HEADER TRANSCRIPTION 15-MAR-18 6FZT TITLE CRYSTAL STRUCTURE OF SMAD8_9-MH1 BOUND TO THE GGCGC SITE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 9; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MOTHERS AGAINST DPP HOMOLOG 9,MADH6,SMAD FAMILY MEMBER 9, COMPND 5 SMAD9; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3'); COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMAD9, MADH6, MADH9, SMAD8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS SMADS, TRANSCRIPTION FACTOR, DNA COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.KACZMARSKA,J.A.MARQUEZ,M.J.MACIAS REVDAT 4 17-JAN-24 6FZT 1 REMARK REVDAT 3 20-JAN-21 6FZT 1 JRNL REVDAT 2 07-OCT-20 6FZT 1 REMARK REVDAT 1 02-OCT-19 6FZT 0 JRNL AUTH L.RUIZ,Z.KACZMARSKA,T.GOMES,E.ARAGON,C.TORNER,R.FREIER, JRNL AUTH 2 B.BAGINSKI,P.MARTIN-MALPARTIDA,J.A.MARQUEZ,T.N.CORDEIRO, JRNL AUTH 3 R.PLUTA,M.J.MACIAS JRNL TITL UNVEILING THE DIMER/MONOMER PROPENSITIES OF SMAD MH1-DNA JRNL TITL 2 COMPLEXES JRNL REF COMPUTATIONAL AND STRUCTURAL V. 19 2021 JRNL REF 2 BIOTECHNOLOGY JOURNAL JRNL DOI 10.1016/J.CSBJ.2020.12.044 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.7 REMARK 3 NUMBER OF REFLECTIONS : 15793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 766 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 22.28 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 787 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2370 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 756 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE : 0.2375 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.94 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2040 REMARK 3 NUCLEIC ACID ATOMS : 656 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.06690 REMARK 3 B22 (A**2) : -1.05480 REMARK 3 B33 (A**2) : -1.01200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.330 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.461 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.271 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.408 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.265 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2857 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4001 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 901 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 384 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2857 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 352 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2790 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.90 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 23.41 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -4.4627 -10.2857 -4.8382 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: -0.0950 REMARK 3 T33: -0.1187 T12: -0.0325 REMARK 3 T13: 0.0303 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.3124 L22: 1.1367 REMARK 3 L33: 2.1046 L12: -0.0903 REMARK 3 L13: -1.0607 L23: -0.4100 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -0.1479 S13: -0.1109 REMARK 3 S21: 0.1395 S22: 0.0575 S23: 0.1296 REMARK 3 S31: 0.1806 S32: -0.1514 S33: -0.0167 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -17.5518 33.0980 -18.7653 REMARK 3 T TENSOR REMARK 3 T11: -0.0634 T22: -0.0972 REMARK 3 T33: -0.0331 T12: 0.0347 REMARK 3 T13: 0.0243 T23: -0.0702 REMARK 3 L TENSOR REMARK 3 L11: 2.7313 L22: 0.3477 REMARK 3 L33: 3.9787 L12: 0.0515 REMARK 3 L13: -1.9511 L23: -0.0860 REMARK 3 S TENSOR REMARK 3 S11: 0.0989 S12: -0.1526 S13: 0.2716 REMARK 3 S21: 0.0302 S22: -0.0288 S23: 0.1426 REMARK 3 S31: -0.3268 S32: -0.3154 S33: -0.0701 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -14.1353 12.7866 -10.4654 REMARK 3 T TENSOR REMARK 3 T11: -0.2295 T22: -0.2975 REMARK 3 T33: -0.3922 T12: -0.0455 REMARK 3 T13: -0.0097 T23: -0.1358 REMARK 3 L TENSOR REMARK 3 L11: 8.2157 L22: 16.6309 REMARK 3 L33: 4.6217 L12: -4.4698 REMARK 3 L13: -2.8040 L23: -4.8819 REMARK 3 S TENSOR REMARK 3 S11: -0.1523 S12: -0.4243 S13: -0.1511 REMARK 3 S21: -0.8026 S22: 0.6337 S23: -0.3957 REMARK 3 S31: -0.1386 S32: -0.6544 S33: -0.4814 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -13.0248 10.2054 -9.1349 REMARK 3 T TENSOR REMARK 3 T11: -0.3115 T22: -0.3103 REMARK 3 T33: -0.2925 T12: -0.1709 REMARK 3 T13: -0.0419 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 4.4405 L22: 16.6309 REMARK 3 L33: 9.3995 L12: -3.7036 REMARK 3 L13: -2.1677 L23: -3.5871 REMARK 3 S TENSOR REMARK 3 S11: -0.1322 S12: -0.6456 S13: -0.4243 REMARK 3 S21: -0.4523 S22: 0.7052 S23: -0.6298 REMARK 3 S31: 0.1763 S32: -0.4772 S33: -0.5730 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 59.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FZS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NAF, 0.1 M BIS-TRIS PROPANE PH REMARK 280 8.5, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.71650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.18600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.75450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.18600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.71650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.75450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -39.75450 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.18600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 HIS A -1 REMARK 465 SER A 0 REMARK 465 THR A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 LEU A 136 REMARK 465 PRO A 137 REMARK 465 MET B -2 REMARK 465 HIS B -1 REMARK 465 SER B 0 REMARK 465 THR B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 ILE B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 LEU B 7 REMARK 465 PHE B 8 REMARK 465 SER B 9 REMARK 465 LEU B 136 REMARK 465 PRO B 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 6 OG REMARK 470 LEU A 7 CG CD1 CD2 REMARK 470 SER A 37 OG REMARK 470 LYS A 40 CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 THR A 133 OG1 CG2 REMARK 470 VAL A 135 CG1 CG2 REMARK 470 PHE B 10 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 43 CD CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 VAL B 135 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 3 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA C 4 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC C 11 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 12 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 3 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 12 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 94 -57.46 -130.68 REMARK 500 ARG B 94 -56.12 -134.53 REMARK 500 LYS B 117 70.21 43.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 110 SG 114.7 REMARK 620 3 CYS A 122 SG 102.2 112.2 REMARK 620 4 HIS A 127 ND1 106.3 111.0 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 CYS B 110 SG 111.0 REMARK 620 3 CYS B 122 SG 107.2 114.6 REMARK 620 4 HIS B 127 ND1 102.7 108.5 112.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 DBREF 6FZT A -2 137 UNP O15198 SMAD9_HUMAN 1 140 DBREF 6FZT B -2 137 UNP O15198 SMAD9_HUMAN 1 140 DBREF 6FZT C 1 16 PDB 6FZT 6FZT 1 16 DBREF 6FZT D 1 16 PDB 6FZT 6FZT 1 16 SEQRES 1 A 140 MET HIS SER THR THR PRO ILE SER SER LEU PHE SER PHE SEQRES 2 A 140 THR SER PRO ALA VAL LYS ARG LEU LEU GLY TRP LYS GLN SEQRES 3 A 140 GLY ASP GLU GLU GLU LYS TRP ALA GLU LYS ALA VAL ASP SEQRES 4 A 140 SER LEU VAL LYS LYS LEU LYS LYS LYS LYS GLY ALA MET SEQRES 5 A 140 ASP GLU LEU GLU ARG ALA LEU SER CYS PRO GLY GLN PRO SEQRES 6 A 140 SER LYS CYS VAL THR ILE PRO ARG SER LEU ASP GLY ARG SEQRES 7 A 140 LEU GLN VAL SER HIS ARG LYS GLY LEU PRO HIS VAL ILE SEQRES 8 A 140 TYR CYS ARG VAL TRP ARG TRP PRO ASP LEU GLN SER HIS SEQRES 9 A 140 HIS GLU LEU LYS PRO LEU GLU CYS CYS GLU PHE PRO PHE SEQRES 10 A 140 GLY SER LYS GLN LYS GLU VAL CYS ILE ASN PRO TYR HIS SEQRES 11 A 140 TYR ARG ARG VAL GLU THR PRO VAL LEU PRO SEQRES 1 B 140 MET HIS SER THR THR PRO ILE SER SER LEU PHE SER PHE SEQRES 2 B 140 THR SER PRO ALA VAL LYS ARG LEU LEU GLY TRP LYS GLN SEQRES 3 B 140 GLY ASP GLU GLU GLU LYS TRP ALA GLU LYS ALA VAL ASP SEQRES 4 B 140 SER LEU VAL LYS LYS LEU LYS LYS LYS LYS GLY ALA MET SEQRES 5 B 140 ASP GLU LEU GLU ARG ALA LEU SER CYS PRO GLY GLN PRO SEQRES 6 B 140 SER LYS CYS VAL THR ILE PRO ARG SER LEU ASP GLY ARG SEQRES 7 B 140 LEU GLN VAL SER HIS ARG LYS GLY LEU PRO HIS VAL ILE SEQRES 8 B 140 TYR CYS ARG VAL TRP ARG TRP PRO ASP LEU GLN SER HIS SEQRES 9 B 140 HIS GLU LEU LYS PRO LEU GLU CYS CYS GLU PHE PRO PHE SEQRES 10 B 140 GLY SER LYS GLN LYS GLU VAL CYS ILE ASN PRO TYR HIS SEQRES 11 B 140 TYR ARG ARG VAL GLU THR PRO VAL LEU PRO SEQRES 1 C 16 DT DG DC DA DG DG DC DG DC DG DC DC DT SEQRES 2 C 16 DG DC DA SEQRES 1 D 16 DT DG DC DA DG DG DC DG DC DG DC DC DT SEQRES 2 D 16 DG DC DA HET ZN A 201 1 HET GOL A 202 6 HET ZN B 201 1 HET GOL B 202 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN 2(ZN 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 9 HOH *123(H2 O) HELIX 1 AA1 SER A 12 GLY A 20 1 9 HELIX 2 AA2 ASP A 25 LYS A 43 1 19 HELIX 3 AA3 GLY A 47 CYS A 58 1 12 HELIX 4 AA4 LEU A 84 ARG A 94 1 11 HELIX 5 AA5 SER A 100 HIS A 102 5 3 HELIX 6 AA6 ASN A 124 TYR A 126 5 3 HELIX 7 AA7 SER B 12 GLY B 20 1 9 HELIX 8 AA8 ASP B 25 LYS B 43 1 19 HELIX 9 AA9 GLY B 47 CYS B 58 1 12 HELIX 10 AB1 LEU B 84 ARG B 94 1 11 HELIX 11 AB2 SER B 100 HIS B 102 5 3 HELIX 12 AB3 ASN B 124 TYR B 126 5 3 SHEET 1 AA1 2 THR A 67 PRO A 69 0 SHEET 2 AA1 2 GLU A 120 CYS A 122 -1 O VAL A 121 N ILE A 68 SHEET 1 AA2 2 LEU A 76 VAL A 78 0 SHEET 2 AA2 2 ARG A 81 GLY A 83 -1 O GLY A 83 N LEU A 76 SHEET 1 AA3 2 LEU A 104 PRO A 106 0 SHEET 2 AA3 2 TYR A 128 ARG A 130 -1 O ARG A 129 N LYS A 105 SHEET 1 AA4 2 THR B 67 PRO B 69 0 SHEET 2 AA4 2 GLU B 120 CYS B 122 -1 O VAL B 121 N ILE B 68 SHEET 1 AA5 2 LEU B 76 VAL B 78 0 SHEET 2 AA5 2 ARG B 81 GLY B 83 -1 O GLY B 83 N LEU B 76 SHEET 1 AA6 2 LEU B 104 PRO B 106 0 SHEET 2 AA6 2 TYR B 128 ARG B 130 -1 O ARG B 129 N LYS B 105 LINK SG CYS A 65 ZN ZN A 201 1555 1555 2.38 LINK SG CYS A 110 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 122 ZN ZN A 201 1555 1555 2.54 LINK ND1 HIS A 127 ZN ZN A 201 1555 1555 2.01 LINK SG CYS B 65 ZN ZN B 201 1555 1555 2.48 LINK SG CYS B 110 ZN ZN B 201 1555 1555 2.35 LINK SG CYS B 122 ZN ZN B 201 1555 1555 2.27 LINK ND1 HIS B 127 ZN ZN B 201 1555 1555 2.03 SITE 1 AC1 4 CYS A 65 CYS A 110 CYS A 122 HIS A 127 SITE 1 AC2 5 LEU A 19 LYS A 22 GLU A 28 HOH A 320 SITE 2 AC2 5 GLU B 28 SITE 1 AC3 4 CYS B 65 CYS B 110 CYS B 122 HIS B 127 SITE 1 AC4 6 GLU B 27 TRP B 30 ARG B 81 LYS B 82 SITE 2 AC4 6 ARG B 91 HOH B 311 CRYST1 75.433 79.509 88.372 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013257 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011316 0.00000