HEADER ELECTRON TRANSPORT 26-FEB-18 6FU3 TITLE STRUCTURE OF THE MIXED-VALENCE, ACTIVE FORM, OF CYTOCHROME C TITLE 2 PEROXIDASE FROM OBLIGATE HUMAN PATHOGENIC BACTERIUM NEISSERIA TITLE 3 GONORRHOEAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CCPR; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: CCPA, WHOF_00612, WHOF_02054, WHOG_00329, WHOG_02247C, SOURCE 5 WHOK_00254, WHOK_02247C, WHOL_00503, WHOL_01944C, WHOM_00704, SOURCE 6 WHOM_02256C, WHON_00634, WHON_02251C, WHOO_00344, WHOO_01926, SOURCE 7 WHOP_00646, WHOP_02256C, WHOU_00764, WHOU_02329C, WHOV_00550, SOURCE 8 WHOV_02317C, WHOW_00232, WHOW_02310C, WHOX_00887, WHOX_02246C, SOURCE 9 WHOY_00586, WHOY_02329C, WHOZ_00270, WHOZ_02318C; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NEISSERIA GONORRHOEAE, BACTERIAL PEROXIDASE, ROS DETOXIFICATION, KEYWDS 2 ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.L.CARVALHO,M.J.ROMAO,S.PAULETA,C.NOBREGA REVDAT 3 17-JAN-24 6FU3 1 REMARK REVDAT 2 20-JUL-22 6FU3 1 COMPND REMARK HELIX LINK REVDAT 2 2 1 SITE SCALE ATOM REVDAT 1 13-MAR-19 6FU3 0 JRNL AUTH A.L.CARVALHO,M.J.ROMAO,S.PAULETA,C.NOBREGA JRNL TITL STRUCTURE OF THE MIXED-VALENCE, ACTIVE FORM, OF CYTOCHROME C JRNL TITL 2 PEROXIDASE FROM OBLIGATE HUMAN PATHOGENIC BACTERIUM JRNL TITL 3 NEISSERIA GONORRHOEAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 57511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4141 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3940 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5062 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 524 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.836 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5424 ; 0.016 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 5006 ; 0.001 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7383 ; 2.198 ; 1.918 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11554 ; 1.228 ; 2.738 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 657 ; 6.167 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;36.620 ;23.841 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 883 ;13.663 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.007 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 754 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6257 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1239 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2628 ; 2.118 ; 0.952 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2619 ; 2.119 ; 0.950 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3268 ; 2.760 ; 1.416 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3269 ; 2.760 ; 1.417 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2796 ; 3.667 ; 1.268 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2794 ; 3.663 ; 1.268 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4112 ; 4.905 ; 1.760 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6548 ; 6.167 ;12.638 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6423 ; 6.114 ;12.156 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1640 42.3120 33.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.0236 T22: 0.0436 REMARK 3 T33: 0.0415 T12: 0.0184 REMARK 3 T13: -0.0084 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.7198 L22: 1.4786 REMARK 3 L33: 0.7274 L12: 0.7324 REMARK 3 L13: 0.5650 L23: 0.3769 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.0836 S13: -0.0558 REMARK 3 S21: 0.0511 S22: 0.0087 S23: -0.2088 REMARK 3 S31: 0.0120 S32: 0.0275 S33: -0.0204 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 325 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2240 40.5090 32.1880 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.0395 REMARK 3 T33: 0.0336 T12: 0.0175 REMARK 3 T13: 0.0082 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.2517 L22: 2.2461 REMARK 3 L33: 0.3833 L12: 0.8230 REMARK 3 L13: -0.0563 L23: -0.1048 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.0611 S13: -0.0442 REMARK 3 S21: 0.0844 S22: -0.0111 S23: 0.1445 REMARK 3 S31: -0.0132 S32: -0.0297 S33: -0.0100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 6FU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER IMUS MICROFOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61589 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 64.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.15650 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.83980 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VHD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% 5/4 PO/OH AND 0.1M MES PH6.0 IN REMARK 280 THE PRESENCE OF 2MM CACL2, 10MM SODIUM ASCORBATE AND 0.2MM FMN, REMARK 280 USING A 20MG/ML PROTEIN SOLUTION PREVIOUSLY INCUBATED WITH REMARK 280 CALCIUM, SODIUM ASCORBATE AND FMN., PH 7.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.47100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.56100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.56100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.47100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 330 REMARK 465 LYS A 331 REMARK 465 LEU A 332 REMARK 465 GLU A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 MET B 1 REMARK 465 SER B 326 REMARK 465 LYS B 327 REMARK 465 PRO B 328 REMARK 465 ASP B 329 REMARK 465 ASN B 330 REMARK 465 LYS B 331 REMARK 465 LEU B 332 REMARK 465 GLU B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 16 O HOH B 501 2.11 REMARK 500 OE1 GLU A 317 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 69 CG - SD - CE ANGL. DEV. = 11.3 DEGREES REMARK 500 ASP A 274 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 59 58.16 -111.81 REMARK 500 PHE A 97 160.13 83.37 REMARK 500 GLU A 118 -106.68 -109.70 REMARK 500 ASP A 148 78.40 -163.24 REMARK 500 ASP A 234 120.92 -36.76 REMARK 500 PHE A 265 172.89 78.57 REMARK 500 LEU A 320 53.00 -110.86 REMARK 500 HIS B 59 56.89 -112.79 REMARK 500 PHE B 97 156.29 80.70 REMARK 500 GLU B 118 -104.90 -110.77 REMARK 500 ASP B 148 85.12 -162.49 REMARK 500 ASP B 234 122.24 -37.97 REMARK 500 PHE B 265 175.99 75.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 NE2 REMARK 620 2 HEC A 402 NA 90.5 REMARK 620 3 HEC A 402 NB 91.0 91.4 REMARK 620 4 HEC A 402 NC 91.4 177.9 89.5 REMARK 620 5 HEC A 402 ND 93.6 91.3 174.7 87.7 REMARK 620 6 HOH A 592 O 173.8 94.6 92.3 83.4 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 83 OD1 REMARK 620 2 THR A 261 O 146.6 REMARK 620 3 PRO A 263 O 98.6 80.9 REMARK 620 4 HOH A 551 O 78.4 68.4 81.7 REMARK 620 5 HOH A 564 O 74.0 138.5 84.8 147.0 REMARK 620 6 HOH A 572 O 137.9 71.9 106.5 137.5 75.3 REMARK 620 7 HOH A 655 O 83.4 91.2 168.5 87.7 106.6 78.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 204 NE2 REMARK 620 2 HEC A 403 NA 92.5 REMARK 620 3 HEC A 403 NB 88.3 89.7 REMARK 620 4 HEC A 403 NC 91.6 175.9 89.6 REMARK 620 5 HEC A 403 ND 97.0 89.8 174.8 90.5 REMARK 620 6 MET A 280 SD 176.1 87.6 87.8 88.3 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 59 NE2 REMARK 620 2 HEC B 402 NA 92.1 REMARK 620 3 HEC B 402 NB 92.1 90.2 REMARK 620 4 HEC B 402 NC 89.5 177.6 88.0 REMARK 620 5 HEC B 402 ND 92.1 89.6 175.8 92.1 REMARK 620 6 HOH B 577 O 170.9 95.2 93.2 83.3 82.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 83 OD1 REMARK 620 2 THR B 261 O 146.7 REMARK 620 3 PRO B 263 O 95.9 81.5 REMARK 620 4 HOH B 556 O 77.5 69.3 80.8 REMARK 620 5 HOH B 572 O 83.4 90.7 164.6 84.0 REMARK 620 6 HOH B 575 O 71.1 140.9 85.7 144.2 108.4 REMARK 620 7 HOH B 593 O 137.6 73.3 107.2 140.1 83.0 75.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 204 NE2 REMARK 620 2 HEC B 403 NA 91.4 REMARK 620 3 HEC B 403 NB 87.2 90.1 REMARK 620 4 HEC B 403 NC 90.9 177.6 89.4 REMARK 620 5 HEC B 403 ND 98.0 90.7 174.8 89.7 REMARK 620 6 MET B 280 SD 173.4 91.1 86.8 86.5 88.1 REMARK 620 N 1 2 3 4 5 DBREF1 6FU3 A 3 331 UNP A0A1D3HIT0_NEIGO DBREF2 6FU3 A A0A1D3HIT0 59 387 DBREF1 6FU3 B 3 331 UNP A0A1D3HIT0_NEIGO DBREF2 6FU3 B A0A1D3HIT0 59 387 SEQADV 6FU3 MET A 1 UNP A0A1D3HIT INITIATING METHIONINE SEQADV 6FU3 GLY A 2 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 LEU A 332 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 GLU A 333 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS A 334 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS A 335 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS A 336 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS A 337 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS A 338 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS A 339 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 MET B 1 UNP A0A1D3HIT INITIATING METHIONINE SEQADV 6FU3 GLY B 2 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 LEU B 332 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 GLU B 333 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS B 334 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS B 335 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS B 336 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS B 337 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS B 338 UNP A0A1D3HIT EXPRESSION TAG SEQADV 6FU3 HIS B 339 UNP A0A1D3HIT EXPRESSION TAG SEQRES 1 A 339 MET GLY GLU ASP GLN ASP LEU LEU LYS ARG ALA GLN GLY SEQRES 2 A 339 VAL PHE GLN PRO LEU PRO THR VAL GLU GLU MET GLN LYS SEQRES 3 A 339 ILE ARG PRO PHE THR GLU GLU GLN VAL LYS LEU GLY HIS SEQRES 4 A 339 GLN LEU TRP TYR GLU PRO ARG LEU SER LYS GLY ASN THR SEQRES 5 A 339 VAL SER CYS ASN SER CYS HIS ASN LEU ALA SER ALA GLY SEQRES 6 A 339 VAL ASP ASN MET PRO THR SER GLN GLY HIS LYS GLY GLN SEQRES 7 A 339 PHE GLY GLY ARG ASN SER PRO THR ALA LEU ASN ALA ALA SEQRES 8 A 339 LEU LEU GLY SER GLN PHE TRP ASP GLY ARG ALA ALA ASP SEQRES 9 A 339 VAL GLU GLU GLN ALA GLY GLY PRO LEU VAL ASN PRO VAL SEQRES 10 A 339 GLU MET ALA ASN ASP SER GLN GLU ALA ALA ALA ALA LYS SEQRES 11 A 339 ILE ALA LYS VAL PRO GLU TYR GLN GLU MET PHE LYS LYS SEQRES 12 A 339 ALA PHE PRO GLU ASP GLY ALA VAL SER PHE LYS ASN ILE SEQRES 13 A 339 THR THR ALA LEU GLY ALA PHE GLU ARG THR LEU LEU THR SEQRES 14 A 339 PRO THR LYS TRP ASP GLU TYR LEU LYS GLY ASN VAL ASN SEQRES 15 A 339 ALA LEU SER GLU GLN GLU ARG LYS GLY VAL ARG ALA PHE SEQRES 16 A 339 MET ASP ASN GLY CYS ILE ALA CYS HIS ASN GLY VAL ASN SEQRES 17 A 339 LEU GLY GLY THR THR PHE GLN LYS PHE GLY LEU VAL GLN SEQRES 18 A 339 GLY PRO TYR TRP LYS PHE ILE GLU ASP PRO LYS ARG ASP SEQRES 19 A 339 LYS GLY ARG ALA ASP VAL THR LYS LYS THR GLU ASP GLU SEQRES 20 A 339 PHE PHE PHE ARG VAL PRO GLY LEU ARG ASN VAL ALA LYS SEQRES 21 A 339 THR TYR PRO TYR PHE HIS ASN GLY SER VAL TRP GLU LEU SEQRES 22 A 339 ASP LYS ALA VAL THR ILE MET GLY LYS ALA GLN LEU GLY SEQRES 23 A 339 LYS ASP ILE PRO LYS GLU ASP VAL ASP ASN ILE VAL VAL SEQRES 24 A 339 PHE LEU ASN ALA LEU SER GLY ASN VAL SER GLU SER ALA SEQRES 25 A 339 ARG THR MET PRO GLU LEU PRO LEU THR ALA PRO MET GLU SEQRES 26 A 339 SER LYS PRO ASP ASN LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 27 A 339 HIS SEQRES 1 B 339 MET GLY GLU ASP GLN ASP LEU LEU LYS ARG ALA GLN GLY SEQRES 2 B 339 VAL PHE GLN PRO LEU PRO THR VAL GLU GLU MET GLN LYS SEQRES 3 B 339 ILE ARG PRO PHE THR GLU GLU GLN VAL LYS LEU GLY HIS SEQRES 4 B 339 GLN LEU TRP TYR GLU PRO ARG LEU SER LYS GLY ASN THR SEQRES 5 B 339 VAL SER CYS ASN SER CYS HIS ASN LEU ALA SER ALA GLY SEQRES 6 B 339 VAL ASP ASN MET PRO THR SER GLN GLY HIS LYS GLY GLN SEQRES 7 B 339 PHE GLY GLY ARG ASN SER PRO THR ALA LEU ASN ALA ALA SEQRES 8 B 339 LEU LEU GLY SER GLN PHE TRP ASP GLY ARG ALA ALA ASP SEQRES 9 B 339 VAL GLU GLU GLN ALA GLY GLY PRO LEU VAL ASN PRO VAL SEQRES 10 B 339 GLU MET ALA ASN ASP SER GLN GLU ALA ALA ALA ALA LYS SEQRES 11 B 339 ILE ALA LYS VAL PRO GLU TYR GLN GLU MET PHE LYS LYS SEQRES 12 B 339 ALA PHE PRO GLU ASP GLY ALA VAL SER PHE LYS ASN ILE SEQRES 13 B 339 THR THR ALA LEU GLY ALA PHE GLU ARG THR LEU LEU THR SEQRES 14 B 339 PRO THR LYS TRP ASP GLU TYR LEU LYS GLY ASN VAL ASN SEQRES 15 B 339 ALA LEU SER GLU GLN GLU ARG LYS GLY VAL ARG ALA PHE SEQRES 16 B 339 MET ASP ASN GLY CYS ILE ALA CYS HIS ASN GLY VAL ASN SEQRES 17 B 339 LEU GLY GLY THR THR PHE GLN LYS PHE GLY LEU VAL GLN SEQRES 18 B 339 GLY PRO TYR TRP LYS PHE ILE GLU ASP PRO LYS ARG ASP SEQRES 19 B 339 LYS GLY ARG ALA ASP VAL THR LYS LYS THR GLU ASP GLU SEQRES 20 B 339 PHE PHE PHE ARG VAL PRO GLY LEU ARG ASN VAL ALA LYS SEQRES 21 B 339 THR TYR PRO TYR PHE HIS ASN GLY SER VAL TRP GLU LEU SEQRES 22 B 339 ASP LYS ALA VAL THR ILE MET GLY LYS ALA GLN LEU GLY SEQRES 23 B 339 LYS ASP ILE PRO LYS GLU ASP VAL ASP ASN ILE VAL VAL SEQRES 24 B 339 PHE LEU ASN ALA LEU SER GLY ASN VAL SER GLU SER ALA SEQRES 25 B 339 ARG THR MET PRO GLU LEU PRO LEU THR ALA PRO MET GLU SEQRES 26 B 339 SER LYS PRO ASP ASN LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 27 B 339 HIS HET CA A 401 1 HET HEC A 402 43 HET HEC A 403 43 HET CA B 401 1 HET HEC B 402 43 HET HEC B 403 43 HETNAM CA CALCIUM ION HETNAM HEC HEME C FORMUL 3 CA 2(CA 2+) FORMUL 4 HEC 4(C34 H34 FE N4 O4) FORMUL 9 HOH *524(H2 O) HELIX 1 AA1 GLY A 2 PHE A 15 1 14 HELIX 2 AA2 THR A 20 ARG A 28 1 9 HELIX 3 AA3 THR A 31 TYR A 43 1 13 HELIX 4 AA4 GLU A 44 SER A 48 5 5 HELIX 5 AA5 SER A 54 HIS A 59 1 6 HELIX 6 AA6 ASN A 60 ALA A 64 5 5 HELIX 7 AA7 GLY A 74 GLN A 78 5 5 HELIX 8 AA8 ASN A 89 LEU A 93 5 5 HELIX 9 AA9 ASP A 104 ALA A 109 1 6 HELIX 10 AB1 ALA A 109 ASN A 115 1 7 HELIX 11 AB2 SER A 123 LYS A 130 1 8 HELIX 12 AB3 ILE A 131 LYS A 133 5 3 HELIX 13 AB4 VAL A 134 PHE A 145 1 12 HELIX 14 AB5 SER A 152 ARG A 165 1 14 HELIX 15 AB6 THR A 171 LYS A 178 1 8 HELIX 16 AB7 ASN A 180 LEU A 184 5 5 HELIX 17 AB8 SER A 185 ASN A 198 1 14 HELIX 18 AB9 GLY A 199 CYS A 203 5 5 HELIX 19 AC1 PRO A 223 PHE A 227 5 5 HELIX 20 AC2 ARG A 237 LYS A 242 1 6 HELIX 21 AC3 LYS A 243 GLU A 247 5 5 HELIX 22 AC4 ASN A 257 THR A 261 5 5 HELIX 23 AC5 GLU A 272 GLY A 286 1 15 HELIX 24 AC6 PRO A 290 ALA A 303 1 14 HELIX 25 AC7 ALA A 322 SER A 326 5 5 HELIX 26 AC8 GLU B 3 PHE B 15 1 13 HELIX 27 AC9 GLU B 22 ILE B 27 5 6 HELIX 28 AD1 THR B 31 TYR B 43 1 13 HELIX 29 AD2 GLU B 44 SER B 48 5 5 HELIX 30 AD3 SER B 54 HIS B 59 1 6 HELIX 31 AD4 ASN B 60 ALA B 64 5 5 HELIX 32 AD5 GLY B 74 GLN B 78 5 5 HELIX 33 AD6 ASN B 89 LEU B 93 5 5 HELIX 34 AD7 ASP B 104 ASN B 115 1 12 HELIX 35 AD8 SER B 123 LYS B 130 1 8 HELIX 36 AD9 ILE B 131 LYS B 133 5 3 HELIX 37 AE1 VAL B 134 PHE B 145 1 12 HELIX 38 AE2 SER B 152 ARG B 165 1 14 HELIX 39 AE3 THR B 171 LYS B 178 1 8 HELIX 40 AE4 ASN B 180 LEU B 184 5 5 HELIX 41 AE5 SER B 185 ASN B 198 1 14 HELIX 42 AE6 GLY B 199 CYS B 203 5 5 HELIX 43 AE7 PRO B 223 PHE B 227 5 5 HELIX 44 AE8 ARG B 237 LYS B 242 1 6 HELIX 45 AE9 LYS B 243 GLU B 247 5 5 HELIX 46 AF1 ASN B 257 THR B 261 5 5 HELIX 47 AF2 GLU B 272 GLY B 286 1 15 HELIX 48 AF3 PRO B 290 ALA B 303 1 14 SHEET 1 AA1 2 PHE A 214 LYS A 216 0 SHEET 2 AA1 2 PHE A 249 ARG A 251 -1 O PHE A 250 N GLN A 215 SHEET 1 AA2 2 PHE B 214 LYS B 216 0 SHEET 2 AA2 2 PHE B 249 ARG B 251 -1 O PHE B 250 N GLN B 215 LINK SG CYS A 55 CAB HEC A 402 1555 1555 1.76 LINK SG CYS A 58 CAC HEC A 402 1555 1555 1.84 LINK SG CYS A 200 CAB HEC A 403 1555 1555 1.71 LINK SG CYS A 203 CAC HEC A 403 1555 1555 1.80 LINK SG CYS B 55 CAB HEC B 402 1555 1555 1.77 LINK SG CYS B 58 CAC HEC B 402 1555 1555 1.83 LINK SG CYS B 200 CAB HEC B 403 1555 1555 1.75 LINK SG CYS B 203 CAC HEC B 403 1555 1555 1.82 LINK NE2 HIS A 59 FE HEC A 402 1555 1555 1.97 LINK OD1 ASN A 83 CA CA A 401 1555 1555 2.33 LINK NE2 HIS A 204 FE HEC A 403 1555 1555 1.97 LINK O THR A 261 CA CA A 401 1555 1555 2.30 LINK O PRO A 263 CA CA A 401 1555 1555 2.34 LINK SD MET A 280 FE HEC A 403 1555 1555 2.27 LINK CA CA A 401 O HOH A 551 1555 1555 2.40 LINK CA CA A 401 O HOH A 564 1555 1555 2.36 LINK CA CA A 401 O HOH A 572 1555 1555 2.36 LINK CA CA A 401 O HOH A 655 1555 1555 2.33 LINK FE HEC A 402 O HOH A 592 1555 1555 2.06 LINK NE2 HIS B 59 FE HEC B 402 1555 1555 1.92 LINK OD1 ASN B 83 CA CA B 401 1555 1555 2.30 LINK NE2 HIS B 204 FE HEC B 403 1555 1555 2.00 LINK O THR B 261 CA CA B 401 1555 1555 2.29 LINK O PRO B 263 CA CA B 401 1555 1555 2.36 LINK SD MET B 280 FE HEC B 403 1555 1555 2.32 LINK CA CA B 401 O HOH B 556 1555 1555 2.37 LINK CA CA B 401 O HOH B 572 1555 1555 2.36 LINK CA CA B 401 O HOH B 575 1555 1555 2.37 LINK CA CA B 401 O HOH B 593 1555 1555 2.35 LINK FE HEC B 402 O HOH B 577 1555 1555 2.06 CISPEP 1 GLY A 222 PRO A 223 0 -5.81 CISPEP 2 TYR A 262 PRO A 263 0 -11.03 CISPEP 3 GLY B 222 PRO B 223 0 -6.12 CISPEP 4 TYR B 262 PRO B 263 0 -11.97 CRYST1 78.942 88.780 93.122 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010739 0.00000