HEADER HYDROLASE 09-MAR-18 6FXH TITLE HUMAN CYTOSOLIC 5'-NUCLEOTIDASE II SOAKED WITH 10MM 3-PHENYL-N-(9H- TITLE 2 PURIN-6-YL)BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC PURINE 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOSOLIC 5'-NUCLEOTIDASE II; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5C2, NT5B, NT5CP, PNT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28A-LIC P28A-LIC KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.AGHAJARI,P.PREETI REVDAT 2 17-JAN-24 6FXH 1 LINK REVDAT 1 06-MAR-19 6FXH 0 JRNL AUTH R.GUILLON,R.RAHIMOVA,D.EGRON,S.ROUANET,C.DUMONTET, JRNL AUTH 2 N.AGHAJARI,L.P.JORDHEIM,L.CHALOIN,S.PEYROTTES JRNL TITL LEAD OPTIMIZATION AND BIOLOGICAL EVALUATION OF JRNL TITL 2 FRAGMENT-BASED CN-II INHIBITORS. JRNL REF EUR J MED CHEM V. 168 28 2019 JRNL REFN ISSN 1768-3254 JRNL PMID 30798051 JRNL DOI 10.1016/J.EJMECH.2019.02.040 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 32600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7621 - 5.2637 0.91 2585 137 0.1841 0.2121 REMARK 3 2 5.2637 - 4.1787 0.96 2608 137 0.1408 0.1938 REMARK 3 3 4.1787 - 3.6507 0.96 2583 136 0.1324 0.1751 REMARK 3 4 3.6507 - 3.3170 0.96 2607 137 0.1526 0.2094 REMARK 3 5 3.3170 - 3.0793 0.97 2583 136 0.1750 0.2509 REMARK 3 6 3.0793 - 2.8977 0.98 2628 138 0.1801 0.2469 REMARK 3 7 2.8977 - 2.7526 0.98 2587 137 0.1824 0.2485 REMARK 3 8 2.7526 - 2.6328 0.97 2613 137 0.1925 0.2970 REMARK 3 9 2.6328 - 2.5315 0.97 2579 136 0.2243 0.3218 REMARK 3 10 2.5315 - 2.4441 0.96 2543 135 0.2677 0.3349 REMARK 3 11 2.4441 - 2.3677 0.95 2520 133 0.3103 0.3897 REMARK 3 12 2.3677 - 2.3000 0.95 2532 133 0.3542 0.4282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4052 REMARK 3 ANGLE : 0.844 5468 REMARK 3 CHIRALITY : 0.051 579 REMARK 3 PLANARITY : 0.005 686 REMARK 3 DIHEDRAL : 6.460 2382 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 2:489) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5419 25.1099 45.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.2322 T22: 0.2078 REMARK 3 T33: 0.2057 T12: -0.0194 REMARK 3 T13: -0.0042 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.5524 L22: 0.4369 REMARK 3 L33: 0.3723 L12: 0.0248 REMARK 3 L13: -0.1378 L23: 0.1403 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: -0.0113 S13: 0.0113 REMARK 3 S21: -0.1419 S22: 0.0068 S23: 0.0192 REMARK 3 S31: -0.1211 S32: 0.0265 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200008887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32680 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.751 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2J2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGSO4, TRIS AND LIGAND, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.70000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.70000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.45000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.70000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.45000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -444.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 129.40000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 129.40000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 GLU A 412 REMARK 465 ARG A 413 REMARK 465 VAL A 490 REMARK 465 GLU A 491 REMARK 465 HIS A 492 REMARK 465 THR A 493 REMARK 465 HIS A 494 REMARK 465 VAL A 495 REMARK 465 ASP A 496 REMARK 465 ILE A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 MET A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ASN A 508 REMARK 465 ARG A 509 REMARK 465 THR A 510 REMARK 465 SER A 511 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 PHE A 514 REMARK 465 LYS A 515 REMARK 465 ASP A 516 REMARK 465 THR A 517 REMARK 465 ASP A 518 REMARK 465 TYR A 519 REMARK 465 LYS A 520 REMARK 465 ARG A 521 REMARK 465 HIS A 522 REMARK 465 GLN A 523 REMARK 465 LEU A 524 REMARK 465 THR A 525 REMARK 465 ARG A 526 REMARK 465 SER A 527 REMARK 465 ILE A 528 REMARK 465 SER A 529 REMARK 465 GLU A 530 REMARK 465 ILE A 531 REMARK 465 LYS A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 LEU A 536 REMARK 465 PHE A 537 REMARK 465 PRO A 538 REMARK 465 LEU A 539 REMARK 465 ALA A 540 REMARK 465 PRO A 541 REMARK 465 GLN A 542 REMARK 465 GLU A 543 REMARK 465 ILE A 544 REMARK 465 THR A 545 REMARK 465 HIS A 546 REMARK 465 CYS A 547 REMARK 465 HIS A 548 REMARK 465 ASP A 549 REMARK 465 GLU A 550 REMARK 465 ASP A 551 REMARK 465 ASP A 552 REMARK 465 ASP A 553 REMARK 465 GLU A 554 REMARK 465 GLU A 555 REMARK 465 GLU A 556 REMARK 465 GLU A 557 REMARK 465 GLU A 558 REMARK 465 GLU A 559 REMARK 465 GLU A 560 REMARK 465 GLU A 561 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 LEU A 406 CG CD1 CD2 REMARK 470 PRO A 414 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 414 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 53 -66.83 -106.04 REMARK 500 THR A 56 -76.06 -117.10 REMARK 500 ASN A 221 57.33 -149.34 REMARK 500 ILE A 357 -62.73 -103.43 REMARK 500 LEU A 402 -55.12 -172.23 REMARK 500 ILE A 416 93.39 -52.52 REMARK 500 SER A 417 -62.38 161.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD2 REMARK 620 2 ASP A 54 O 91.5 REMARK 620 3 ASP A 351 OD1 90.8 86.3 REMARK 620 4 HOH A 725 O 90.5 177.9 94.3 REMARK 620 5 HOH A 752 O 89.9 90.1 176.3 89.4 REMARK 620 6 HOH A 769 O 177.3 88.8 91.9 89.1 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 733 O REMARK 620 2 HOH A 876 O 129.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 611 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CQZ RELATED DB: PDB REMARK 900 SAME MOLECULE, DIFFERENT LIGAND REMARK 900 RELATED ID: 5CR7 RELATED DB: PDB REMARK 900 SAME MOLECULE, DIFFERENT LIGAND REMARK 900 RELATED ID: 4H4B RELATED DB: PDB REMARK 900 SAME MOLECULE, DIFFERENT LIGAND REMARK 900 RELATED ID: 6FIR RELATED DB: PDB REMARK 900 SAME MOLECULE, DIFFERENT LIGAND REMARK 900 RELATED ID: 6FIS RELATED DB: PDB REMARK 900 SAME MOLECULE, DIFFERENT LIGAND REMARK 900 RELATED ID: 6FIU RELATED DB: PDB REMARK 900 SAME MOLECULE, DIFFERENT LIGAND REMARK 900 RELATED ID: 6FIW RELATED DB: PDB REMARK 900 SAME MOLECULE, DIFFERENT LIGAND REMARK 900 RELATED ID: 2J2C RELATED DB: PDB REMARK 900 SAME MOLECULE DBREF 6FXH A 1 561 UNP P49902 5NTC_HUMAN 1 561 SEQRES 1 A 561 MET SER THR SER TRP SER ASP ARG LEU GLN ASN ALA ALA SEQRES 2 A 561 ASP MET PRO ALA ASN MET ASP LYS HIS ALA LEU LYS LYS SEQRES 3 A 561 TYR ARG ARG GLU ALA TYR HIS ARG VAL PHE VAL ASN ARG SEQRES 4 A 561 SER LEU ALA MET GLU LYS ILE LYS CYS PHE GLY PHE ASP SEQRES 5 A 561 MET ASP TYR THR LEU ALA VAL TYR LYS SER PRO GLU TYR SEQRES 6 A 561 GLU SER LEU GLY PHE GLU LEU THR VAL GLU ARG LEU VAL SEQRES 7 A 561 SER ILE GLY TYR PRO GLN GLU LEU LEU SER PHE ALA TYR SEQRES 8 A 561 ASP SER THR PHE PRO THR ARG GLY LEU VAL PHE ASP THR SEQRES 9 A 561 LEU TYR GLY ASN LEU LEU LYS VAL ASP ALA TYR GLY ASN SEQRES 10 A 561 LEU LEU VAL CYS ALA HIS GLY PHE ASN PHE ILE ARG GLY SEQRES 11 A 561 PRO GLU THR ARG GLU GLN TYR PRO ASN LYS PHE ILE GLN SEQRES 12 A 561 ARG ASP ASP THR GLU ARG PHE TYR ILE LEU ASN THR LEU SEQRES 13 A 561 PHE ASN LEU PRO GLU THR TYR LEU LEU ALA CYS LEU VAL SEQRES 14 A 561 ASP PHE PHE THR ASN CYS PRO ARG TYR THR SER CYS GLU SEQRES 15 A 561 THR GLY PHE LYS ASP GLY ASP LEU PHE MET SER TYR ARG SEQRES 16 A 561 SER MET PHE GLN ASP VAL ARG ASP ALA VAL ASP TRP VAL SEQRES 17 A 561 HIS TYR LYS GLY SER LEU LYS GLU LYS THR VAL GLU ASN SEQRES 18 A 561 LEU GLU LYS TYR VAL VAL LYS ASP GLY LYS LEU PRO LEU SEQRES 19 A 561 LEU LEU SER ARG MET LYS GLU VAL GLY LYS VAL PHE LEU SEQRES 20 A 561 ALA THR ASN SER ASP TYR LYS TYR THR ASP LYS ILE MET SEQRES 21 A 561 THR TYR LEU PHE ASP PHE PRO HIS GLY PRO LYS PRO GLY SEQRES 22 A 561 SER SER HIS ARG PRO TRP GLN SER TYR PHE ASP LEU ILE SEQRES 23 A 561 LEU VAL ASP ALA ARG LYS PRO LEU PHE PHE GLY GLU GLY SEQRES 24 A 561 THR VAL LEU ARG GLN VAL ASP THR LYS THR GLY LYS LEU SEQRES 25 A 561 LYS ILE GLY THR TYR THR GLY PRO LEU GLN HIS GLY ILE SEQRES 26 A 561 VAL TYR SER GLY GLY SER SER ASP THR ILE CYS ASP LEU SEQRES 27 A 561 LEU GLY ALA LYS GLY LYS ASP ILE LEU TYR ILE GLY ASP SEQRES 28 A 561 HIS ILE PHE GLY ASP ILE LEU LYS SER LYS LYS ARG GLN SEQRES 29 A 561 GLY TRP ARG THR PHE LEU VAL ILE PRO GLU LEU ALA GLN SEQRES 30 A 561 GLU LEU HIS VAL TRP THR ASP LYS SER SER LEU PHE GLU SEQRES 31 A 561 GLU LEU GLN SER LEU ASP ILE PHE LEU ALA GLU LEU TYR SEQRES 32 A 561 LYS HIS LEU ASP SER SER SER ASN GLU ARG PRO ASP ILE SEQRES 33 A 561 SER SER ILE GLN ARG ARG ILE LYS LYS VAL THR HIS ASP SEQRES 34 A 561 MET ASP MET CYS TYR GLY MET MET GLY SER LEU PHE ARG SEQRES 35 A 561 SER GLY SER ARG GLN THR LEU PHE ALA SER GLN VAL MET SEQRES 36 A 561 ARG TYR ALA ASP LEU TYR ALA ALA SER PHE ILE ASN LEU SEQRES 37 A 561 LEU TYR TYR PRO PHE SER TYR LEU PHE ARG ALA ALA HIS SEQRES 38 A 561 VAL LEU MET PRO HIS GLU SER THR VAL GLU HIS THR HIS SEQRES 39 A 561 VAL ASP ILE ASN GLU MET GLU SER PRO LEU ALA THR ARG SEQRES 40 A 561 ASN ARG THR SER VAL ASP PHE LYS ASP THR ASP TYR LYS SEQRES 41 A 561 ARG HIS GLN LEU THR ARG SER ILE SER GLU ILE LYS PRO SEQRES 42 A 561 PRO ASN LEU PHE PRO LEU ALA PRO GLN GLU ILE THR HIS SEQRES 43 A 561 CYS HIS ASP GLU ASP ASP ASP GLU GLU GLU GLU GLU GLU SEQRES 44 A 561 GLU GLU HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET MG A 606 1 HET MG A 607 1 HET GOL A 608 6 HET GOL A 609 6 HET GOL A 610 6 HET GOL A 611 6 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 MG 2(MG 2+) FORMUL 9 GOL 4(C3 H8 O3) FORMUL 13 HOH *223(H2 O) HELIX 1 AA1 SER A 4 ASP A 14 1 11 HELIX 2 AA2 ASP A 20 ARG A 28 1 9 HELIX 3 AA3 ARG A 29 ARG A 34 5 6 HELIX 4 AA4 GLU A 44 ILE A 46 5 3 HELIX 5 AA5 PRO A 63 GLY A 81 1 19 HELIX 6 AA6 PRO A 83 PHE A 89 5 7 HELIX 7 AA7 ARG A 129 GLU A 135 1 7 HELIX 8 AA8 THR A 155 PHE A 157 5 3 HELIX 9 AA9 ASN A 158 CYS A 175 1 18 HELIX 10 AB1 TYR A 194 LYS A 211 1 18 HELIX 11 AB2 SER A 213 GLU A 220 1 8 HELIX 12 AB3 ASN A 221 VAL A 226 1 6 HELIX 13 AB4 LYS A 231 GLY A 243 1 13 HELIX 14 AB5 ASP A 252 PHE A 264 1 13 HELIX 15 AB6 PRO A 278 PHE A 283 5 6 HELIX 16 AB7 PRO A 293 GLY A 297 5 5 HELIX 17 AB8 SER A 331 GLY A 340 1 10 HELIX 18 AB9 LYS A 342 LYS A 344 5 3 HELIX 19 AC1 ILE A 357 GLY A 365 1 9 HELIX 20 AC2 GLU A 374 LYS A 385 1 12 HELIX 21 AC3 LYS A 385 LYS A 404 1 20 HELIX 22 AC4 ASP A 415 CYS A 433 1 19 HELIX 23 AC5 THR A 448 ALA A 458 1 11 HELIX 24 AC6 SER A 464 TYR A 471 5 8 HELIX 25 AC7 MET A 484 THR A 489 1 6 SHEET 1 AA110 PHE A 36 VAL A 37 0 SHEET 2 AA110 LEU A 460 ALA A 462 -1 O TYR A 461 N PHE A 36 SHEET 3 AA110 ARG A 367 VAL A 371 1 N LEU A 370 O LEU A 460 SHEET 4 AA110 ILE A 346 GLY A 350 1 N GLY A 350 O VAL A 371 SHEET 5 AA110 CYS A 48 PHE A 51 1 N GLY A 50 O LEU A 347 SHEET 6 AA110 LYS A 244 ALA A 248 1 O LYS A 244 N PHE A 49 SHEET 7 AA110 LEU A 285 VAL A 288 1 O LEU A 287 N LEU A 247 SHEET 8 AA110 TYR A 327 GLY A 329 1 O TYR A 327 N VAL A 288 SHEET 9 AA110 LEU A 302 ASP A 306 -1 N ARG A 303 O SER A 328 SHEET 10 AA110 LYS A 311 LEU A 312 -1 O LYS A 311 N ASP A 306 SHEET 1 AA2 2 LEU A 41 ALA A 42 0 SHEET 2 AA2 2 LEU A 476 PHE A 477 -1 O PHE A 477 N LEU A 41 SHEET 1 AA3 5 ASN A 126 ILE A 128 0 SHEET 2 AA3 5 LEU A 118 HIS A 123 -1 N HIS A 123 O ASN A 126 SHEET 3 AA3 5 ASN A 108 VAL A 112 -1 N LYS A 111 O LEU A 119 SHEET 4 AA3 5 LEU A 100 ASP A 103 -1 N VAL A 101 O LEU A 110 SHEET 5 AA3 5 PHE A 150 LEU A 153 -1 O LEU A 153 N LEU A 100 SHEET 1 AA4 3 THR A 179 SER A 180 0 SHEET 2 AA4 3 GLY A 184 ASP A 187 -1 O LYS A 186 N THR A 179 SHEET 3 AA4 3 LEU A 190 SER A 193 -1 O MET A 192 N PHE A 185 SHEET 1 AA5 2 ARG A 442 SER A 443 0 SHEET 2 AA5 2 ARG A 446 GLN A 447 -1 O ARG A 446 N SER A 443 LINK OD2 ASP A 52 MG MG A 606 1555 1555 1.96 LINK O ASP A 54 MG MG A 606 1555 1555 2.15 LINK OD1 ASP A 351 MG MG A 606 1555 1555 1.99 LINK MG MG A 606 O HOH A 725 1555 1555 2.33 LINK MG MG A 606 O HOH A 752 1555 1555 2.13 LINK MG MG A 606 O HOH A 769 1555 1555 1.91 LINK MG MG A 607 O HOH A 733 1555 3556 2.02 LINK MG MG A 607 O HOH A 876 1555 1555 2.34 CISPEP 1 SER A 62 PRO A 63 0 8.70 CISPEP 2 LYS A 292 PRO A 293 0 5.16 SITE 1 AC1 4 LYS A 25 ARG A 28 LYS A 404 TYR A 475 SITE 1 AC2 4 GLY A 130 PRO A 131 ARG A 134 LYS A 140 SITE 1 AC3 6 ASN A 250 HOH A 725 HOH A 752 HOH A 759 SITE 2 AC3 6 HOH A 780 HOH A 828 SITE 1 AC4 4 ARG A 144 GLN A 453 ARG A 456 TYR A 457 SITE 1 AC5 3 ARG A 129 GLY A 130 LYS A 424 SITE 1 AC6 6 ASP A 52 ASP A 54 ASP A 351 HOH A 725 SITE 2 AC6 6 HOH A 752 HOH A 769 SITE 1 AC7 4 LYS A 344 ARG A 446 HOH A 733 HOH A 876 SITE 1 AC8 7 GLN A 280 PHE A 283 ASP A 284 ILE A 286 SITE 2 AC8 7 GLN A 322 GLY A 324 ILE A 325 SITE 1 AC9 4 PRO A 96 GLU A 378 TYR A 434 HOH A 720 SITE 1 AD1 4 ASP A 7 GLU A 64 HOH A 711 HOH A 757 SITE 1 AD2 7 ASP A 252 TYR A 253 VAL A 288 ASP A 289 SITE 2 AD2 7 VAL A 305 GLY A 310 LEU A 312 CRYST1 90.900 128.200 129.400 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007728 0.00000