HEADER IMMUNE SYSTEM 10-MAR-18 6FY3 TITLE CRYSTAL STRUCTURE OF A V2-DIRECTED, RV144 VACCINE-LIKE ANTIBODY FROM TITLE 2 HIV-1 INFECTION, CAP228-3D, BOUND TO A HETEROLOGOUS V2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAP228-3D HEAVY CHAIN; COMPND 3 CHAIN: X, H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAP228-3D LIGHT CHAIN; COMPND 7 CHAIN: Y, L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CAP45 V2 PEPTIDE; COMPND 11 CHAIN: Z, P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 CELL: MEMORY B CELL; SOURCE 5 GENE: IGHV5-51; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: FREESTYLE 293-F; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 CELL: MEMORY B CELL; SOURCE 13 GENE: IGLV6-57; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: FREESTYLE 293-F; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 19 ORGANISM_TAXID: 11676; SOURCE 20 STRAIN: CAP45; SOURCE 21 VARIANT: 2.00.G3; SOURCE 22 GENE: ENV; SOURCE 23 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS FAB, HIV-1 ENVELOPE V1V2, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.K.WIBMER,P.L.MOORE,L.MORRIS REVDAT 3 17-JAN-24 6FY3 1 REMARK REVDAT 2 07-NOV-18 6FY3 1 JRNL REVDAT 1 05-SEP-18 6FY3 0 JRNL AUTH C.K.WIBMER,S.I.RICHARDSON,J.YOLITZ,C.CICALA,J.ARTHOS, JRNL AUTH 2 P.L.MOORE,L.MORRIS JRNL TITL COMMON HELICAL V1V2 CONFORMATIONS OF HIV-1 ENVELOPE EXPOSE JRNL TITL 2 THE ALPHA 4 BETA 7 BINDING SITE ON INTACT VIRIONS. JRNL REF NAT COMMUN V. 9 4489 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30367034 JRNL DOI 10.1038/S41467-018-06794-X REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13.2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 33796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8726 - 5.9454 1.00 2825 152 0.2563 0.2917 REMARK 3 2 5.9454 - 4.7210 1.00 2740 149 0.2048 0.2032 REMARK 3 3 4.7210 - 4.1247 1.00 2707 142 0.1730 0.1915 REMARK 3 4 4.1247 - 3.7479 1.00 2702 139 0.1936 0.2581 REMARK 3 5 3.7479 - 3.4794 1.00 2699 140 0.2051 0.2255 REMARK 3 6 3.4794 - 3.2743 1.00 2670 145 0.2200 0.2485 REMARK 3 7 3.2743 - 3.1104 1.00 2647 142 0.2214 0.2711 REMARK 3 8 3.1104 - 2.9750 1.00 2668 132 0.2269 0.2664 REMARK 3 9 2.9750 - 2.8605 1.00 2668 146 0.2480 0.2775 REMARK 3 10 2.8605 - 2.7618 1.00 2668 143 0.2573 0.3305 REMARK 3 11 2.7618 - 2.6755 1.00 2653 148 0.2615 0.2971 REMARK 3 12 2.6755 - 2.5990 0.93 2452 119 0.2806 0.2781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6702 REMARK 3 ANGLE : 0.596 9122 REMARK 3 CHIRALITY : 0.044 1003 REMARK 3 PLANARITY : 0.003 1150 REMARK 3 DIHEDRAL : 11.317 3993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -34.9625 -1.2140 15.8981 REMARK 3 T TENSOR REMARK 3 T11: 0.3198 T22: -0.0006 REMARK 3 T33: 0.0969 T12: -0.0474 REMARK 3 T13: -0.0559 T23: 0.1277 REMARK 3 L TENSOR REMARK 3 L11: 2.1356 L22: 0.5730 REMARK 3 L33: 2.5414 L12: 0.3437 REMARK 3 L13: -1.0011 L23: 0.1404 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.3938 S13: -0.1035 REMARK 3 S21: 0.0717 S22: -0.0535 S23: -0.1752 REMARK 3 S31: -0.3128 S32: 0.6789 S33: -0.0195 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33817 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4HQQ REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M IMIDAZOLE HCL (PH6.5), 0.05M REMARK 280 HEPES NAOH (PH7.5), 20% PEG8000, 5% 2-METHYL-2,4-PENTANEDIOL REMARK 280 (MPD), 0.1 M AMMONIUM SULPHATE, 5% ISOPROPANOL, SUPPLEMENTED UP REMARK 280 TO 25% MPD AS A CRYOPROTECTANT, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 104.18000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.90400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 104.18000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.90400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL X 121 REMARK 465 PHE X 122 REMARK 465 PRO X 123 REMARK 465 LEU X 124 REMARK 465 ALA X 125 REMARK 465 PRO X 126 REMARK 465 SER X 127 REMARK 465 SER X 128 REMARK 465 LYS X 129 REMARK 465 SER X 130 REMARK 465 THR X 131 REMARK 465 SER X 132 REMARK 465 GLY X 133 REMARK 465 GLY X 134 REMARK 465 THR X 135 REMARK 465 ALA X 136 REMARK 465 ALA X 137 REMARK 465 LEU X 138 REMARK 465 VAL X 150 REMARK 465 THR X 151 REMARK 465 VAL X 152 REMARK 465 SER X 153 REMARK 465 TRP X 154 REMARK 465 ASN X 155 REMARK 465 SER X 156 REMARK 465 GLY X 157 REMARK 465 ALA X 158 REMARK 465 LEU X 159 REMARK 465 THR X 160 REMARK 465 SER X 161 REMARK 465 GLY X 162 REMARK 465 VAL X 163 REMARK 465 HIS X 164 REMARK 465 THR X 165 REMARK 465 VAL X 182 REMARK 465 THR X 183 REMARK 465 VAL X 184 REMARK 465 PRO X 185 REMARK 465 SER X 186 REMARK 465 SER X 187 REMARK 465 SER X 188 REMARK 465 LEU X 189 REMARK 465 GLY X 190 REMARK 465 THR X 191 REMARK 465 GLN X 192 REMARK 465 THR X 193 REMARK 465 TYR X 194 REMARK 465 ILE X 195 REMARK 465 LYS X 214 REMARK 465 SER X 215 REMARK 465 CYS X 216 REMARK 465 ASP X 217 REMARK 465 LYS X 218 REMARK 465 GLY X 219 REMARK 465 LEU X 220 REMARK 465 GLU X 221 REMARK 465 VAL X 222 REMARK 465 LEU X 223 REMARK 465 PHE X 224 REMARK 465 GLN X 225 REMARK 465 PRO Y 120 REMARK 465 SER Y 121 REMARK 465 SER Y 122 REMARK 465 GLU Y 123 REMARK 465 GLU Y 124 REMARK 465 LEU Y 125 REMARK 465 GLN Y 126 REMARK 465 ALA Y 127 REMARK 465 ASN Y 128 REMARK 465 LYS Y 129 REMARK 465 ALA Y 207 REMARK 465 PRO Y 208 REMARK 465 THR Y 209 REMARK 465 GLU Y 210 REMARK 465 CYS Y 211 REMARK 465 SER Y 212 REMARK 465 GLU Z 164 REMARK 465 VAL Z 181 REMARK 465 VAL Z 182 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 GLY H 219 REMARK 465 LEU H 220 REMARK 465 GLU H 221 REMARK 465 VAL H 222 REMARK 465 LEU H 223 REMARK 465 PHE H 224 REMARK 465 GLN H 225 REMARK 465 THR L 209 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 GLU P 164 REMARK 465 LEU P 165 REMARK 465 VAL P 181 REMARK 465 VAL P 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG Y 54 O PHE Y 62 1.53 REMARK 500 H GLN Y 167 O LYS Y 171 1.56 REMARK 500 H GLN L 167 O LYS L 171 1.57 REMARK 500 HH12 ARG Y 61 OD2 ASP Y 82 1.57 REMARK 500 O HOH H 334 O HOH H 348 1.94 REMARK 500 O HOH L 327 O HOH L 328 1.95 REMARK 500 O HOH H 339 O HOH H 352 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X 144 76.96 57.40 REMARK 500 ASP Y 51 -52.62 74.61 REMARK 500 ALA Y 84 172.78 178.23 REMARK 500 ASP Y 151 -104.21 59.27 REMARK 500 SER H 128 98.36 -64.59 REMARK 500 ASP L 51 -52.47 75.76 REMARK 500 ALA L 84 172.67 179.07 REMARK 500 ASN L 128 50.76 73.04 REMARK 500 ASP L 138 60.16 60.12 REMARK 500 ASP L 151 -104.17 60.95 REMARK 500 REMARK 500 REMARK: NULL DBREF 6FY3 X 1 225 PDB 6FY3 6FY3 1 225 DBREF 6FY3 Y 1 212 PDB 6FY3 6FY3 1 212 DBREF 6FY3 Z 164 182 PDB 6FY3 6FY3 164 182 DBREF 6FY3 H 1 225 PDB 6FY3 6FY3 1 225 DBREF 6FY3 L 1 212 PDB 6FY3 6FY3 1 212 DBREF 6FY3 P 164 182 PDB 6FY3 6FY3 164 182 SEQRES 1 X 238 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 X 238 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY PHE GLY SEQRES 3 X 238 TYR SER PHE SER THR TYR TRP ILE ALA TRP VAL ARG GLN SEQRES 4 X 238 MET PRO GLY LYS GLY LEU GLU TRP MET GLY MET ILE TYR SEQRES 5 X 238 PRO GLY ASP SER ASP THR LYS TYR SER PRO SER LEU GLN SEQRES 6 X 238 GLY GLN VAL THR ILE SER GLY ASP LYS SER ILE SER THR SEQRES 7 X 238 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 X 238 ALA MET TYR TYR CYS ALA ARG LEU LEU ASN ASN TYR ASP SEQRES 9 X 238 SER SER GLY PHE LEU TYR TRP TYR LEU ASP LEU TRP GLY SEQRES 10 X 238 ARG GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 X 238 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 X 238 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 X 238 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 X 238 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 X 238 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 X 238 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 X 238 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 X 238 LYS LYS VAL GLU PRO LYS SER CYS ASP LYS GLY LEU GLU SEQRES 19 X 238 VAL LEU PHE GLN SEQRES 1 Y 218 ASN PHE MET LEU THR GLN PRO HIS SER VAL SER GLU SER SEQRES 2 Y 218 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 Y 218 GLY SER ILE ALA SER ASP TYR VAL GLN TRP TYR GLN GLN SEQRES 4 Y 218 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 Y 218 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 Y 218 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 Y 218 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 Y 218 GLN SER TYR ASP MET THR ASN HIS ASN TRP VAL PHE GLY SEQRES 9 Y 218 GLY GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA SEQRES 10 Y 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 Y 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 Y 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 Y 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 Y 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 Y 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SEQRES 16 Y 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 Y 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 Z 19 GLU LEU ARG ASP LYS LYS GLN LYS ALA TYR ALA LEU PHE SEQRES 2 Z 19 TYR ARG PRO ASP VAL VAL SEQRES 1 H 238 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 238 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY PHE GLY SEQRES 3 H 238 TYR SER PHE SER THR TYR TRP ILE ALA TRP VAL ARG GLN SEQRES 4 H 238 MET PRO GLY LYS GLY LEU GLU TRP MET GLY MET ILE TYR SEQRES 5 H 238 PRO GLY ASP SER ASP THR LYS TYR SER PRO SER LEU GLN SEQRES 6 H 238 GLY GLN VAL THR ILE SER GLY ASP LYS SER ILE SER THR SEQRES 7 H 238 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 238 ALA MET TYR TYR CYS ALA ARG LEU LEU ASN ASN TYR ASP SEQRES 9 H 238 SER SER GLY PHE LEU TYR TRP TYR LEU ASP LEU TRP GLY SEQRES 10 H 238 ARG GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 238 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 238 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 238 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 238 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 238 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 238 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 238 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 238 LYS LYS VAL GLU PRO LYS SER CYS ASP LYS GLY LEU GLU SEQRES 19 H 238 VAL LEU PHE GLN SEQRES 1 L 218 ASN PHE MET LEU THR GLN PRO HIS SER VAL SER GLU SER SEQRES 2 L 218 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 L 218 GLY SER ILE ALA SER ASP TYR VAL GLN TRP TYR GLN GLN SEQRES 4 L 218 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 L 218 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 218 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 L 218 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 L 218 GLN SER TYR ASP MET THR ASN HIS ASN TRP VAL PHE GLY SEQRES 9 L 218 GLY GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA SEQRES 10 L 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 L 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 L 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 L 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 L 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 L 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SEQRES 16 L 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 L 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 P 19 GLU LEU ARG ASP LYS LYS GLN LYS ALA TYR ALA LEU PHE SEQRES 2 P 19 TYR ARG PRO ASP VAL VAL FORMUL 7 HOH *168(H2 O) HELIX 1 AA1 SER X 28 TYR X 32 5 5 HELIX 2 AA2 LYS X 83 THR X 87 5 5 HELIX 3 AA3 SER Y 29 ASP Y 31 5 5 HELIX 4 AA4 LYS Y 79 GLU Y 83 5 5 HELIX 5 AA5 THR Y 181 HIS Y 188 1 8 HELIX 6 AA6 ASP Z 167 TYR Z 177 1 11 HELIX 7 AA7 SER H 28 TYR H 32 5 5 HELIX 8 AA8 PRO H 61 GLN H 64 5 4 HELIX 9 AA9 LYS H 73 ILE H 75 5 3 HELIX 10 AB1 LYS H 83 THR H 87 5 5 HELIX 11 AB2 SER H 187 LEU H 189 5 3 HELIX 12 AB3 LYS H 201 ASN H 204 5 4 HELIX 13 AB4 SER L 29 ASP L 31 5 5 HELIX 14 AB5 LYS L 79 GLU L 83 5 5 HELIX 15 AB6 SER L 121 ALA L 127 1 7 HELIX 16 AB7 THR L 181 HIS L 188 1 8 HELIX 17 AB8 ASP P 167 TYR P 177 1 11 SHEET 1 AA1 4 GLN X 3 GLN X 6 0 SHEET 2 AA1 4 LEU X 18 PHE X 25 -1 O PHE X 25 N GLN X 3 SHEET 3 AA1 4 THR X 77 TRP X 82 -1 O TRP X 82 N LEU X 18 SHEET 4 AA1 4 VAL X 67 ASP X 72 -1 N ASP X 72 O THR X 77 SHEET 1 AA2 6 GLU X 10 LYS X 12 0 SHEET 2 AA2 6 THR X 107 VAL X 111 1 O LEU X 108 N GLU X 10 SHEET 3 AA2 6 ALA X 88 TYR X 99 -1 N ALA X 88 O VAL X 109 SHEET 4 AA2 6 TRP X 33 GLN X 39 -1 N GLN X 39 O MET X 89 SHEET 5 AA2 6 LEU X 45 TYR X 52 -1 O GLU X 46 N ARG X 38 SHEET 6 AA2 6 ASP X 56 TYR X 59 -1 O LYS X 58 N MET X 50 SHEET 1 AA3 4 GLU X 10 LYS X 12 0 SHEET 2 AA3 4 THR X 107 VAL X 111 1 O LEU X 108 N GLU X 10 SHEET 3 AA3 4 ALA X 88 TYR X 99 -1 N ALA X 88 O VAL X 109 SHEET 4 AA3 4 LEU X 100E TRP X 103 -1 O LEU X 102 N ARG X 94 SHEET 1 AA4 3 CYS X 140 TYR X 145 0 SHEET 2 AA4 3 TYR X 176 SER X 180 -1 O LEU X 178 N VAL X 142 SHEET 3 AA4 3 VAL X 169 LEU X 170 -1 N VAL X 169 O SER X 177 SHEET 1 AA5 2 ASN X 197 HIS X 200 0 SHEET 2 AA5 2 THR X 205 ASP X 208 -1 O VAL X 207 N VAL X 198 SHEET 1 AA6 4 LEU Y 4 THR Y 5 0 SHEET 2 AA6 4 VAL Y 19 ARG Y 25 -1 O THR Y 24 N THR Y 5 SHEET 3 AA6 4 SER Y 70 ILE Y 75 -1 O ILE Y 75 N VAL Y 19 SHEET 4 AA6 4 PHE Y 62 ASP Y 66A-1 N ASP Y 66A O SER Y 70 SHEET 1 AA7 5 SER Y 9 GLU Y 13 0 SHEET 2 AA7 5 THR Y 102 VAL Y 106 1 O THR Y 105 N VAL Y 11 SHEET 3 AA7 5 ALA Y 84 ASP Y 92 -1 N ALA Y 84 O LEU Y 104 SHEET 4 AA7 5 VAL Y 33 GLN Y 38 -1 N GLN Y 34 O GLN Y 89 SHEET 5 AA7 5 THR Y 45 ILE Y 48 -1 O THR Y 45 N GLN Y 37 SHEET 1 AA8 4 SER Y 9 GLU Y 13 0 SHEET 2 AA8 4 THR Y 102 VAL Y 106 1 O THR Y 105 N VAL Y 11 SHEET 3 AA8 4 ALA Y 84 ASP Y 92 -1 N ALA Y 84 O LEU Y 104 SHEET 4 AA8 4 ASN Y 95B PHE Y 98 -1 O ASN Y 95B N ASP Y 92 SHEET 1 AA9 4 SER Y 114 PHE Y 118 0 SHEET 2 AA9 4 THR Y 131 PHE Y 139 -1 O SER Y 137 N SER Y 114 SHEET 3 AA9 4 TYR Y 172 SER Y 179 -1 O ALA Y 174 N ILE Y 136 SHEET 4 AA9 4 VAL Y 159 THR Y 161 -1 N GLU Y 160 O TYR Y 177 SHEET 1 AB1 4 SER Y 114 PHE Y 118 0 SHEET 2 AB1 4 THR Y 131 PHE Y 139 -1 O SER Y 137 N SER Y 114 SHEET 3 AB1 4 TYR Y 172 SER Y 179 -1 O ALA Y 174 N ILE Y 136 SHEET 4 AB1 4 SER Y 165 LYS Y 166 -1 N SER Y 165 O ALA Y 173 SHEET 1 AB2 4 SER Y 153 VAL Y 155 0 SHEET 2 AB2 4 THR Y 145 ALA Y 150 -1 N ALA Y 150 O SER Y 153 SHEET 3 AB2 4 TYR Y 191 HIS Y 197 -1 O THR Y 196 N THR Y 145 SHEET 4 AB2 4 SER Y 200 VAL Y 206 -1 O VAL Y 202 N VAL Y 195 SHEET 1 AB3 4 GLN H 3 GLN H 6 0 SHEET 2 AB3 4 LEU H 18 PHE H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AB3 4 THR H 77 TRP H 82 -1 O TRP H 82 N LEU H 18 SHEET 4 AB3 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AB4 6 GLU H 10 LYS H 12 0 SHEET 2 AB4 6 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 AB4 6 ALA H 88 TYR H 99 -1 N ALA H 88 O VAL H 109 SHEET 4 AB4 6 TRP H 33 GLN H 39 -1 N GLN H 39 O MET H 89 SHEET 5 AB4 6 LEU H 45 TYR H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AB4 6 ASP H 56 TYR H 59 -1 O ASP H 56 N TYR H 52 SHEET 1 AB5 4 GLU H 10 LYS H 12 0 SHEET 2 AB5 4 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 AB5 4 ALA H 88 TYR H 99 -1 N ALA H 88 O VAL H 109 SHEET 4 AB5 4 LEU H 100E TRP H 103 -1 O TYR H 100H N LEU H 96 SHEET 1 AB6 4 SER H 120 SER H 130 0 SHEET 2 AB6 4 THR H 135 TYR H 145 -1 O ALA H 137 N SER H 127 SHEET 3 AB6 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AB6 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB7 4 SER H 120 SER H 130 0 SHEET 2 AB7 4 THR H 135 TYR H 145 -1 O ALA H 137 N SER H 127 SHEET 3 AB7 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AB7 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB8 3 THR H 151 TRP H 154 0 SHEET 2 AB8 3 TYR H 194 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AB8 3 THR H 205 VAL H 211 -1 O THR H 205 N HIS H 200 SHEET 1 AB9 4 LEU L 4 THR L 5 0 SHEET 2 AB9 4 VAL L 19 ARG L 25 -1 O THR L 24 N THR L 5 SHEET 3 AB9 4 SER L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AB9 4 PHE L 62 ASP L 66A-1 N ASP L 66A O SER L 70 SHEET 1 AC1 5 SER L 9 GLU L 13 0 SHEET 2 AC1 5 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AC1 5 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AC1 5 GLN L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AC1 5 THR L 45 ILE L 48 -1 O THR L 45 N GLN L 37 SHEET 1 AC2 4 SER L 9 GLU L 13 0 SHEET 2 AC2 4 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AC2 4 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AC2 4 ASN L 95B PHE L 98 -1 O ASN L 95B N ASP L 92 SHEET 1 AC3 4 SER L 114 PHE L 118 0 SHEET 2 AC3 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AC3 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AC3 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AC4 4 SER L 114 PHE L 118 0 SHEET 2 AC4 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AC4 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AC4 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AC5 4 SER L 153 VAL L 155 0 SHEET 2 AC5 4 THR L 145 ALA L 150 -1 N TRP L 148 O VAL L 155 SHEET 3 AC5 4 TYR L 191 HIS L 197 -1 O THR L 196 N THR L 145 SHEET 4 AC5 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS X 22 CYS X 92 1555 1555 2.04 SSBOND 2 CYS X 140 CYS X 196 1555 1555 2.03 SSBOND 3 CYS Y 23 CYS Y 88 1555 1555 2.04 SSBOND 4 CYS Y 134 CYS Y 193 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.02 SSBOND 6 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 8 CYS L 134 CYS L 193 1555 1555 2.03 CISPEP 1 PHE X 146 PRO X 147 0 0.41 CISPEP 2 GLU X 148 PRO X 149 0 -0.55 CISPEP 3 TYR Y 140 PRO Y 141 0 -2.54 CISPEP 4 PHE H 146 PRO H 147 0 -6.72 CISPEP 5 GLU H 148 PRO H 149 0 -4.68 CISPEP 6 TYR L 140 PRO L 141 0 -1.81 CRYST1 208.360 43.808 119.910 90.00 93.77 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004799 0.000000 0.000316 0.00000 SCALE2 0.000000 0.022827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008358 0.00000