS A 230 ZN ZN A 403 1555 1555 1.99 LINK OD1 ASP A 301 ZN ZN A 402 1555 1555 2.33 LINK O2 FMT A 401 ZN ZN A 402 1555 1555 2.06 LINK O1 FMT A 401 ZN ZN A 403 1555 1555 1.99 LINK ZN ZN A 402 OAF E4T A 404 1555 1555 1.85 LINK ZN ZN A 403 OAD E4T A 404 1555 1555 1.87 LINK NE2 HIS B 55 ZN ZN B 402 1555 1555 2.15 LINK NE2 HIS B 57 ZN ZN B 402 1555 1555 2.07 LINK ND1 HIS B 201 ZN ZN B 403 1555 1555 2.05 LINK NE2 HIS B 230 ZN ZN B 403 1555 1555 1.99 LINK OD1 ASP B 301 ZN ZN B 402 1555 1555 2.50 LINK O2 FMT B 401 ZN ZN B 402 1555 1555 2.15 LINK O1 FMT B 401 ZN ZN B 403 1555 1555 1.99 SITE 1 AC1 8 HIS A 55 HIS A 57 LYS A 169 HIS A 201 SITE 2 AC1 8 HIS A 230 ZN A 402 ZN A 403 E4T A 404 SITE 1 AC2 5 HIS A 55 HIS A 57 ASP A 301 FMT A 401 SITE 2 AC2 5 E4T A 404 SITE 1 AC3 4 HIS A 201 HIS A 230 FMT A 401 E4T A 404 SITE 1 AC4 12 HIS A 55 HIS A 57 TRP A 131 HIS A 201 SITE 2 AC4 12 HIS A 230 ASP A 301 PHE A 306 FMT A 401 SITE 3 AC4 12 ZN A 402 ZN A 403 TRS A 405 HOH A 518 SITE 1 AC5 8 HIS A 201 HIS A 230 ASP A 233 HIS A 257 SITE 2 AC5 8 LEU A 271 ARG A 280 E4T A 404 HOH A 565 SITE 1 AC6 4 ARG A 41 PRO A 43 ARG A 118 HOH A 600 SITE 1 AC7 4 ARG A 337 GLN A 343 THR A 350 VAL A 351 SITE 1 AC8 9 LEU A 130 TRP A 131 GLU A 132 PRO A 134 SITE 2 AC8 9 ALA A 171 PHE A 179 GLN A 180 VAL A 183 SITE 3 AC8 9 HOH A 522 SITE 1 AC9 7 HIS B 55 HIS B 57 LYS B 169 HIS B 201 SITE 2 AC9 7 HIS B 230 ZN B 402 ZN B 403 SITE 1 AD1 4 HIS B 55 HIS B 57 ASP B 301 FMT B 401 SITE 1 AD2 3 HIS B 201 HIS B 230 FMT B 401 CRYST1 54.350 81.125 70.583 90.00 94.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018399 0.000000 0.001590 0.00000 SCALE2 0.000000 0.012327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014221 0.00000