HEADER FLAVOPROTEIN 21-FEB-18 6FTC TITLE THIOREDOXIN GLUTATHIONE REDUCTASE FROM SCHISTOSOMA MANSONI IN COMPLEX TITLE 2 WITH HEPES COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN GLUTATHIONE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_TAXID: 6183; SOURCE 4 GENE: SMP_048430; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FRAGMENT, ALLOSTERIC POCKET, SCHISTOSOMIASIS, FAD/NAD LINKED KEYWDS 2 REDUCTASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.SILVESTRI,F.FATA,A.E.MIELE,G.BOUMIS,D.L.WILLIAMS,F.ANGELUCCI REVDAT 4 17-JAN-24 6FTC 1 REMARK REVDAT 3 30-MAR-22 6FTC 1 REMARK REVDAT 2 29-AUG-18 6FTC 1 JRNL REVDAT 1 06-JUN-18 6FTC 0 JRNL AUTH I.SILVESTRI,H.LYU,F.FATA,G.BOUMIS,A.E.MIELE,M.ARDINI, JRNL AUTH 2 R.IPPOLITI,A.BELLELLI,A.JADHAV,W.A.LEA,A.SIMEONOV,Q.CHENG, JRNL AUTH 3 E.S.J.ARNER,G.R.J.THATCHER,P.A.PETUKHOV,D.L.WILLIAMS, JRNL AUTH 4 F.ANGELUCCI JRNL TITL FRAGMENT-BASED DISCOVERY OF A REGULATORY SITE IN THIOREDOXIN JRNL TITL 2 GLUTATHIONE REDUCTASE ACTING AS "DOORSTOP" FOR NADPH ENTRY. JRNL REF ACS CHEM. BIOL. V. 13 2190 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29800515 JRNL DOI 10.1021/ACSCHEMBIO.8B00349 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 76137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0600 - 5.4607 1.00 2676 118 0.2070 0.1986 REMARK 3 2 5.4607 - 4.3363 1.00 2598 146 0.1564 0.1634 REMARK 3 3 4.3363 - 3.7887 1.00 2585 148 0.1548 0.1667 REMARK 3 4 3.7887 - 3.4426 1.00 2605 132 0.1617 0.1822 REMARK 3 5 3.4426 - 3.1960 1.00 2594 147 0.1751 0.1919 REMARK 3 6 3.1960 - 3.0076 1.00 2558 144 0.1774 0.1981 REMARK 3 7 3.0076 - 2.8570 1.00 2566 152 0.1739 0.1910 REMARK 3 8 2.8570 - 2.7327 1.00 2566 166 0.1699 0.2126 REMARK 3 9 2.7327 - 2.6275 1.00 2586 136 0.1726 0.2000 REMARK 3 10 2.6275 - 2.5369 1.00 2569 139 0.1695 0.2034 REMARK 3 11 2.5369 - 2.4576 1.00 2576 128 0.1744 0.2020 REMARK 3 12 2.4576 - 2.3873 1.00 2567 147 0.1652 0.1944 REMARK 3 13 2.3873 - 2.3245 1.00 2588 135 0.1628 0.1813 REMARK 3 14 2.3245 - 2.2678 1.00 2586 128 0.1605 0.2014 REMARK 3 15 2.2678 - 2.2162 1.00 2575 142 0.1629 0.2206 REMARK 3 16 2.2162 - 2.1691 1.00 2616 129 0.1686 0.1655 REMARK 3 17 2.1691 - 2.1257 1.00 2576 123 0.1705 0.1782 REMARK 3 18 2.1257 - 2.0856 1.00 2563 134 0.1739 0.1823 REMARK 3 19 2.0856 - 2.0483 1.00 2519 177 0.1794 0.2161 REMARK 3 20 2.0483 - 2.0136 1.00 2591 136 0.1923 0.2315 REMARK 3 21 2.0136 - 1.9811 1.00 2591 132 0.1889 0.2248 REMARK 3 22 1.9811 - 1.9507 1.00 2556 139 0.1928 0.2101 REMARK 3 23 1.9507 - 1.9220 1.00 2562 127 0.1967 0.2209 REMARK 3 24 1.9220 - 1.8949 1.00 2625 119 0.2055 0.2491 REMARK 3 25 1.8949 - 1.8693 1.00 2547 136 0.2097 0.2484 REMARK 3 26 1.8693 - 1.8450 1.00 2590 134 0.2236 0.2802 REMARK 3 27 1.8450 - 1.8220 1.00 2599 135 0.2288 0.2502 REMARK 3 28 1.8220 - 1.8000 1.00 2550 128 0.2419 0.2748 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4709 REMARK 3 ANGLE : 0.854 6379 REMARK 3 CHIRALITY : 0.086 721 REMARK 3 PLANARITY : 0.005 798 REMARK 3 DIHEDRAL : 15.045 2824 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8577 22.6146 0.8210 REMARK 3 T TENSOR REMARK 3 T11: 0.2991 T22: 0.1922 REMARK 3 T33: 0.3042 T12: -0.0484 REMARK 3 T13: 0.0674 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.4548 L22: 1.8592 REMARK 3 L33: 0.5690 L12: 0.4923 REMARK 3 L13: -0.5416 L23: -0.3011 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0930 S13: 0.3243 REMARK 3 S21: -0.4774 S22: 0.0645 S23: -0.3216 REMARK 3 S31: -0.1128 S32: 0.1024 S33: -0.0288 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3406 -11.0225 4.9135 REMARK 3 T TENSOR REMARK 3 T11: 0.2037 T22: 0.1430 REMARK 3 T33: 0.2312 T12: 0.0108 REMARK 3 T13: 0.0064 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.9978 L22: 0.3460 REMARK 3 L33: 0.7937 L12: -0.2071 REMARK 3 L13: 0.6164 L23: 0.2268 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.1272 S13: -0.2925 REMARK 3 S21: -0.1197 S22: 0.0358 S23: -0.0354 REMARK 3 S31: 0.0486 S32: -0.0504 S33: -0.0346 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0797 -4.2957 24.2888 REMARK 3 T TENSOR REMARK 3 T11: 0.1695 T22: 0.2563 REMARK 3 T33: 0.1407 T12: 0.0498 REMARK 3 T13: 0.0004 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.7024 L22: 0.9590 REMARK 3 L33: 0.7224 L12: 0.0154 REMARK 3 L13: 0.2645 L23: -0.2341 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.3602 S13: -0.1777 REMARK 3 S21: 0.0987 S22: 0.0659 S23: -0.0970 REMARK 3 S31: 0.0283 S32: -0.0472 S33: -0.0092 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 385 THROUGH 415 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4221 8.2712 28.0088 REMARK 3 T TENSOR REMARK 3 T11: 0.2601 T22: 0.3258 REMARK 3 T33: 0.1879 T12: -0.0031 REMARK 3 T13: -0.0658 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 1.9699 L22: 3.4079 REMARK 3 L33: 0.5928 L12: 2.2936 REMARK 3 L13: -0.5210 L23: -0.4017 REMARK 3 S TENSOR REMARK 3 S11: 0.2550 S12: -0.4991 S13: -0.1054 REMARK 3 S21: 0.6904 S22: -0.1345 S23: -0.3714 REMARK 3 S31: -0.1850 S32: 0.1372 S33: -0.1574 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 416 THROUGH 592 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5349 13.9311 9.9208 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1392 REMARK 3 T33: 0.1500 T12: 0.0425 REMARK 3 T13: -0.0135 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.2001 L22: 0.4238 REMARK 3 L33: 0.6141 L12: 0.0414 REMARK 3 L13: 0.2620 L23: 0.0042 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: -0.1950 S13: 0.1810 REMARK 3 S21: -0.0058 S22: 0.0416 S23: 0.0589 REMARK 3 S31: -0.1274 S32: -0.0975 S33: 0.0498 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.051 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 9.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 20%, HEPES 0.1 M PH=7.2., KI REMARK 280 0.2 M, 5MM BME., PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.96700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.31850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.96700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.31850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 593 REMARK 465 SER A 594 REMARK 465 GLY A 595 REMARK 465 CYS A 596 REMARK 465 SEC A 597 REMARK 465 GLY A 598 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 957 O HOH A 1117 2.15 REMARK 500 O HOH A 1068 O HOH A 1285 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 566 N ARG A 566 CA 0.131 REMARK 500 ARG A 566 CA ARG A 566 C 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 566 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 28 87.77 -174.45 REMARK 500 VAL A 157 33.79 -142.77 REMARK 500 ALA A 256 47.07 -148.17 REMARK 500 ALA A 294 15.62 -140.18 REMARK 500 SER A 318 -78.88 -138.48 REMARK 500 PHE A 474 52.29 -91.17 REMARK 500 ASP A 530 52.91 -117.81 REMARK 500 HIS A 582 -23.53 -148.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 606 DBREF 6FTC A 1 598 UNP G4V8J4 G4V8J4_SCHMA 1 598 SEQRES 1 A 598 MET PRO PRO ALA ASP GLY THR SER GLN TRP LEU ARG LYS SEQRES 2 A 598 THR VAL ASP SER ALA ALA VAL ILE LEU PHE SER LYS THR SEQRES 3 A 598 THR CYS PRO TYR CYS LYS LYS VAL LYS ASP VAL LEU ALA SEQRES 4 A 598 GLU ALA LYS ILE LYS HIS ALA THR ILE GLU LEU ASP GLN SEQRES 5 A 598 LEU SER ASN GLY SER ALA ILE GLN LYS CYS LEU ALA SER SEQRES 6 A 598 PHE SER LYS ILE GLU THR VAL PRO GLN MET PHE VAL ARG SEQRES 7 A 598 GLY LYS PHE ILE GLY ASP SER GLN THR VAL LEU LYS TYR SEQRES 8 A 598 TYR SER ASN ASP GLU LEU ALA GLY ILE VAL ASN GLU SER SEQRES 9 A 598 LYS TYR ASP TYR ASP LEU ILE VAL ILE GLY GLY GLY SER SEQRES 10 A 598 GLY GLY LEU ALA ALA GLY LYS GLU ALA ALA LYS TYR GLY SEQRES 11 A 598 ALA LYS THR ALA VAL LEU ASP TYR VAL GLU PRO THR PRO SEQRES 12 A 598 ILE GLY THR THR TRP GLY LEU GLY GLY THR CYS VAL ASN SEQRES 13 A 598 VAL GLY CYS ILE PRO LYS LYS LEU MET HIS GLN ALA GLY SEQRES 14 A 598 LEU LEU SER HIS ALA LEU GLU ASP ALA GLU HIS PHE GLY SEQRES 15 A 598 TRP SER LEU ASP ARG SER LYS ILE SER HIS ASN TRP SER SEQRES 16 A 598 THR MET VAL GLU GLY VAL GLN SER HIS ILE GLY SER LEU SEQRES 17 A 598 ASN TRP GLY TYR LYS VAL ALA LEU ARG ASP ASN GLN VAL SEQRES 18 A 598 THR TYR LEU ASN ALA LYS GLY ARG LEU ILE SER PRO HIS SEQRES 19 A 598 GLU VAL GLN ILE THR ASP LYS ASN GLN LYS VAL SER THR SEQRES 20 A 598 ILE THR GLY ASN LYS ILE ILE LEU ALA THR GLY GLU ARG SEQRES 21 A 598 PRO LYS TYR PRO GLU ILE PRO GLY ALA VAL GLU TYR GLY SEQRES 22 A 598 ILE THR SER ASP ASP LEU PHE SER LEU PRO TYR PHE PRO SEQRES 23 A 598 GLY LYS THR LEU VAL ILE GLY ALA SER TYR VAL ALA LEU SEQRES 24 A 598 GLU CYS ALA GLY PHE LEU ALA SER LEU GLY GLY ASP VAL SEQRES 25 A 598 THR VAL MET VAL ARG SER ILE LEU LEU ARG GLY PHE ASP SEQRES 26 A 598 GLN GLN MET ALA GLU LYS VAL GLY ASP TYR MET GLU ASN SEQRES 27 A 598 HIS GLY VAL LYS PHE ALA LYS LEU CYS VAL PRO ASP GLU SEQRES 28 A 598 ILE LYS GLN LEU LYS VAL VAL ASP THR GLU ASN ASN LYS SEQRES 29 A 598 PRO GLY LEU LEU LEU VAL LYS GLY HIS TYR THR ASP GLY SEQRES 30 A 598 LYS LYS PHE GLU GLU GLU PHE GLU THR VAL ILE PHE ALA SEQRES 31 A 598 VAL GLY ARG GLU PRO GLN LEU SER LYS VAL LEU CYS GLU SEQRES 32 A 598 THR VAL GLY VAL LYS LEU ASP LYS ASN GLY ARG VAL VAL SEQRES 33 A 598 CYS THR ASP ASP GLU GLN THR THR VAL SER ASN VAL TYR SEQRES 34 A 598 ALA ILE GLY ASP ILE ASN ALA GLY LYS PRO GLN LEU THR SEQRES 35 A 598 PRO VAL ALA ILE GLN ALA GLY ARG TYR LEU ALA ARG ARG SEQRES 36 A 598 LEU PHE ALA GLY ALA THR GLU LEU THR ASP TYR SER ASN SEQRES 37 A 598 VAL ALA THR THR VAL PHE THR PRO LEU GLU TYR GLY ALA SEQRES 38 A 598 CYS GLY LEU SER GLU GLU ASP ALA ILE GLU LYS TYR GLY SEQRES 39 A 598 ASP LYS ASP ILE GLU VAL TYR HIS SER ASN PHE LYS PRO SEQRES 40 A 598 LEU GLU TRP THR VAL ALA HIS ARG GLU ASP ASN VAL CYS SEQRES 41 A 598 TYR MET LYS LEU VAL CYS ARG LYS SER ASP ASN MET ARG SEQRES 42 A 598 VAL LEU GLY LEU HIS VAL LEU GLY PRO ASN ALA GLY GLU SEQRES 43 A 598 ILE THR GLN GLY TYR ALA VAL ALA ILE LYS MET GLY ALA SEQRES 44 A 598 THR LYS ALA ASP PHE ASP ARG THR ILE GLY ILE HIS PRO SEQRES 45 A 598 THR CYS SER GLU THR PHE THR THR LEU HIS VAL THR LYS SEQRES 46 A 598 LYS SER GLY VAL SER PRO ILE VAL SER GLY CYS SEC GLY HET FAD A 601 84 HET EPE A 602 32 HET PGE A 603 24 HET PGE A 604 24 HET PG4 A 605 31 HET PEG A 606 17 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EPE HEPES FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 PGE 2(C6 H14 O4) FORMUL 6 PG4 C8 H18 O5 FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *589(H2 O) HELIX 1 AA1 GLY A 6 ALA A 18 1 13 HELIX 2 AA2 CYS A 28 ALA A 41 1 14 HELIX 3 AA3 ASP A 51 LEU A 53 5 3 HELIX 4 AA4 ASN A 55 LYS A 68 1 14 HELIX 5 AA5 ASP A 84 ASN A 94 1 11 HELIX 6 AA6 GLU A 96 GLU A 103 1 8 HELIX 7 AA7 GLY A 116 TYR A 129 1 14 HELIX 8 AA8 GLY A 151 GLY A 158 1 8 HELIX 9 AA9 GLY A 158 PHE A 181 1 24 HELIX 10 AB1 ASP A 186 ILE A 190 5 5 HELIX 11 AB2 ASN A 193 ASN A 219 1 27 HELIX 12 AB3 GLY A 268 GLY A 273 1 6 HELIX 13 AB4 SER A 276 PHE A 280 1 5 HELIX 14 AB5 SER A 295 LEU A 308 1 14 HELIX 15 AB6 ASP A 325 HIS A 339 1 15 HELIX 16 AB7 SER A 398 GLY A 406 1 9 HELIX 17 AB8 GLY A 432 ASN A 435 5 4 HELIX 18 AB9 LEU A 441 GLY A 459 1 19 HELIX 19 AC1 SER A 485 GLY A 494 1 10 HELIX 20 AC2 LEU A 508 ALA A 513 1 6 HELIX 21 AC3 SER A 529 ASN A 531 5 3 HELIX 22 AC4 ASN A 543 MET A 557 1 15 HELIX 23 AC5 THR A 560 THR A 567 1 8 HELIX 24 AC6 CYS A 574 THR A 580 5 7 SHEET 1 AA1 4 ALA A 46 GLU A 49 0 SHEET 2 AA1 4 VAL A 20 SER A 24 1 N SER A 24 O ILE A 48 SHEET 3 AA1 4 GLN A 74 VAL A 77 -1 O GLN A 74 N PHE A 23 SHEET 4 AA1 4 LYS A 80 GLY A 83 -1 O ILE A 82 N MET A 75 SHEET 1 AA2 6 THR A 222 LEU A 224 0 SHEET 2 AA2 6 THR A 133 LEU A 136 1 N VAL A 135 O THR A 222 SHEET 3 AA2 6 TYR A 108 ILE A 113 1 N VAL A 112 O ALA A 134 SHEET 4 AA2 6 VAL A 245 LEU A 255 1 O LYS A 252 N ASP A 109 SHEET 5 AA2 6 GLU A 235 THR A 239 -1 N VAL A 236 O ILE A 248 SHEET 6 AA2 6 LYS A 227 SER A 232 -1 N ARG A 229 O GLN A 237 SHEET 1 AA3 5 THR A 222 LEU A 224 0 SHEET 2 AA3 5 THR A 133 LEU A 136 1 N VAL A 135 O THR A 222 SHEET 3 AA3 5 TYR A 108 ILE A 113 1 N VAL A 112 O ALA A 134 SHEET 4 AA3 5 VAL A 245 LEU A 255 1 O LYS A 252 N ASP A 109 SHEET 5 AA3 5 VAL A 428 ALA A 430 1 O TYR A 429 N LEU A 255 SHEET 1 AA4 2 GLU A 259 PRO A 261 0 SHEET 2 AA4 2 ARG A 393 PRO A 395 -1 O GLU A 394 N ARG A 260 SHEET 1 AA5 5 ILE A 274 THR A 275 0 SHEET 2 AA5 5 THR A 386 PHE A 389 1 O PHE A 389 N ILE A 274 SHEET 3 AA5 5 THR A 289 ILE A 292 1 N ILE A 292 O ILE A 388 SHEET 4 AA5 5 VAL A 312 VAL A 316 1 O THR A 313 N VAL A 291 SHEET 5 AA5 5 VAL A 341 LYS A 345 1 O ALA A 344 N VAL A 314 SHEET 1 AA6 3 CYS A 347 LYS A 356 0 SHEET 2 AA6 3 LEU A 367 TYR A 374 -1 O LYS A 371 N ASP A 350 SHEET 3 AA6 3 LYS A 379 PHE A 384 -1 O PHE A 384 N LEU A 368 SHEET 1 AA7 5 THR A 471 VAL A 473 0 SHEET 2 AA7 5 TYR A 479 GLY A 483 -1 O TYR A 479 N VAL A 473 SHEET 3 AA7 5 VAL A 534 LEU A 540 -1 O VAL A 539 N GLY A 480 SHEET 4 AA7 5 CYS A 520 ARG A 527 -1 N TYR A 521 O LEU A 540 SHEET 5 AA7 5 ILE A 498 PHE A 505 -1 N GLU A 499 O CYS A 526 SSBOND 1 CYS A 28 CYS A 31 1555 1555 2.04 SSBOND 2 CYS A 154 CYS A 159 1555 1555 2.04 CISPEP 1 VAL A 72 PRO A 73 0 -0.60 CISPEP 2 HIS A 571 PRO A 572 0 -4.31 SITE 1 AC1 36 ILE A 113 GLY A 114 GLY A 115 GLY A 116 SITE 2 AC1 36 SER A 117 GLY A 118 ASP A 137 TYR A 138 SITE 3 AC1 36 GLY A 152 THR A 153 CYS A 154 GLY A 158 SITE 4 AC1 36 CYS A 159 LYS A 162 ALA A 226 GLY A 228 SITE 5 AC1 36 ALA A 256 THR A 257 GLY A 258 TYR A 296 SITE 6 AC1 36 VAL A 297 ARG A 393 GLY A 432 ASP A 433 SITE 7 AC1 36 GLN A 440 LEU A 441 THR A 442 PRO A 443 SITE 8 AC1 36 HIS A 571 HOH A 748 HOH A 773 HOH A 812 SITE 9 AC1 36 HOH A 896 HOH A 911 HOH A 921 HOH A1076 SITE 1 AC2 11 ARG A 322 GLY A 323 PHE A 324 ALA A 481 SITE 2 AC2 11 GLY A 483 HOH A 746 HOH A 912 HOH A 957 SITE 3 AC2 11 HOH A1001 HOH A1072 HOH A1108 SITE 1 AC3 7 ILE A 319 LEU A 320 GLN A 326 GLY A 333 SITE 2 AC3 7 ASP A 334 HOH A 968 HOH A1111 SITE 1 AC4 11 TRP A 10 LYS A 13 THR A 14 ASP A 420 SITE 2 AC4 11 TYR A 429 LEU A 452 ARG A 455 LEU A 456 SITE 3 AC4 11 ALA A 460 HOH A 864 HOH A 997 SITE 1 AC5 3 ASP A 488 GLU A 491 LYS A 492 SITE 1 AC6 7 TYR A 138 ASN A 225 THR A 239 ASP A 240 SITE 2 AC6 7 LYS A 241 GLN A 243 HOH A1169 CRYST1 143.934 102.637 61.646 90.00 113.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006948 0.000000 0.002961 0.00000 SCALE2 0.000000 0.009743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017633 0.00000