HEADER SIGNALING PROTEIN 08-MAR-18 6FX0 TITLE STRUCTURE-BASED DESIGN OF TRIFAROTENE (CD5789), A POTENT AND SELECTIVE TITLE 2 RAR GAMMA AGONIST FOR THE TREATMENT OF ACNE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP B MEMBER 3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RARG, NR1B3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RETINOIC LIGAND COMPLEX, DRUG DESIGN, SELECTIVITY, AGONIST, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.CHANTALAT,E.THOREAU REVDAT 1 23-MAY-18 6FX0 0 JRNL AUTH E.THOREAU,J.M.ARLABOSSE,C.BOUIX-PETER,S.CHAMBON,L.CHANTALAT, JRNL AUTH 2 S.DAVER,L.DUMAIS,G.DUVERT,A.FERET,G.OUVRY,J.PASCAU,C.RAFFIN, JRNL AUTH 3 N.RODEVILLE,C.SOULET,S.TABET,S.TALANO,T.PORTAL JRNL TITL STRUCTURE-BASED DESIGN OF TRIFAROTENE (CD5789), A POTENT AND JRNL TITL 2 SELECTIVE RAR GAMMA AGONIST FOR THE TREATMENT OF ACNE. JRNL REF BIOORG. MED. CHEM. LETT. V. 28 1736 2018 JRNL REFN ESSN 1464-3405 JRNL PMID 29706423 JRNL DOI 10.1016/J.BMCL.2018.04.036 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 23058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.49 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2631 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3552 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2500 REMARK 3 BIN R VALUE (WORKING SET) : 0.3499 REMARK 3 BIN FREE R VALUE : 0.4590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25720 REMARK 3 B22 (A**2) : -0.25720 REMARK 3 B33 (A**2) : 0.51450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.169 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.134 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2011 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2730 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 747 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 47 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 310 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2011 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 268 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2665 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.83 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.28 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.4090 -8.5874 -14.0715 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0772 REMARK 3 T33: 0.0669 T12: 0.0329 REMARK 3 T13: -0.0117 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.9817 L22: 0.6799 REMARK 3 L33: 1.5725 L12: 0.4098 REMARK 3 L13: -0.3717 L23: -0.2742 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: -0.0059 S13: -0.0531 REMARK 3 S21: 0.0216 S22: -0.0015 S23: -0.0183 REMARK 3 S31: -0.0197 S32: -0.1080 S33: 0.0225 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.91000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.03000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.45500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.03000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.36500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.03000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.03000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.45500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.03000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.03000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 118.36500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 LEU A 8 REMARK 465 PHE A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 TYR A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 PHE A 25 REMARK 465 PRO A 26 REMARK 465 PHE A 27 REMARK 465 ALA A 28 REMARK 465 PHE A 29 REMARK 465 PRO A 30 REMARK 465 GLY A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 ARG A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 PRO A 37 REMARK 465 PRO A 38 REMARK 465 PHE A 39 REMARK 465 GLU A 40 REMARK 465 MET A 41 REMARK 465 LEU A 42 REMARK 465 SER A 43 REMARK 465 PRO A 44 REMARK 465 SER A 45 REMARK 465 PHE A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 LEU A 49 REMARK 465 GLY A 50 REMARK 465 GLN A 51 REMARK 465 PRO A 52 REMARK 465 ASP A 53 REMARK 465 LEU A 54 REMARK 465 PRO A 55 REMARK 465 LYS A 56 REMARK 465 GLU A 57 REMARK 465 MET A 58 REMARK 465 ALA A 59 REMARK 465 SER A 60 REMARK 465 LEU A 61 REMARK 465 SER A 62 REMARK 465 VAL A 63 REMARK 465 GLU A 64 REMARK 465 THR A 65 REMARK 465 GLN A 66 REMARK 465 SER A 67 REMARK 465 THR A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 MET A 73 REMARK 465 VAL A 74 REMARK 465 PRO A 75 REMARK 465 SER A 76 REMARK 465 SER A 77 REMARK 465 PRO A 78 REMARK 465 SER A 79 REMARK 465 PRO A 80 REMARK 465 PRO A 81 REMARK 465 PRO A 82 REMARK 465 PRO A 83 REMARK 465 PRO A 84 REMARK 465 ARG A 85 REMARK 465 VAL A 86 REMARK 465 TYR A 87 REMARK 465 LYS A 88 REMARK 465 PRO A 89 REMARK 465 CYS A 90 REMARK 465 PHE A 91 REMARK 465 VAL A 92 REMARK 465 CYS A 93 REMARK 465 ASN A 94 REMARK 465 ASP A 95 REMARK 465 LYS A 96 REMARK 465 SER A 97 REMARK 465 SER A 98 REMARK 465 GLY A 99 REMARK 465 TYR A 100 REMARK 465 HIS A 101 REMARK 465 TYR A 102 REMARK 465 GLY A 103 REMARK 465 VAL A 104 REMARK 465 SER A 105 REMARK 465 SER A 106 REMARK 465 CYS A 107 REMARK 465 GLU A 108 REMARK 465 GLY A 109 REMARK 465 CYS A 110 REMARK 465 LYS A 111 REMARK 465 GLY A 112 REMARK 465 PHE A 113 REMARK 465 PHE A 114 REMARK 465 ARG A 115 REMARK 465 ARG A 116 REMARK 465 SER A 117 REMARK 465 ILE A 118 REMARK 465 GLN A 119 REMARK 465 LYS A 120 REMARK 465 ASN A 121 REMARK 465 MET A 122 REMARK 465 VAL A 123 REMARK 465 TYR A 124 REMARK 465 THR A 125 REMARK 465 CYS A 126 REMARK 465 HIS A 127 REMARK 465 ARG A 128 REMARK 465 ASP A 129 REMARK 465 LYS A 130 REMARK 465 ASN A 131 REMARK 465 CYS A 132 REMARK 465 ILE A 133 REMARK 465 ILE A 134 REMARK 465 ASN A 135 REMARK 465 LYS A 136 REMARK 465 VAL A 137 REMARK 465 THR A 138 REMARK 465 ARG A 139 REMARK 465 ASN A 140 REMARK 465 ARG A 141 REMARK 465 CYS A 142 REMARK 465 GLN A 143 REMARK 465 TYR A 144 REMARK 465 CYS A 145 REMARK 465 ARG A 146 REMARK 465 LEU A 147 REMARK 465 GLN A 148 REMARK 465 LYS A 149 REMARK 465 CYS A 150 REMARK 465 PHE A 151 REMARK 465 GLU A 152 REMARK 465 VAL A 153 REMARK 465 GLY A 154 REMARK 465 MET A 155 REMARK 465 SER A 156 REMARK 465 LYS A 157 REMARK 465 GLU A 158 REMARK 465 ALA A 159 REMARK 465 VAL A 160 REMARK 465 ARG A 161 REMARK 465 ASN A 162 REMARK 465 ASP A 163 REMARK 465 ARG A 164 REMARK 465 ASN A 165 REMARK 465 LYS A 166 REMARK 465 LYS A 167 REMARK 465 LYS A 168 REMARK 465 LYS A 169 REMARK 465 GLU A 170 REMARK 465 VAL A 171 REMARK 465 LYS A 172 REMARK 465 GLU A 173 REMARK 465 GLU A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 PRO A 177 REMARK 465 ASP A 178 REMARK 465 SER A 179 REMARK 465 ASN A 418 REMARK 465 PRO A 419 REMARK 465 GLU A 420 REMARK 465 MET A 421 REMARK 465 PHE A 422 REMARK 465 GLU A 423 REMARK 465 ASP A 424 REMARK 465 ASP A 425 REMARK 465 SER A 426 REMARK 465 SER A 427 REMARK 465 GLN A 428 REMARK 465 PRO A 429 REMARK 465 GLY A 430 REMARK 465 PRO A 431 REMARK 465 HIS A 432 REMARK 465 PRO A 433 REMARK 465 ASN A 434 REMARK 465 ALA A 435 REMARK 465 SER A 436 REMARK 465 SER A 437 REMARK 465 GLU A 438 REMARK 465 ASP A 439 REMARK 465 GLU A 440 REMARK 465 VAL A 441 REMARK 465 PRO A 442 REMARK 465 GLY A 443 REMARK 465 GLY A 444 REMARK 465 GLN A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 465 GLY A 448 REMARK 465 GLY A 449 REMARK 465 LEU A 450 REMARK 465 LYS A 451 REMARK 465 SER A 452 REMARK 465 PRO A 453 REMARK 465 ALA A 454 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 180 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 215 53.27 32.35 REMARK 500 SER A 215 54.10 31.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E9T A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 502 DBREF 6FX0 A 1 454 UNP P13631 RARG_HUMAN 1 454 SEQRES 1 A 454 MET ALA THR ASN LYS GLU ARG LEU PHE ALA ALA GLY ALA SEQRES 2 A 454 LEU GLY PRO GLY SER GLY TYR PRO GLY ALA GLY PHE PRO SEQRES 3 A 454 PHE ALA PHE PRO GLY ALA LEU ARG GLY SER PRO PRO PHE SEQRES 4 A 454 GLU MET LEU SER PRO SER PHE ARG GLY LEU GLY GLN PRO SEQRES 5 A 454 ASP LEU PRO LYS GLU MET ALA SER LEU SER VAL GLU THR SEQRES 6 A 454 GLN SER THR SER SER GLU GLU MET VAL PRO SER SER PRO SEQRES 7 A 454 SER PRO PRO PRO PRO PRO ARG VAL TYR LYS PRO CYS PHE SEQRES 8 A 454 VAL CYS ASN ASP LYS SER SER GLY TYR HIS TYR GLY VAL SEQRES 9 A 454 SER SER CYS GLU GLY CYS LYS GLY PHE PHE ARG ARG SER SEQRES 10 A 454 ILE GLN LYS ASN MET VAL TYR THR CYS HIS ARG ASP LYS SEQRES 11 A 454 ASN CYS ILE ILE ASN LYS VAL THR ARG ASN ARG CYS GLN SEQRES 12 A 454 TYR CYS ARG LEU GLN LYS CYS PHE GLU VAL GLY MET SER SEQRES 13 A 454 LYS GLU ALA VAL ARG ASN ASP ARG ASN LYS LYS LYS LYS SEQRES 14 A 454 GLU VAL LYS GLU GLU GLY SER PRO ASP SER TYR GLU LEU SEQRES 15 A 454 SER PRO GLN LEU GLU GLU LEU ILE THR LYS VAL SER LYS SEQRES 16 A 454 ALA HIS GLN GLU THR PHE PRO SER LEU CYS GLN LEU GLY SEQRES 17 A 454 LYS TYR THR THR ASN SER SER ALA ASP HIS ARG VAL GLN SEQRES 18 A 454 LEU ASP LEU GLY LEU TRP ASP LYS PHE SER GLU LEU ALA SEQRES 19 A 454 THR LYS CYS ILE ILE LYS ILE VAL GLU PHE ALA LYS ARG SEQRES 20 A 454 LEU PRO GLY PHE THR GLY LEU SER ILE ALA ASP GLN ILE SEQRES 21 A 454 THR LEU LEU LYS ALA ALA CYS LEU ASP ILE LEU MET LEU SEQRES 22 A 454 ARG ILE CYS THR ARG TYR THR PRO GLU GLN ASP THR MET SEQRES 23 A 454 THR PHE SER ASP GLY LEU THR LEU ASN ARG THR GLN MET SEQRES 24 A 454 HIS ASN ALA GLY PHE GLY PRO LEU THR ASP LEU VAL PHE SEQRES 25 A 454 ALA PHE ALA GLY GLN LEU LEU PRO LEU GLU MET ASP ASP SEQRES 26 A 454 THR GLU THR GLY LEU LEU SER ALA ILE CYS LEU ILE CYS SEQRES 27 A 454 GLY ASP ARG MET ASP LEU GLU GLU PRO GLU LYS VAL ASP SEQRES 28 A 454 LYS LEU GLN GLU PRO LEU LEU GLU ALA LEU ARG LEU TYR SEQRES 29 A 454 ALA ARG ARG ARG ARG PRO SER GLN PRO TYR MET PHE PRO SEQRES 30 A 454 ARG MET LEU MET LYS ILE THR ASP LEU ARG GLY ILE SER SEQRES 31 A 454 THR LYS GLY ALA GLU ARG ALA ILE THR LEU LYS MET GLU SEQRES 32 A 454 ILE PRO GLY PRO MET PRO PRO LEU ILE ARG GLU MET LEU SEQRES 33 A 454 GLU ASN PRO GLU MET PHE GLU ASP ASP SER SER GLN PRO SEQRES 34 A 454 GLY PRO HIS PRO ASN ALA SER SER GLU ASP GLU VAL PRO SEQRES 35 A 454 GLY GLY GLN GLY LYS GLY GLY LEU LYS SER PRO ALA HET E9T A 501 30 HET PG4 A 502 13 HETNAM E9T 6-[3-(1-ADAMANTYL)-4-OXIDANYL-PHENYL]NAPHTHALENE-2- HETNAM 2 E9T CARBOXYLIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 E9T C27 H26 O3 FORMUL 3 PG4 C8 H18 O5 FORMUL 4 HOH *294(H2 O) HELIX 1 AA1 SER A 183 THR A 200 1 18 HELIX 2 AA2 SER A 203 LEU A 207 5 5 HELIX 3 AA3 ASP A 223 LEU A 248 1 26 HELIX 4 AA4 GLY A 250 LEU A 254 5 5 HELIX 5 AA5 SER A 255 THR A 277 1 23 HELIX 6 AA6 ARG A 296 ALA A 302 1 7 HELIX 7 AA7 PHE A 304 PRO A 306 5 3 HELIX 8 AA8 LEU A 307 LEU A 319 1 13 HELIX 9 AA9 PRO A 320 GLU A 322 5 3 HELIX 10 AB1 ASP A 324 ILE A 337 1 14 HELIX 11 AB2 GLU A 346 ARG A 369 1 24 HELIX 12 AB3 TYR A 374 MET A 402 1 29 HELIX 13 AB4 PRO A 409 GLU A 417 1 9 SHEET 1 AA1 3 TYR A 279 THR A 280 0 SHEET 2 AA1 3 THR A 285 THR A 287 -1 O THR A 285 N THR A 280 SHEET 3 AA1 3 THR A 293 ASN A 295 -1 O LEU A 294 N MET A 286 SITE 1 AC1 16 PHE A 201 PHE A 230 ALA A 234 CYS A 237 SITE 2 AC1 16 LEU A 268 LEU A 271 MET A 272 ILE A 275 SITE 3 AC1 16 ARG A 278 PHE A 288 SER A 289 PHE A 304 SITE 4 AC1 16 GLY A 393 LEU A 400 HOH A 617 HOH A 645 SITE 1 AC2 8 ILE A 238 LYS A 264 CYS A 267 PRO A 377 SITE 2 AC2 8 LEU A 380 LEU A 411 MET A 415 HOH A 642 CRYST1 60.060 60.060 157.820 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016650 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006336 0.00000