HEADER DNA BINDING PROTEIN 04-MAR-18 6FVM TITLE MUTANT DNA POLYMERASE SLIDING CLAMP FROM ESCHERICHIA COLI WITH BOUND TITLE 2 P7 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA SLIDING CLAMP; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SLIDING CLAMP,BETA-CLAMP PROCESSIVITY FACTOR,DNA POLYMERASE COMPND 5 III BETA SLIDING CLAMP SUBUNIT,DNA POLYMERASE III SUBUNIT BETA; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: RESIDUE 346 IS MUTATED FROM S IN WILD TYPE TO P IN COMPND 8 THIS MUTANT; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: P7 PEPTIDE; COMPND 11 CHAIN: H, I; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: DNAN, Z5192, ECS4636; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS DNA SLIDING CLAMP, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.MARTIEL,C.ANDRE,V.OLIERIC,G.GUICHARD,D.BURNOUF REVDAT 2 17-JAN-24 6FVM 1 REMARK REVDAT 1 10-APR-19 6FVM 0 JRNL AUTH C.ANDRE,I.MARTIEL,P.WOLFF,M.LANDOLFO,B.LORBER, JRNL AUTH 2 C.SILVA DA VEIGA,A.DEJAEGERE,P.DUMAS,G.GUICHARD,V.OLIERIC, JRNL AUTH 3 J.G.WAGNER,D.Y.BURNOUF JRNL TITL PEPTIDE INTERACTIONS ON BACTERIAL SLIDING CLAMPS. JRNL REF ACS INFECT DIS. 2019 JRNL REFN ESSN 2373-8227 JRNL PMID 30912430 JRNL DOI 10.1021/ACSINFECDIS.9B00089 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.3 REMARK 3 NUMBER OF REFLECTIONS : 64936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.3572 - 4.5683 1.00 4053 208 0.1768 0.2013 REMARK 3 2 4.5683 - 3.6261 1.00 4048 215 0.1376 0.1727 REMARK 3 3 3.6261 - 3.1677 1.00 4029 202 0.1555 0.2051 REMARK 3 4 3.1677 - 2.8781 1.00 4052 210 0.1687 0.2083 REMARK 3 5 2.8781 - 2.6718 1.00 4065 204 0.1787 0.2006 REMARK 3 6 2.6718 - 2.5143 1.00 4079 212 0.1739 0.2219 REMARK 3 7 2.5143 - 2.3883 1.00 4059 204 0.1808 0.2366 REMARK 3 8 2.3883 - 2.2844 1.00 3964 215 0.1828 0.2356 REMARK 3 9 2.2844 - 2.1964 0.63 2606 142 0.1973 0.2665 REMARK 3 10 2.1964 - 2.1206 1.00 4007 201 0.1972 0.2220 REMARK 3 11 2.1206 - 2.0543 0.99 4040 199 0.2189 0.2597 REMARK 3 12 2.0543 - 1.9956 0.99 4035 186 0.2171 0.2815 REMARK 3 13 1.9956 - 1.9431 0.72 2948 135 0.2441 0.3211 REMARK 3 14 1.9431 - 1.8956 0.78 3121 165 0.2576 0.2940 REMARK 3 15 1.8956 - 1.8525 0.37 1542 72 0.2791 0.3673 REMARK 3 16 1.8525 - 1.8131 0.58 2312 114 0.2784 0.2947 REMARK 3 17 1.8131 - 1.7768 0.44 1817 101 0.2863 0.3080 REMARK 3 18 1.7768 - 1.7433 0.33 1328 68 0.2983 0.3032 REMARK 3 19 1.7433 - 1.7122 0.23 916 47 0.3206 0.3760 REMARK 3 20 1.7122 - 1.6832 0.12 484 24 0.3167 0.4119 REMARK 3 21 1.6832 - 1.6560 0.06 231 14 0.3205 0.3608 REMARK 3 22 1.6560 - 1.6305 0.01 59 3 0.2785 0.1450 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6081 REMARK 3 ANGLE : 0.966 8220 REMARK 3 CHIRALITY : 0.058 933 REMARK 3 PLANARITY : 0.006 1075 REMARK 3 DIHEDRAL : 17.564 3762 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 2.7758 -15.2766 12.1225 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.1982 REMARK 3 T33: 0.1805 T12: 0.0336 REMARK 3 T13: 0.0281 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: -0.0628 L22: 0.4506 REMARK 3 L33: 0.5239 L12: 0.0723 REMARK 3 L13: 0.0404 L23: -0.0145 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: 0.0302 S13: 0.0190 REMARK 3 S21: -0.0084 S22: -0.0419 S23: 0.0111 REMARK 3 S31: -0.0034 S32: 0.0184 S33: 0.0341 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200008841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64980 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.631 REMARK 200 RESOLUTION RANGE LOW (A) : 72.266 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 31.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.19100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1OK7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES 50MM PH 6, CACL2 50MM, PEG400 28%+ REMARK 280 HAMPTON RESEARCH PEG ION KIT B3 (1 MICROLITER): 0.2M LITHIUM REMARK 280 NITRATE, 20% PEG 3350 PH 7.1, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 OE1 OE2 REMARK 470 LYS A 12 CE NZ REMARK 470 GLN A 15 CD OE1 NE2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 25 CG CD REMARK 470 ASP A 39 OD1 OD2 REMARK 470 GLU A 93 CD OE1 OE2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 ASN A 118 CG OD1 ND2 REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 GLU A 166 CD OE1 OE2 REMARK 470 SER A 187 OG REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 ASN A 212 CG OD1 ND2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 276 CD OE1 OE2 REMARK 470 GLN A 299 CD OE1 NE2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 39 OD1 OD2 REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 ARG B 96 CD NE CZ NH1 NH2 REMARK 470 ASN B 118 CG OD1 ND2 REMARK 470 ASP B 120 CG OD1 OD2 REMARK 470 ASP B 121 CG OD1 OD2 REMARK 470 GLU B 140 OE1 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 ASN B 251 CG OD1 ND2 REMARK 470 GLU B 314 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 24 82.63 59.06 REMARK 500 ASP A 39 -138.89 57.15 REMARK 500 LEU A 49 -27.21 76.33 REMARK 500 ARG A 103 40.54 -106.73 REMARK 500 GLN A 149 34.94 -149.71 REMARK 500 GLN A 149 34.94 -148.45 REMARK 500 ASN A 251 69.71 -118.63 REMARK 500 GLU A 287 109.55 -49.14 REMARK 500 LYS A 332 68.83 -117.03 REMARK 500 THR A 341 -62.92 -127.27 REMARK 500 ASP B 39 -139.57 56.97 REMARK 500 LEU B 49 -28.70 77.25 REMARK 500 ASP B 208 -166.47 -112.89 REMARK 500 GLU B 287 109.46 -46.82 REMARK 500 LYS B 332 66.76 -113.23 REMARK 500 THR B 341 -63.45 -125.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 708 DISTANCE = 6.60 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 402 REMARK 610 1PE A 404 REMARK 610 1PE A 405 REMARK 610 1PE B 401 REMARK 610 1PE B 402 REMARK 610 1PE B 403 REMARK 610 1PE B 404 REMARK 610 1PE B 405 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE H 1 and GLN H 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLN H 2 and ALC H 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALC H 3 and ASP H 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE I 1 and GLN I 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLN I 2 and ALC I 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALC I 3 and ASP I 4 DBREF 6FVM A 1 366 UNP P0A990 DPO3B_ECO57 1 366 DBREF 6FVM B 1 366 UNP P0A990 DPO3B_ECO57 1 366 DBREF 6FVM H 1 6 PDB 6FVM 6FVM 1 6 DBREF 6FVM I 1 6 PDB 6FVM 6FVM 1 6 SEQADV 6FVM SER A -1 UNP P0A990 EXPRESSION TAG SEQADV 6FVM HIS A 0 UNP P0A990 EXPRESSION TAG SEQADV 6FVM PRO A 346 UNP P0A990 SER 346 ENGINEERED MUTATION SEQADV 6FVM SER B -1 UNP P0A990 EXPRESSION TAG SEQADV 6FVM HIS B 0 UNP P0A990 EXPRESSION TAG SEQADV 6FVM PRO B 346 UNP P0A990 SER 346 ENGINEERED MUTATION SEQRES 1 A 368 SER HIS MET LYS PHE THR VAL GLU ARG GLU HIS LEU LEU SEQRES 2 A 368 LYS PRO LEU GLN GLN VAL SER GLY PRO LEU GLY GLY ARG SEQRES 3 A 368 PRO THR LEU PRO ILE LEU GLY ASN LEU LEU LEU GLN VAL SEQRES 4 A 368 ALA ASP GLY THR LEU SER LEU THR GLY THR ASP LEU GLU SEQRES 5 A 368 MET GLU MET VAL ALA ARG VAL ALA LEU VAL GLN PRO HIS SEQRES 6 A 368 GLU PRO GLY ALA THR THR VAL PRO ALA ARG LYS PHE PHE SEQRES 7 A 368 ASP ILE CYS ARG GLY LEU PRO GLU GLY ALA GLU ILE ALA SEQRES 8 A 368 VAL GLN LEU GLU GLY GLU ARG MET LEU VAL ARG SER GLY SEQRES 9 A 368 ARG SER ARG PHE SER LEU SER THR LEU PRO ALA ALA ASP SEQRES 10 A 368 PHE PRO ASN LEU ASP ASP TRP GLN SER GLU VAL GLU PHE SEQRES 11 A 368 THR LEU PRO GLN ALA THR MET LYS ARG LEU ILE GLU ALA SEQRES 12 A 368 THR GLN PHE SER MET ALA HIS GLN ASP VAL ARG TYR TYR SEQRES 13 A 368 LEU ASN GLY MET LEU PHE GLU THR GLU GLY GLU GLU LEU SEQRES 14 A 368 ARG THR VAL ALA THR ASP GLY HIS ARG LEU ALA VAL CYS SEQRES 15 A 368 SER MET PRO ILE GLY GLN SER LEU PRO SER HIS SER VAL SEQRES 16 A 368 ILE VAL PRO ARG LYS GLY VAL ILE GLU LEU MET ARG MET SEQRES 17 A 368 LEU ASP GLY GLY ASP ASN PRO LEU ARG VAL GLN ILE GLY SEQRES 18 A 368 SER ASN ASN ILE ARG ALA HIS VAL GLY ASP PHE ILE PHE SEQRES 19 A 368 THR SER LYS LEU VAL ASP GLY ARG PHE PRO ASP TYR ARG SEQRES 20 A 368 ARG VAL LEU PRO LYS ASN PRO ASP LYS HIS LEU GLU ALA SEQRES 21 A 368 GLY CYS ASP LEU LEU LYS GLN ALA PHE ALA ARG ALA ALA SEQRES 22 A 368 ILE LEU SER ASN GLU LYS PHE ARG GLY VAL ARG LEU TYR SEQRES 23 A 368 VAL SER GLU ASN GLN LEU LYS ILE THR ALA ASN ASN PRO SEQRES 24 A 368 GLU GLN GLU GLU ALA GLU GLU ILE LEU ASP VAL THR TYR SEQRES 25 A 368 SER GLY ALA GLU MET GLU ILE GLY PHE ASN VAL SER TYR SEQRES 26 A 368 VAL LEU ASP VAL LEU ASN ALA LEU LYS CYS GLU ASN VAL SEQRES 27 A 368 ARG MET MET LEU THR ASP SER VAL SER PRO VAL GLN ILE SEQRES 28 A 368 GLU ASP ALA ALA SER GLN SER ALA ALA TYR VAL VAL MET SEQRES 29 A 368 PRO MET ARG LEU SEQRES 1 B 368 SER HIS MET LYS PHE THR VAL GLU ARG GLU HIS LEU LEU SEQRES 2 B 368 LYS PRO LEU GLN GLN VAL SER GLY PRO LEU GLY GLY ARG SEQRES 3 B 368 PRO THR LEU PRO ILE LEU GLY ASN LEU LEU LEU GLN VAL SEQRES 4 B 368 ALA ASP GLY THR LEU SER LEU THR GLY THR ASP LEU GLU SEQRES 5 B 368 MET GLU MET VAL ALA ARG VAL ALA LEU VAL GLN PRO HIS SEQRES 6 B 368 GLU PRO GLY ALA THR THR VAL PRO ALA ARG LYS PHE PHE SEQRES 7 B 368 ASP ILE CYS ARG GLY LEU PRO GLU GLY ALA GLU ILE ALA SEQRES 8 B 368 VAL GLN LEU GLU GLY GLU ARG MET LEU VAL ARG SER GLY SEQRES 9 B 368 ARG SER ARG PHE SER LEU SER THR LEU PRO ALA ALA ASP SEQRES 10 B 368 PHE PRO ASN LEU ASP ASP TRP GLN SER GLU VAL GLU PHE SEQRES 11 B 368 THR LEU PRO GLN ALA THR MET LYS ARG LEU ILE GLU ALA SEQRES 12 B 368 THR GLN PHE SER MET ALA HIS GLN ASP VAL ARG TYR TYR SEQRES 13 B 368 LEU ASN GLY MET LEU PHE GLU THR GLU GLY GLU GLU LEU SEQRES 14 B 368 ARG THR VAL ALA THR ASP GLY HIS ARG LEU ALA VAL CYS SEQRES 15 B 368 SER MET PRO ILE GLY GLN SER LEU PRO SER HIS SER VAL SEQRES 16 B 368 ILE VAL PRO ARG LYS GLY VAL ILE GLU LEU MET ARG MET SEQRES 17 B 368 LEU ASP GLY GLY ASP ASN PRO LEU ARG VAL GLN ILE GLY SEQRES 18 B 368 SER ASN ASN ILE ARG ALA HIS VAL GLY ASP PHE ILE PHE SEQRES 19 B 368 THR SER LYS LEU VAL ASP GLY ARG PHE PRO ASP TYR ARG SEQRES 20 B 368 ARG VAL LEU PRO LYS ASN PRO ASP LYS HIS LEU GLU ALA SEQRES 21 B 368 GLY CYS ASP LEU LEU LYS GLN ALA PHE ALA ARG ALA ALA SEQRES 22 B 368 ILE LEU SER ASN GLU LYS PHE ARG GLY VAL ARG LEU TYR SEQRES 23 B 368 VAL SER GLU ASN GLN LEU LYS ILE THR ALA ASN ASN PRO SEQRES 24 B 368 GLU GLN GLU GLU ALA GLU GLU ILE LEU ASP VAL THR TYR SEQRES 25 B 368 SER GLY ALA GLU MET GLU ILE GLY PHE ASN VAL SER TYR SEQRES 26 B 368 VAL LEU ASP VAL LEU ASN ALA LEU LYS CYS GLU ASN VAL SEQRES 27 B 368 ARG MET MET LEU THR ASP SER VAL SER PRO VAL GLN ILE SEQRES 28 B 368 GLU ASP ALA ALA SER GLN SER ALA ALA TYR VAL VAL MET SEQRES 29 B 368 PRO MET ARG LEU SEQRES 1 H 6 ACE GLN ALC ASP LEU PHE SEQRES 1 I 6 ACE GLN ALC ASP LEU PHE HET ACE H 1 3 HET ALC H 3 11 HET ACE I 1 3 HET ALC I 3 11 HET CA A 401 1 HET 1PE A 402 7 HET 1PE A 403 16 HET 1PE A 404 13 HET 1PE A 405 10 HET GOL A 406 6 HET 1PE B 401 13 HET 1PE B 402 7 HET 1PE B 403 11 HET 1PE B 404 10 HET 1PE B 405 9 HETNAM ACE ACETYL GROUP HETNAM ALC 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID HETNAM CA CALCIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 ALC 2(C9 H17 N O2) FORMUL 5 CA CA 2+ FORMUL 6 1PE 9(C10 H22 O6) FORMUL 10 GOL C3 H8 O3 FORMUL 16 HOH *462(H2 O) HELIX 1 AA1 ARG A 7 GLY A 19 1 13 HELIX 2 AA2 LEU A 27 LEU A 30 5 4 HELIX 3 AA3 ALA A 72 LEU A 82 1 11 HELIX 4 AA4 PRO A 112 PHE A 116 5 5 HELIX 5 AA5 GLN A 132 ALA A 141 1 10 HELIX 6 AA6 THR A 142 MET A 146 5 5 HELIX 7 AA7 ARG A 152 LEU A 155 5 4 HELIX 8 AA8 ARG A 197 LEU A 207 1 11 HELIX 9 AA9 ASP A 243 LEU A 248 1 6 HELIX 10 AB1 CYS A 260 LEU A 273 1 14 HELIX 11 AB2 VAL A 321 LEU A 331 1 11 HELIX 12 AB3 ARG B 7 SER B 18 1 12 HELIX 13 AB4 LEU B 27 LEU B 30 5 4 HELIX 14 AB5 ALA B 72 LEU B 82 1 11 HELIX 15 AB6 PRO B 112 PHE B 116 5 5 HELIX 16 AB7 GLN B 132 GLN B 143 1 12 HELIX 17 AB8 PHE B 144 MET B 146 5 3 HELIX 18 AB9 ARG B 152 LEU B 155 5 4 HELIX 19 AC1 ARG B 197 LEU B 207 1 11 HELIX 20 AC2 ASP B 243 VAL B 247 5 5 HELIX 21 AC3 CYS B 260 LEU B 273 1 14 HELIX 22 AC4 VAL B 321 LEU B 331 1 11 SHEET 1 AA1 8 LYS A 2 GLU A 6 0 SHEET 2 AA1 8 GLU A 87 GLU A 93 -1 O VAL A 90 N PHE A 3 SHEET 3 AA1 8 ARG A 96 SER A 101 -1 O LEU A 98 N GLN A 91 SHEET 4 AA1 8 SER A 104 SER A 109 -1 O PHE A 106 N VAL A 99 SHEET 5 AA1 8 GLU B 301 ASP B 307 -1 O GLU B 301 N SER A 107 SHEET 6 AA1 8 GLN B 289 ASN B 295 -1 N ILE B 292 O GLU B 304 SHEET 7 AA1 8 GLY B 280 SER B 286 -1 N TYR B 284 O LYS B 291 SHEET 8 AA1 8 MET B 315 ASN B 320 -1 O ILE B 317 N LEU B 283 SHEET 1 AA2 8 GLY A 66 PRO A 71 0 SHEET 2 AA2 8 ASN A 32 ALA A 38 -1 N LEU A 35 O THR A 68 SHEET 3 AA2 8 THR A 41 THR A 47 -1 O SER A 43 N GLN A 36 SHEET 4 AA2 8 MET A 51 ALA A 58 -1 O VAL A 57 N LEU A 42 SHEET 5 AA2 8 PHE A 230 LYS A 235 -1 O THR A 233 N GLU A 52 SHEET 6 AA2 8 ASN A 222 VAL A 227 -1 N ALA A 225 O PHE A 232 SHEET 7 AA2 8 PRO A 213 GLY A 219 -1 N GLN A 217 O ARG A 224 SHEET 8 AA2 8 SER A 124 PRO A 131 -1 N VAL A 126 O ILE A 218 SHEET 1 AA3 7 THR A 309 SER A 311 0 SHEET 2 AA3 7 LYS A 254 GLY A 259 -1 N GLU A 257 O THR A 309 SHEET 3 AA3 7 ASN A 335 LEU A 340 -1 O MET A 338 N LEU A 256 SHEET 4 AA3 7 VAL A 347 ASP A 351 -1 O GLU A 350 N ARG A 337 SHEET 5 AA3 7 ALA A 357 VAL A 361 -1 O TYR A 359 N ILE A 349 SHEET 6 AA3 7 ARG A 176 PRO A 196 -1 N LEU A 177 O VAL A 360 SHEET 7 AA3 7 GLY A 157 THR A 172 -1 O GLY A 164 N LEU A 188 SHEET 1 AA4 8 MET A 315 ASN A 320 0 SHEET 2 AA4 8 GLY A 280 SER A 286 -1 N LEU A 283 O ILE A 317 SHEET 3 AA4 8 GLN A 289 ASN A 295 -1 O LYS A 291 N TYR A 284 SHEET 4 AA4 8 GLU A 301 ASP A 307 -1 O LEU A 306 N LEU A 290 SHEET 5 AA4 8 SER B 104 SER B 109 -1 O SER B 107 N GLU A 301 SHEET 6 AA4 8 ARG B 96 SER B 101 -1 N MET B 97 O LEU B 108 SHEET 7 AA4 8 GLU B 87 GLU B 93 -1 N GLN B 91 O LEU B 98 SHEET 8 AA4 8 LYS B 2 GLU B 6 -1 N PHE B 3 O VAL B 90 SHEET 1 AA5 8 GLY B 66 PRO B 71 0 SHEET 2 AA5 8 ASN B 32 ALA B 38 -1 N LEU B 35 O THR B 68 SHEET 3 AA5 8 THR B 41 THR B 47 -1 O SER B 43 N GLN B 36 SHEET 4 AA5 8 MET B 51 ALA B 58 -1 O VAL B 57 N LEU B 42 SHEET 5 AA5 8 PHE B 230 LYS B 235 -1 O THR B 233 N GLU B 52 SHEET 6 AA5 8 ASN B 222 VAL B 227 -1 N ALA B 225 O PHE B 232 SHEET 7 AA5 8 PRO B 213 GLY B 219 -1 N GLY B 219 O ASN B 222 SHEET 8 AA5 8 SER B 124 PRO B 131 -1 N PHE B 128 O VAL B 216 SHEET 1 AA6 7 THR B 309 TYR B 310 0 SHEET 2 AA6 7 LYS B 254 GLY B 259 -1 N GLU B 257 O THR B 309 SHEET 3 AA6 7 ASN B 335 LEU B 340 -1 O MET B 338 N LEU B 256 SHEET 4 AA6 7 VAL B 347 ASP B 351 -1 O GLN B 348 N MET B 339 SHEET 5 AA6 7 ALA B 357 VAL B 361 -1 O TYR B 359 N ILE B 349 SHEET 6 AA6 7 ARG B 176 PRO B 196 -1 N LEU B 177 O VAL B 360 SHEET 7 AA6 7 GLY B 157 THR B 172 -1 O GLY B 164 N LEU B 188 LINK C ACE H 1 N GLN H 2 1555 1555 1.33 LINK C GLN H 2 N ALC H 3 1555 1555 1.33 LINK C ALC H 3 N ASP H 4 1555 1555 1.33 LINK C ACE I 1 N GLN I 2 1555 1555 1.33 LINK C GLN I 2 N ALC I 3 1555 1555 1.33 LINK C ALC I 3 N ASP I 4 1555 1555 1.34 LINK CA CA A 401 O HOH A 542 1555 1555 3.06 SITE 1 AC1 4 GLU A 6 HIS A 9 GLN A 61 HOH A 542 SITE 1 AC2 2 ARG A 80 LEU A 82 SITE 1 AC3 6 HIS A 9 PRO A 28 ARG A 56 ALA A 58 SITE 2 AC3 6 VAL A 60 ASP A 229 SITE 1 AC4 6 SER A 18 LEU A 21 GLY A 22 ARG A 73 SITE 2 AC4 6 PHE A 76 HOH A 605 SITE 1 AC5 2 TYR A 284 LYS A 291 SITE 1 AC6 5 SER A 192 ILE A 194 GLY A 239 PHE A 241 SITE 2 AC6 5 HOH A 525 SITE 1 AC7 7 SER B 18 LEU B 21 GLY B 23 ARG B 73 SITE 2 AC7 7 PHE B 76 ARG B 80 HOH B 505 SITE 1 AC8 3 GLU B 161 SER B 190 ARG B 245 SITE 1 AC9 5 HIS B 9 ARG B 56 ALA B 58 VAL B 60 SITE 2 AC9 5 ASP B 229 SITE 1 AD1 4 PRO A 297 HOH A 672 PRO B 83 GLU B 84 SITE 1 AD2 8 SER B 192 GLY B 239 ARG B 240 PHE B 241 SITE 2 AD2 8 PRO B 242 ASP B 243 HOH B 512 HOH B 562 SITE 1 AD3 13 HIS A 175 TYR A 323 GLU A 334 ASN A 335 SITE 2 AD3 13 ALA A 353 MET A 362 PRO A 363 MET A 364 SITE 3 AD3 13 ARG A 365 HOH A 501 HOH A 520 HOH A 555 SITE 4 AD3 13 ALC H 3 SITE 1 AD4 12 HIS A 175 TYR A 323 ALA A 353 MET A 362 SITE 2 AD4 12 PRO A 363 MET A 364 ARG A 365 HOH A 501 SITE 3 AD4 12 HOH A 520 HOH A 555 ACE H 1 ASP H 4 SITE 1 AD5 11 GLY A 174 HIS A 175 ALA A 353 MET A 362 SITE 2 AD5 11 PRO A 363 ARG A 365 ACE H 1 GLN H 2 SITE 3 AD5 11 LEU H 5 PHE H 6 HOH H 101 SITE 1 AD6 13 HIS B 175 TYR B 323 GLU B 334 ASN B 335 SITE 2 AD6 13 MET B 362 PRO B 363 MET B 364 ARG B 365 SITE 3 AD6 13 ALC I 3 HOH I 102 HOH I 103 HOH I 105 SITE 4 AD6 13 HOH I 106 SITE 1 AD7 14 HIS B 175 TYR B 323 GLU B 334 ASN B 335 SITE 2 AD7 14 MET B 362 PRO B 363 MET B 364 ARG B 365 SITE 3 AD7 14 ACE I 1 ASP I 4 HOH I 102 HOH I 103 SITE 4 AD7 14 HOH I 105 HOH I 106 SITE 1 AD8 12 GLU B 334 ASN B 335 MET B 362 PRO B 363 SITE 2 AD8 12 ARG B 365 HOH B 580 ACE I 1 GLN I 2 SITE 3 AD8 12 LEU I 5 PHE I 6 HOH I 104 HOH I 107 CRYST1 34.336 78.653 80.182 113.26 97.82 95.97 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029124 0.003044 0.005788 0.00000 SCALE2 0.000000 0.012783 0.005834 0.00000 SCALE3 0.000000 0.000000 0.013838 0.00000