HEADER OXIDOREDUCTASE 14-MAR-18 6FZH TITLE CRYSTAL STRUCTURE OF A STREPTOCOCCAL DEHYDROGENASE AT 1.5 ANGSTROEM TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAPDH,NAD-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE COMPND 5 DEHYDROGENASE; COMPND 6 EC: 1.2.1.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES MGAS8232; SOURCE 3 ORGANISM_TAXID: 186103; SOURCE 4 GENE: GAP, GAPA, PLR, SPYM18_0261; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS STREPTOCOCCUS PYOGENES, GAPDH, NAD, DEHYDROGENASE, OXIDOREDUCTASE, KEYWDS 2 ANACARDIC ACID, CURCUMIN, COMPLEMENT, C5A, C3A, C3 EXPDTA X-RAY DIFFRACTION AUTHOR S.GOMEZ,J.QUEROL-GARCIA,G.SANCHEZ-BARRON,M.SUBIAS,A.GONZALEZ-ALSINA, AUTHOR 2 C.MELCHOR-TAFUR,V.FRANCO-HIDALGO,S.ALBERTI,S.RODRIGUEZ DE CORDOBA, AUTHOR 3 F.J.FERNANDEZ,M.C.VEGA REVDAT 3 17-JAN-24 6FZH 1 REMARK REVDAT 2 24-APR-19 6FZH 1 JRNL REVDAT 1 27-MAR-19 6FZH 0 JRNL AUTH S.GOMEZ,J.QUEROL-GARCIA,G.SANCHEZ-BARRON,M.SUBIAS, JRNL AUTH 2 A.GONZALEZ-ALSINA,V.FRANCO-HIDALGO,S.ALBERTI, JRNL AUTH 3 S.RODRIGUEZ DE CORDOBA,F.J.FERNANDEZ,M.C.VEGA JRNL TITL THE ANTIMICROBIALS ANACARDIC ACID AND CURCUMIN ARE JRNL TITL 2 NOT-COMPETITIVE INHIBITORS OF GRAM-POSITIVE BACTERIAL JRNL TITL 3 PATHOGENIC GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE BY A JRNL TITL 4 MECHANISM UNRELATED TO HUMAN C5A ANAPHYLATOXIN BINDING. JRNL REF FRONT MICROBIOL V. 10 326 2019 JRNL REFN ESSN 1664-302X JRNL PMID 30863383 JRNL DOI 10.3389/FMICB.2019.00326 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.QUEROL-GARCIA,F.J.FERNANDEZ,A.V.MARIN,S.GOMEZ,D.FULLA, REMARK 1 AUTH 2 C.MELCHOR-TAFUR,V.FRANCO-HIDALGO,S.ALBERTI,J.JUANHUIX, REMARK 1 AUTH 3 S.RODRIGUEZ DE CORDOBA,J.R.REGUEIRO,M.C.VEGA REMARK 1 TITL CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE REMARK 1 TITL 2 DEHYDROGENASE FROM THE GRAM-POSITIVE BACTERIAL PATHOGEN REMARK 1 REF FRONT MICROBIOL V. 8 541 2017 REMARK 1 REFN ESSN 1664-302X REMARK 1 PMID 28443070 REMARK 1 DOI 10.3389/FMICB.2017.00541 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 122305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.480 REMARK 3 FREE R VALUE TEST SET COUNT : 5676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1537 - 4.6591 1.00 7769 207 0.1388 0.1491 REMARK 3 2 4.6591 - 3.6987 1.00 7752 202 0.1144 0.1156 REMARK 3 3 3.6987 - 3.2313 1.00 7775 208 0.1273 0.1419 REMARK 3 4 3.2313 - 2.9359 1.00 7745 177 0.1322 0.1559 REMARK 3 5 2.9359 - 2.7255 1.00 7792 184 0.1312 0.1309 REMARK 3 6 2.7255 - 2.5648 1.00 7810 193 0.1315 0.1270 REMARK 3 7 2.5648 - 2.4364 1.00 7820 159 0.1327 0.1566 REMARK 3 8 2.4364 - 2.3304 1.00 7742 175 0.1327 0.1546 REMARK 3 9 2.3304 - 2.2406 1.00 7742 228 0.1294 0.1482 REMARK 3 10 2.2406 - 2.1633 1.00 7780 207 0.1283 0.1766 REMARK 3 11 2.1633 - 2.0957 1.00 7746 219 0.1311 0.1507 REMARK 3 12 2.0957 - 2.0358 1.00 7744 183 0.1349 0.1403 REMARK 3 13 2.0358 - 1.9822 1.00 7801 209 0.1406 0.1615 REMARK 3 14 1.9822 - 1.9338 1.00 7776 213 0.1382 0.1481 REMARK 3 15 1.9338 - 1.8899 1.00 7740 187 0.1511 0.1848 REMARK 3 16 1.8899 - 1.8496 1.00 7827 182 0.1654 0.1540 REMARK 3 17 1.8496 - 1.8126 1.00 7734 201 0.1697 0.1934 REMARK 3 18 1.8126 - 1.7784 1.00 7806 192 0.1669 0.1949 REMARK 3 19 1.7784 - 1.7467 1.00 7780 195 0.1689 0.1834 REMARK 3 20 1.7467 - 1.7171 1.00 7774 205 0.1768 0.2127 REMARK 3 21 1.7171 - 1.6894 1.00 7747 203 0.1868 0.1909 REMARK 3 22 1.6894 - 1.6634 1.00 7749 191 0.1910 0.1903 REMARK 3 23 1.6634 - 1.6389 0.99 7778 192 0.1932 0.2062 REMARK 3 24 1.6389 - 1.6158 0.94 7280 168 0.2159 0.2483 REMARK 3 25 1.6158 - 1.5940 0.89 6903 212 0.2355 0.2107 REMARK 3 26 1.5940 - 1.5733 0.86 6802 183 0.2493 0.2783 REMARK 3 27 1.5733 - 1.5536 0.82 6356 171 0.2521 0.2344 REMARK 3 28 1.5536 - 1.5349 0.78 6041 165 0.2619 0.3279 REMARK 3 29 1.5349 - 1.5171 0.74 5831 133 0.2841 0.3098 REMARK 3 30 1.5171 - 1.5000 0.70 5465 132 0.3049 0.3192 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5533 REMARK 3 ANGLE : 1.032 7560 REMARK 3 CHIRALITY : 0.064 875 REMARK 3 PLANARITY : 0.006 988 REMARK 3 DIHEDRAL : 7.921 4932 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6716 17.4653 101.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.1088 REMARK 3 T33: 0.1023 T12: -0.0145 REMARK 3 T13: -0.0267 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.4639 L22: 0.6340 REMARK 3 L33: 0.6639 L12: -0.0530 REMARK 3 L13: 0.1719 L23: 0.0609 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: -0.0655 S13: 0.0123 REMARK 3 S21: 0.1081 S22: 0.0032 S23: -0.0780 REMARK 3 S31: -0.0377 S32: 0.0524 S33: -0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4407 22.6837 84.3762 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.0963 REMARK 3 T33: 0.0956 T12: 0.0086 REMARK 3 T13: -0.0029 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.1120 L22: 0.3327 REMARK 3 L33: 0.1267 L12: -0.0469 REMARK 3 L13: 0.0594 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0053 S13: 0.0361 REMARK 3 S21: 0.0496 S22: -0.0036 S23: -0.0027 REMARK 3 S31: -0.0477 S32: 0.0003 S33: 0.0104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5736 -8.1919 56.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.1004 REMARK 3 T33: 0.1176 T12: -0.0103 REMARK 3 T13: -0.0068 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.6492 L22: 0.4485 REMARK 3 L33: 0.7139 L12: -0.1293 REMARK 3 L13: 0.0105 L23: 0.1961 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.0666 S13: -0.0764 REMARK 3 S21: -0.0502 S22: -0.0292 S23: 0.0419 REMARK 3 S31: 0.0524 S32: -0.0558 S33: -0.0021 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4977 9.9185 72.6178 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.1003 REMARK 3 T33: 0.0992 T12: 0.0126 REMARK 3 T13: 0.0043 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.2256 L22: 0.1650 REMARK 3 L33: 0.1172 L12: -0.0256 REMARK 3 L13: 0.0582 L23: -0.0036 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: 0.0136 S13: 0.0012 REMARK 3 S21: 0.0129 S22: -0.0084 S23: 0.0481 REMARK 3 S31: -0.0209 S32: -0.0347 S33: 0.0074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : HORIZONTALLY DIFFRACTING REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : FOCUSING MIRRORS IN KIRKPATRICK REMARK 200 -BAEZ GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MARCH 15, 2012 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05980 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LVF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM NITRATE, 22% W/V PEG REMARK 280 3350, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.63300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.80150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.63300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.80150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.26600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NZ LYS B 336 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 189 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 -145.83 -149.85 REMARK 500 ALA A 101 54.37 -90.83 REMARK 500 THR A 121 45.44 -86.41 REMARK 500 ASN A 136 28.71 -148.09 REMARK 500 ALA A 150 -166.95 66.04 REMARK 500 ASN A 268 -163.36 -161.53 REMARK 500 GLU A 317 -76.71 -80.22 REMARK 500 ASP B 34 -145.41 -149.18 REMARK 500 ALA B 101 53.42 -90.78 REMARK 500 THR B 121 45.39 -86.94 REMARK 500 ASN B 136 28.33 -148.35 REMARK 500 ALA B 150 -166.83 66.38 REMARK 500 ASN B 268 -162.64 -161.33 REMARK 500 GLU B 317 -76.35 -79.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 950 DISTANCE = 6.71 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 DBREF 6FZH A 1 336 UNP P68777 G3P_STRP8 1 336 DBREF 6FZH B 1 336 UNP P68777 G3P_STRP8 1 336 SEQRES 1 A 336 MET VAL VAL LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE SEQRES 2 A 336 GLY ARG LEU ALA PHE ARG ARG ILE GLN ASN ILE GLU GLY SEQRES 3 A 336 VAL GLU VAL THR ARG ILE ASN ASP LEU THR ASP PRO ASN SEQRES 4 A 336 MET LEU ALA HIS LEU LEU LYS TYR ASP THR THR GLN GLY SEQRES 5 A 336 ARG PHE ASP GLY THR VAL GLU VAL LYS GLU GLY GLY PHE SEQRES 6 A 336 GLU VAL ASN GLY ASN PHE ILE LYS VAL SER ALA GLU ARG SEQRES 7 A 336 ASP PRO GLU ASN ILE ASP TRP ALA THR ASP GLY VAL GLU SEQRES 8 A 336 ILE VAL LEU GLU ALA THR GLY PHE PHE ALA LYS LYS GLU SEQRES 9 A 336 ALA ALA GLU LYS HIS LEU HIS ALA ASN GLY ALA LYS LYS SEQRES 10 A 336 VAL VAL ILE THR ALA PRO GLY GLY ASN ASP VAL LYS THR SEQRES 11 A 336 VAL VAL PHE ASN THR ASN HIS ASP ILE LEU ASP GLY THR SEQRES 12 A 336 GLU THR VAL ILE SER GLY ALA SER CYS THR THR ASN CYS SEQRES 13 A 336 LEU ALA PRO MET ALA LYS ALA LEU HIS ASP ALA PHE GLY SEQRES 14 A 336 ILE GLN LYS GLY LEU MET THR THR ILE HIS ALA TYR THR SEQRES 15 A 336 GLY ASP GLN MET ILE LEU ASP GLY PRO HIS ARG GLY GLY SEQRES 16 A 336 ASP LEU ARG ARG ALA ARG ALA GLY ALA ALA ASN ILE VAL SEQRES 17 A 336 PRO ASN SER THR GLY ALA ALA LYS ALA ILE GLY LEU VAL SEQRES 18 A 336 ILE PRO GLU LEU ASN GLY LYS LEU ASP GLY ALA ALA GLN SEQRES 19 A 336 ARG VAL PRO VAL PRO THR GLY SER VAL THR GLU LEU VAL SEQRES 20 A 336 VAL THR LEU ASP LYS ASN VAL SER VAL ASP GLU ILE ASN SEQRES 21 A 336 ALA ALA MET LYS ALA ALA SER ASN ASP SER PHE GLY TYR SEQRES 22 A 336 THR GLU ASP PRO ILE VAL SER SER ASP ILE VAL GLY VAL SEQRES 23 A 336 SER TYR GLY SER LEU PHE ASP ALA THR GLN THR LYS VAL SEQRES 24 A 336 MET GLU VAL ASP GLY SER GLN LEU VAL LYS VAL VAL SER SEQRES 25 A 336 TRP TYR ASP ASN GLU MET SER TYR THR ALA GLN LEU VAL SEQRES 26 A 336 ARG THR LEU GLU TYR PHE ALA LYS ILE ALA LYS SEQRES 1 B 336 MET VAL VAL LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE SEQRES 2 B 336 GLY ARG LEU ALA PHE ARG ARG ILE GLN ASN ILE GLU GLY SEQRES 3 B 336 VAL GLU VAL THR ARG ILE ASN ASP LEU THR ASP PRO ASN SEQRES 4 B 336 MET LEU ALA HIS LEU LEU LYS TYR ASP THR THR GLN GLY SEQRES 5 B 336 ARG PHE ASP GLY THR VAL GLU VAL LYS GLU GLY GLY PHE SEQRES 6 B 336 GLU VAL ASN GLY ASN PHE ILE LYS VAL SER ALA GLU ARG SEQRES 7 B 336 ASP PRO GLU ASN ILE ASP TRP ALA THR ASP GLY VAL GLU SEQRES 8 B 336 ILE VAL LEU GLU ALA THR GLY PHE PHE ALA LYS LYS GLU SEQRES 9 B 336 ALA ALA GLU LYS HIS LEU HIS ALA ASN GLY ALA LYS LYS SEQRES 10 B 336 VAL VAL ILE THR ALA PRO GLY GLY ASN ASP VAL LYS THR SEQRES 11 B 336 VAL VAL PHE ASN THR ASN HIS ASP ILE LEU ASP GLY THR SEQRES 12 B 336 GLU THR VAL ILE SER GLY ALA SER CYS THR THR ASN CYS SEQRES 13 B 336 LEU ALA PRO MET ALA LYS ALA LEU HIS ASP ALA PHE GLY SEQRES 14 B 336 ILE GLN LYS GLY LEU MET THR THR ILE HIS ALA TYR THR SEQRES 15 B 336 GLY ASP GLN MET ILE LEU ASP GLY PRO HIS ARG GLY GLY SEQRES 16 B 336 ASP LEU ARG ARG ALA ARG ALA GLY ALA ALA ASN ILE VAL SEQRES 17 B 336 PRO ASN SER THR GLY ALA ALA LYS ALA ILE GLY LEU VAL SEQRES 18 B 336 ILE PRO GLU LEU ASN GLY LYS LEU ASP GLY ALA ALA GLN SEQRES 19 B 336 ARG VAL PRO VAL PRO THR GLY SER VAL THR GLU LEU VAL SEQRES 20 B 336 VAL THR LEU ASP LYS ASN VAL SER VAL ASP GLU ILE ASN SEQRES 21 B 336 ALA ALA MET LYS ALA ALA SER ASN ASP SER PHE GLY TYR SEQRES 22 B 336 THR GLU ASP PRO ILE VAL SER SER ASP ILE VAL GLY VAL SEQRES 23 B 336 SER TYR GLY SER LEU PHE ASP ALA THR GLN THR LYS VAL SEQRES 24 B 336 MET GLU VAL ASP GLY SER GLN LEU VAL LYS VAL VAL SER SEQRES 25 B 336 TRP TYR ASP ASN GLU MET SER TYR THR ALA GLN LEU VAL SEQRES 26 B 336 ARG THR LEU GLU TYR PHE ALA LYS ILE ALA LYS HET NAD A 401 44 HET GOL A 402 6 HET NAD B 401 44 HET PEG B 402 7 HET GOL B 403 6 HET GOL B 404 6 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 6 PEG C4 H10 O3 FORMUL 9 HOH *913(H2 O) HELIX 1 AA1 GLY A 11 GLN A 22 1 12 HELIX 2 AA2 ASP A 37 TYR A 47 1 11 HELIX 3 AA3 ASP A 79 ILE A 83 5 5 HELIX 4 AA4 ASP A 84 GLY A 89 5 6 HELIX 5 AA5 LYS A 102 GLU A 107 1 6 HELIX 6 AA6 LYS A 108 LEU A 110 5 3 HELIX 7 AA7 ASN A 136 LEU A 140 5 5 HELIX 8 AA8 SER A 151 GLY A 169 1 19 HELIX 9 AA9 ALA A 215 VAL A 221 5 7 HELIX 10 AB1 ILE A 222 ASN A 226 5 5 HELIX 11 AB2 SER A 255 ALA A 266 1 12 HELIX 12 AB3 VAL A 279 VAL A 284 5 6 HELIX 13 AB4 THR A 295 THR A 297 5 3 HELIX 14 AB5 GLU A 317 ALA A 335 1 19 HELIX 15 AB6 GLY B 11 GLN B 22 1 12 HELIX 16 AB7 ASP B 37 TYR B 47 1 11 HELIX 17 AB8 ASP B 79 ILE B 83 5 5 HELIX 18 AB9 ASP B 84 GLY B 89 5 6 HELIX 19 AC1 LYS B 102 GLU B 107 1 6 HELIX 20 AC2 LYS B 108 HIS B 111 5 4 HELIX 21 AC3 ASN B 136 LEU B 140 5 5 HELIX 22 AC4 SER B 151 GLY B 169 1 19 HELIX 23 AC5 ALA B 217 VAL B 221 5 5 HELIX 24 AC6 ILE B 222 ASN B 226 5 5 HELIX 25 AC7 SER B 255 ALA B 266 1 12 HELIX 26 AC8 VAL B 279 VAL B 284 5 6 HELIX 27 AC9 THR B 295 THR B 297 5 3 HELIX 28 AD1 GLU B 317 ALA B 335 1 19 SHEET 1 AA1 9 VAL A 58 LYS A 61 0 SHEET 2 AA1 9 GLY A 64 VAL A 67 -1 O GLU A 66 N GLU A 59 SHEET 3 AA1 9 ASN A 70 SER A 75 -1 O ILE A 72 N PHE A 65 SHEET 4 AA1 9 VAL A 27 ASN A 33 1 N ILE A 32 O LYS A 73 SHEET 5 AA1 9 VAL A 3 ASN A 8 1 N VAL A 5 O GLU A 28 SHEET 6 AA1 9 ILE A 92 GLU A 95 1 O LEU A 94 N GLY A 6 SHEET 7 AA1 9 LYS A 117 ILE A 120 1 O VAL A 119 N VAL A 93 SHEET 8 AA1 9 VAL A 146 SER A 148 1 O ILE A 147 N ILE A 120 SHEET 9 AA1 9 LYS A 129 THR A 130 1 N LYS A 129 O SER A 148 SHEET 1 AA2 7 VAL A 208 SER A 211 0 SHEET 2 AA2 7 LEU A 229 VAL A 236 -1 O ARG A 235 N VAL A 208 SHEET 3 AA2 7 ILE A 170 ALA A 180 1 N HIS A 179 O VAL A 236 SHEET 4 AA2 7 SER A 242 LEU A 250 -1 O GLU A 245 N THR A 176 SHEET 5 AA2 7 SER A 305 TYR A 314 -1 O SER A 312 N THR A 244 SHEET 6 AA2 7 SER A 290 ASP A 293 -1 N LEU A 291 O TRP A 313 SHEET 7 AA2 7 PHE A 271 THR A 274 1 N GLY A 272 O SER A 290 SHEET 1 AA3 6 VAL A 208 SER A 211 0 SHEET 2 AA3 6 LEU A 229 VAL A 236 -1 O ARG A 235 N VAL A 208 SHEET 3 AA3 6 ILE A 170 ALA A 180 1 N HIS A 179 O VAL A 236 SHEET 4 AA3 6 SER A 242 LEU A 250 -1 O GLU A 245 N THR A 176 SHEET 5 AA3 6 SER A 305 TYR A 314 -1 O SER A 312 N THR A 244 SHEET 6 AA3 6 LYS A 298 VAL A 302 -1 N MET A 300 O LEU A 307 SHEET 1 AA4 9 VAL B 58 LYS B 61 0 SHEET 2 AA4 9 GLY B 64 VAL B 67 -1 O GLU B 66 N GLU B 59 SHEET 3 AA4 9 ASN B 70 SER B 75 -1 O ILE B 72 N PHE B 65 SHEET 4 AA4 9 VAL B 27 ASN B 33 1 N ILE B 32 O LYS B 73 SHEET 5 AA4 9 VAL B 3 ASN B 8 1 N ILE B 7 O ASN B 33 SHEET 6 AA4 9 ILE B 92 GLU B 95 1 O LEU B 94 N GLY B 6 SHEET 7 AA4 9 LYS B 117 ILE B 120 1 O VAL B 119 N VAL B 93 SHEET 8 AA4 9 VAL B 146 SER B 148 1 O ILE B 147 N ILE B 120 SHEET 9 AA4 9 LYS B 129 THR B 130 1 N LYS B 129 O SER B 148 SHEET 1 AA5 7 VAL B 208 SER B 211 0 SHEET 2 AA5 7 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA5 7 ILE B 170 ALA B 180 1 N THR B 177 O GLN B 234 SHEET 4 AA5 7 SER B 242 LEU B 250 -1 O GLU B 245 N THR B 176 SHEET 5 AA5 7 SER B 305 TYR B 314 -1 O SER B 312 N THR B 244 SHEET 6 AA5 7 SER B 290 ASP B 293 -1 N LEU B 291 O TRP B 313 SHEET 7 AA5 7 PHE B 271 THR B 274 1 N GLY B 272 O SER B 290 SHEET 1 AA6 6 VAL B 208 SER B 211 0 SHEET 2 AA6 6 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA6 6 ILE B 170 ALA B 180 1 N THR B 177 O GLN B 234 SHEET 4 AA6 6 SER B 242 LEU B 250 -1 O GLU B 245 N THR B 176 SHEET 5 AA6 6 SER B 305 TYR B 314 -1 O SER B 312 N THR B 244 SHEET 6 AA6 6 LYS B 298 VAL B 302 -1 N MET B 300 O LEU B 307 SITE 1 AC1 35 ASN A 8 GLY A 9 GLY A 11 ARG A 12 SITE 2 AC1 35 ILE A 13 ASP A 34 LEU A 35 ARG A 78 SITE 3 AC1 35 ALA A 96 THR A 97 GLY A 98 PHE A 99 SITE 4 AC1 35 PHE A 100 THR A 121 ALA A 122 CYS A 152 SITE 5 AC1 35 PRO A 191 ASN A 316 TYR A 320 HOH A 516 SITE 6 AC1 35 HOH A 596 HOH A 597 HOH A 598 HOH A 628 SITE 7 AC1 35 HOH A 643 HOH A 661 HOH A 677 HOH A 703 SITE 8 AC1 35 HOH A 704 HOH A 708 HOH A 709 HOH A 714 SITE 9 AC1 35 HOH A 716 HOH A 739 HOH A 742 SITE 1 AC2 7 ASN A 39 HIS A 43 LYS A 46 TYR A 47 SITE 2 AC2 7 HOH A 523 HOH A 705 ASP B 276 SITE 1 AC3 34 GLY B 9 GLY B 11 ARG B 12 ILE B 13 SITE 2 AC3 34 ASP B 34 LEU B 35 ARG B 78 ALA B 96 SITE 3 AC3 34 THR B 97 GLY B 98 PHE B 99 PHE B 100 SITE 4 AC3 34 THR B 121 ALA B 122 PRO B 191 ASN B 316 SITE 5 AC3 34 TYR B 320 HOH B 596 HOH B 601 HOH B 606 SITE 6 AC3 34 HOH B 623 HOH B 627 HOH B 630 HOH B 645 SITE 7 AC3 34 HOH B 654 HOH B 673 HOH B 680 HOH B 682 SITE 8 AC3 34 HOH B 721 HOH B 725 HOH B 733 HOH B 759 SITE 9 AC3 34 HOH B 760 HOH B 896 SITE 1 AC4 6 ASN B 134 HIS B 137 ASN B 268 HOH B 514 SITE 2 AC4 6 HOH B 542 HOH B 863 SITE 1 AC5 11 PRO B 123 SER B 151 THR B 154 GLY B 213 SITE 2 AC5 11 ALA B 214 ALA B 217 HOH B 502 HOH B 505 SITE 3 AC5 11 HOH B 507 HOH B 648 HOH B 842 SITE 1 AC6 5 THR A 295 ARG B 198 ASN B 210 HOH B 605 SITE 2 AC6 5 HOH B 634 CRYST1 79.266 91.603 106.265 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009410 0.00000