HEADER VIRAL PROTEIN 15-MAR-18 6G02 TITLE COMPLEX OF NEURAMINIDASE FROM H1N1 INFLUENZA VIRUS WITH TAMIPHOSPHOR TITLE 2 OMEGA-AZIDOHEXYL ESTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 82-468; COMPND 5 EC: 3.2.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/CALIFORNIA/07/2009(H1N1)); SOURCE 3 ORGANISM_TAXID: 641809; SOURCE 4 GENE: NA; SOURCE 5 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS NEURAMINIDASE, INFLUENZA, COMPLEX, INHIBITOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PACHL,J.POKORNA REVDAT 2 29-JUL-20 6G02 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 23-JAN-19 6G02 0 JRNL AUTH M.KOZISEK,V.NAVRATIL,K.ROJIKOVA,J.POKORNA, JRNL AUTH 2 C.BERENGUER ALBINANA,P.PACHL,J.ZEMANOVA,A.MACHARA,P.SACHA, JRNL AUTH 3 J.HUDLICKY,I.CISAROVA,P.REZACOVA,J.KONVALINKA JRNL TITL DNA-LINKED INHIBITOR ANTIBODY ASSAY (DIANA) AS A NEW METHOD JRNL TITL 2 FOR SCREENING INFLUENZA NEURAMINIDASE INHIBITORS. JRNL REF BIOCHEM. J. V. 475 3847 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 30404922 JRNL DOI 10.1042/BCJ20180764 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 70147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1799 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5127 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 191 REMARK 3 SOLVENT ATOMS : 793 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6372 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5560 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8653 ; 1.660 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12978 ; 3.771 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 778 ; 7.304 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 279 ;34.428 ;24.050 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 963 ;13.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;13.804 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 910 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7083 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1338 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3103 ; 1.359 ; 1.821 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3102 ; 1.355 ; 1.821 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3878 ; 1.978 ; 2.724 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3879 ; 1.980 ; 2.724 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3269 ; 2.061 ; 2.082 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3269 ; 2.058 ; 2.082 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4774 ; 3.202 ; 3.045 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7444 ; 4.528 ;22.976 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7445 ; 4.527 ;22.979 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 42.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.55 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 8% PEG 8000, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 114.86000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 114.86000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 114.86000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 114.86000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 930 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 947 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 988 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 932 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 950 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 964 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 223 65.14 60.08 REMARK 500 THR A 226 -155.52 -139.21 REMARK 500 ALA A 251 -168.16 -128.71 REMARK 500 ASP A 284 117.59 -163.81 REMARK 500 CYS A 292 -162.80 -125.25 REMARK 500 TRP A 296 -60.20 -96.56 REMARK 500 HIS A 297 40.61 -161.31 REMARK 500 ASN A 344 -178.14 73.46 REMARK 500 SER A 400 -139.92 -115.87 REMARK 500 TRP A 455 -165.04 -162.16 REMARK 500 ILE B 223 65.73 62.07 REMARK 500 THR B 226 -159.69 -140.68 REMARK 500 ASP B 284 113.02 -163.15 REMARK 500 CYS B 292 -169.45 -129.03 REMARK 500 HIS B 297 43.40 -159.33 REMARK 500 LYS B 331 -163.10 -161.25 REMARK 500 ASN B 344 -173.77 64.80 REMARK 500 ILE B 393 -51.84 -121.83 REMARK 500 SER B 400 -140.96 -123.52 REMARK 500 TRP B 455 -160.99 -162.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1005 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 O REMARK 620 2 GLY A 298 O 85.7 REMARK 620 3 ASP A 324 OD2 91.7 90.2 REMARK 620 4 GLY A 342 O 98.2 83.9 168.0 REMARK 620 5 ASN A 344 O 91.8 169.4 100.2 86.3 REMARK 620 6 HOH A 764 O 177.7 95.0 86.1 84.0 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 294 O REMARK 620 2 GLY B 298 O 87.8 REMARK 620 3 ASP B 324 OD2 94.7 88.4 REMARK 620 4 GLY B 342 O 98.9 86.5 165.3 REMARK 620 5 ASN B 344 O 91.3 168.9 102.8 82.7 REMARK 620 6 HOH B 608 O 178.7 92.9 84.2 82.3 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 376 OD1 REMARK 620 2 ASP B 376 OD2 44.3 REMARK 620 3 ASP B 384 O 129.3 97.6 REMARK 620 4 HOH B 885 O 124.4 156.9 102.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6G01 RELATED DB: PDB REMARK 900 6G01 CONTAINS THE SAME PROTEIN DBREF 6G02 A 82 468 UNP C3W6G3 C3W6G3_9INFA 82 468 DBREF 6G02 B 82 468 UNP C3W6G3 C3W6G3_9INFA 82 468 SEQRES 1 A 387 SER VAL LYS LEU ALA GLY ASN SER SER LEU CYS PRO VAL SEQRES 2 A 387 SER GLY TRP ALA ILE TYR SER LYS ASP ASN SER VAL ARG SEQRES 3 A 387 ILE GLY SER LYS GLY ASP VAL PHE VAL ILE ARG GLU PRO SEQRES 4 A 387 PHE ILE SER CYS SER PRO LEU GLU CYS ARG THR PHE PHE SEQRES 5 A 387 LEU THR GLN GLY ALA LEU LEU ASN ASP LYS HIS SER ASN SEQRES 6 A 387 GLY THR ILE LYS ASP ARG SER PRO TYR ARG THR LEU MET SEQRES 7 A 387 SER CYS PRO ILE GLY GLU VAL PRO SER PRO TYR ASN SER SEQRES 8 A 387 ARG PHE GLU SER VAL ALA TRP SER ALA SER ALA CYS HIS SEQRES 9 A 387 ASP GLY ILE ASN TRP LEU THR ILE GLY ILE SER GLY PRO SEQRES 10 A 387 ASP ASN GLY ALA VAL ALA VAL LEU LYS TYR ASN GLY ILE SEQRES 11 A 387 ILE THR ASP THR ILE LYS SER TRP ARG ASN ASN ILE LEU SEQRES 12 A 387 ARG THR GLN GLU SER GLU CYS ALA CYS VAL ASN GLY SER SEQRES 13 A 387 CYS PHE THR VAL MET THR ASP GLY PRO SER ASN GLY GLN SEQRES 14 A 387 ALA SER TYR LYS ILE PHE ARG ILE GLU LYS GLY LYS ILE SEQRES 15 A 387 VAL LYS SER VAL GLU MET ASN ALA PRO ASN TYR HIS TYR SEQRES 16 A 387 GLU GLU CYS SER CYS TYR PRO ASP SER SER GLU ILE THR SEQRES 17 A 387 CYS VAL CYS ARG ASP ASN TRP HIS GLY SER ASN ARG PRO SEQRES 18 A 387 TRP VAL SER PHE ASN GLN ASN LEU GLU TYR GLN ILE GLY SEQRES 19 A 387 TYR ILE CYS SER GLY ILE PHE GLY ASP ASN PRO ARG PRO SEQRES 20 A 387 ASN ASP LYS THR GLY SER CYS GLY PRO VAL SER SER ASN SEQRES 21 A 387 GLY ALA ASN GLY VAL LYS GLY PHE SER PHE LYS TYR GLY SEQRES 22 A 387 ASN GLY VAL TRP ILE GLY ARG THR LYS SER ILE SER SER SEQRES 23 A 387 ARG ASN GLY PHE GLU MET ILE TRP ASP PRO ASN GLY TRP SEQRES 24 A 387 THR GLY THR ASP ASN ASN PHE SER ILE LYS GLN ASP ILE SEQRES 25 A 387 VAL GLY ILE ASN GLU TRP SER GLY TYR SER GLY SER PHE SEQRES 26 A 387 VAL GLN HIS PRO GLU LEU THR GLY LEU ASP CYS ILE ARG SEQRES 27 A 387 PRO CYS PHE TRP VAL GLU LEU ILE ARG GLY ARG PRO LYS SEQRES 28 A 387 GLU ASN THR ILE TRP THR SER GLY SER SER ILE SER PHE SEQRES 29 A 387 CYS GLY VAL ASN SER ASP THR VAL GLY TRP SER TRP PRO SEQRES 30 A 387 ASP GLY ALA GLU LEU PRO PHE THR ILE ASP SEQRES 1 B 387 SER VAL LYS LEU ALA GLY ASN SER SER LEU CYS PRO VAL SEQRES 2 B 387 SER GLY TRP ALA ILE TYR SER LYS ASP ASN SER VAL ARG SEQRES 3 B 387 ILE GLY SER LYS GLY ASP VAL PHE VAL ILE ARG GLU PRO SEQRES 4 B 387 PHE ILE SER CYS SER PRO LEU GLU CYS ARG THR PHE PHE SEQRES 5 B 387 LEU THR GLN GLY ALA LEU LEU ASN ASP LYS HIS SER ASN SEQRES 6 B 387 GLY THR ILE LYS ASP ARG SER PRO TYR ARG THR LEU MET SEQRES 7 B 387 SER CYS PRO ILE GLY GLU VAL PRO SER PRO TYR ASN SER SEQRES 8 B 387 ARG PHE GLU SER VAL ALA TRP SER ALA SER ALA CYS HIS SEQRES 9 B 387 ASP GLY ILE ASN TRP LEU THR ILE GLY ILE SER GLY PRO SEQRES 10 B 387 ASP ASN GLY ALA VAL ALA VAL LEU LYS TYR ASN GLY ILE SEQRES 11 B 387 ILE THR ASP THR ILE LYS SER TRP ARG ASN ASN ILE LEU SEQRES 12 B 387 ARG THR GLN GLU SER GLU CYS ALA CYS VAL ASN GLY SER SEQRES 13 B 387 CYS PHE THR VAL MET THR ASP GLY PRO SER ASN GLY GLN SEQRES 14 B 387 ALA SER TYR LYS ILE PHE ARG ILE GLU LYS GLY LYS ILE SEQRES 15 B 387 VAL LYS SER VAL GLU MET ASN ALA PRO ASN TYR HIS TYR SEQRES 16 B 387 GLU GLU CYS SER CYS TYR PRO ASP SER SER GLU ILE THR SEQRES 17 B 387 CYS VAL CYS ARG ASP ASN TRP HIS GLY SER ASN ARG PRO SEQRES 18 B 387 TRP VAL SER PHE ASN GLN ASN LEU GLU TYR GLN ILE GLY SEQRES 19 B 387 TYR ILE CYS SER GLY ILE PHE GLY ASP ASN PRO ARG PRO SEQRES 20 B 387 ASN ASP LYS THR GLY SER CYS GLY PRO VAL SER SER ASN SEQRES 21 B 387 GLY ALA ASN GLY VAL LYS GLY PHE SER PHE LYS TYR GLY SEQRES 22 B 387 ASN GLY VAL TRP ILE GLY ARG THR LYS SER ILE SER SER SEQRES 23 B 387 ARG ASN GLY PHE GLU MET ILE TRP ASP PRO ASN GLY TRP SEQRES 24 B 387 THR GLY THR ASP ASN ASN PHE SER ILE LYS GLN ASP ILE SEQRES 25 B 387 VAL GLY ILE ASN GLU TRP SER GLY TYR SER GLY SER PHE SEQRES 26 B 387 VAL GLN HIS PRO GLU LEU THR GLY LEU ASP CYS ILE ARG SEQRES 27 B 387 PRO CYS PHE TRP VAL GLU LEU ILE ARG GLY ARG PRO LYS SEQRES 28 B 387 GLU ASN THR ILE TRP THR SER GLY SER SER ILE SER PHE SEQRES 29 B 387 CYS GLY VAL ASN SER ASP THR VAL GLY TRP SER TRP PRO SEQRES 30 B 387 ASP GLY ALA GLU LEU PRO PHE THR ILE ASP HET CA A 501 1 HET EF8 A 502 30 HET NAG A 503 14 HET NAG A 504 14 HET NAG A 505 14 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET CA B 501 1 HET CA B 502 1 HET EF8 B 503 30 HET NAG B 504 14 HET NAG B 505 14 HET NAG B 506 14 HET EDO B 507 4 HET EDO B 508 4 HET EDO B 509 4 HET EDO B 510 4 HET EDO B 511 4 HETNAM CA CALCIUM ION HETNAM EF8 6-[[(3~{R},4~{R},5~{S})-4-ACETAMIDO-5-AZANYL-3-PENTAN- HETNAM 2 EF8 3-YLOXY-CYCLOHEXEN-1-YL]-OXIDANYL- HETNAM 3 EF8 PHOSPHORYL]OXYHEXYLIMINO-AZANYLIDENE-AZANIUM HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 3(CA 2+) FORMUL 4 EF8 2(C19 H37 N5 O5 P 1+) FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 8 EDO 11(C2 H6 O2) FORMUL 25 HOH *793(H2 O) HELIX 1 AA1 ASN A 104 SER A 110 1 7 HELIX 2 AA2 ASP A 142 ASN A 146 5 5 HELIX 3 AA3 HIS A 409 GLY A 414 1 6 HELIX 4 AA4 ASN B 104 SER B 110 1 7 HELIX 5 AA5 ASP B 142 ASN B 146 5 5 HELIX 6 AA6 HIS B 409 GLY B 414 1 6 SHEET 1 AA1 4 GLY A 96 LYS A 102 0 SHEET 2 AA1 4 THR A 438 VAL A 448 -1 O CYS A 446 N ALA A 98 SHEET 3 AA1 4 ARG A 419 GLY A 429 -1 N ARG A 428 O SER A 439 SHEET 4 AA1 4 SER A 403 GLN A 408 -1 N GLN A 408 O ARG A 419 SHEET 1 AA2 4 PHE A 115 CYS A 124 0 SHEET 2 AA2 4 CYS A 129 LEU A 139 -1 O PHE A 132 N PHE A 121 SHEET 3 AA2 4 THR A 157 PRO A 162 -1 O THR A 157 N THR A 135 SHEET 4 AA2 4 ARG A 173 VAL A 177 -1 O SER A 176 N LEU A 158 SHEET 1 AA3 4 SER A 180 HIS A 185 0 SHEET 2 AA3 4 TRP A 190 SER A 196 -1 O LEU A 191 N CYS A 184 SHEET 3 AA3 4 VAL A 203 TYR A 208 -1 O VAL A 205 N GLY A 194 SHEET 4 AA3 4 ILE A 211 LYS A 217 -1 O ILE A 216 N ALA A 204 SHEET 1 AA4 4 ALA A 232 VAL A 234 0 SHEET 2 AA4 4 SER A 237 ASP A 244 -1 O PHE A 239 N ALA A 232 SHEET 3 AA4 4 SER A 252 GLU A 259 -1 O ILE A 258 N CYS A 238 SHEET 4 AA4 4 LYS A 262 GLU A 268 -1 O LYS A 265 N ARG A 257 SHEET 1 AA5 4 GLU A 277 ASP A 284 0 SHEET 2 AA5 4 GLU A 287 ARG A 293 -1 O VAL A 291 N SER A 280 SHEET 3 AA5 4 PRO A 302 PHE A 306 -1 O PHE A 306 N ILE A 288 SHEET 4 AA5 4 TYR A 312 TYR A 316 -1 O GLY A 315 N TRP A 303 SHEET 1 AA6 4 SER A 350 TYR A 353 0 SHEET 2 AA6 4 GLY A 356 ARG A 361 -1 O GLY A 356 N TYR A 353 SHEET 3 AA6 4 ASN A 369 ASP A 376 -1 O ASP A 376 N VAL A 357 SHEET 4 AA6 4 ILE A 389 TRP A 399 -1 O GLN A 391 N MET A 373 SHEET 1 AA7 4 GLY B 96 LYS B 102 0 SHEET 2 AA7 4 THR B 438 VAL B 448 -1 O SER B 444 N TYR B 100 SHEET 3 AA7 4 ARG B 419 GLY B 429 -1 N ARG B 428 O SER B 439 SHEET 4 AA7 4 SER B 403 GLN B 408 -1 N GLN B 408 O ARG B 419 SHEET 1 AA8 4 PHE B 115 CYS B 124 0 SHEET 2 AA8 4 CYS B 129 LEU B 139 -1 O PHE B 132 N PHE B 121 SHEET 3 AA8 4 THR B 157 PRO B 162 -1 O THR B 157 N THR B 135 SHEET 4 AA8 4 ARG B 173 VAL B 177 -1 O SER B 176 N LEU B 158 SHEET 1 AA9 4 SER B 180 HIS B 185 0 SHEET 2 AA9 4 TRP B 190 SER B 196 -1 O LEU B 191 N CYS B 184 SHEET 3 AA9 4 VAL B 203 TYR B 208 -1 O VAL B 205 N GLY B 194 SHEET 4 AA9 4 ILE B 211 LYS B 217 -1 O ASP B 214 N LEU B 206 SHEET 1 AB1 4 ALA B 232 VAL B 234 0 SHEET 2 AB1 4 SER B 237 ASP B 244 -1 O SER B 237 N VAL B 234 SHEET 3 AB1 4 SER B 252 GLU B 259 -1 O ILE B 258 N CYS B 238 SHEET 4 AB1 4 LYS B 262 GLU B 268 -1 O LYS B 265 N ARG B 257 SHEET 1 AB2 4 GLU B 277 ASP B 284 0 SHEET 2 AB2 4 GLU B 287 ARG B 293 -1 O VAL B 291 N SER B 280 SHEET 3 AB2 4 PRO B 302 PHE B 306 -1 O PRO B 302 N CYS B 292 SHEET 4 AB2 4 TYR B 312 TYR B 316 -1 O GLY B 315 N TRP B 303 SHEET 1 AB3 4 SER B 350 TYR B 353 0 SHEET 2 AB3 4 GLY B 356 ARG B 361 -1 O TRP B 358 N PHE B 351 SHEET 3 AB3 4 ASN B 369 ASP B 376 -1 O ILE B 374 N ILE B 359 SHEET 4 AB3 4 ILE B 389 TRP B 399 -1 O GLN B 391 N MET B 373 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.04 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.07 SSBOND 3 CYS A 184 CYS A 231 1555 1555 2.05 SSBOND 4 CYS A 233 CYS A 238 1555 1555 2.05 SSBOND 5 CYS A 279 CYS A 292 1555 1555 2.07 SSBOND 6 CYS A 281 CYS A 290 1555 1555 2.05 SSBOND 7 CYS A 318 CYS A 335 1555 1555 2.07 SSBOND 8 CYS A 421 CYS A 446 1555 1555 2.12 SSBOND 9 CYS B 92 CYS B 417 1555 1555 2.04 SSBOND 10 CYS B 124 CYS B 129 1555 1555 2.09 SSBOND 11 CYS B 184 CYS B 231 1555 1555 2.03 SSBOND 12 CYS B 233 CYS B 238 1555 1555 2.05 SSBOND 13 CYS B 279 CYS B 292 1555 1555 2.04 SSBOND 14 CYS B 281 CYS B 290 1555 1555 2.10 SSBOND 15 CYS B 318 CYS B 335 1555 1555 2.08 SSBOND 16 CYS B 421 CYS B 446 1555 1555 2.05 LINK ND2 ASN A 88 C1 NAG A 503 1555 1555 1.44 LINK ND2 ASN A 146 C1 NAG A 504 1555 1555 1.45 LINK ND2 ASN A 235 C1 NAG A 505 1555 1555 1.46 LINK ND2 ASN B 88 C1 NAG B 504 1555 1555 1.44 LINK ND2 ASN B 146 C1 NAG B 505 1555 1555 1.46 LINK ND2 ASN B 386 C1 NAG B 506 1555 1555 1.42 LINK O ASP A 294 CA CA A 501 1555 1555 2.31 LINK O GLY A 298 CA CA A 501 1555 1555 2.36 LINK OD2 ASP A 324 CA CA A 501 1555 1555 2.36 LINK O GLY A 342 CA CA A 501 1555 1555 2.44 LINK O ASN A 344 CA CA A 501 1555 1555 2.25 LINK CA CA A 501 O HOH A 764 1555 1555 2.30 LINK O ASP B 294 CA CA B 501 1555 1555 2.26 LINK O GLY B 298 CA CA B 501 1555 1555 2.31 LINK OD2 ASP B 324 CA CA B 501 1555 1555 2.34 LINK O GLY B 342 CA CA B 501 1555 1555 2.36 LINK O ASN B 344 CA CA B 501 1555 1555 2.28 LINK OD1 ASP B 376 CA CA B 502 1555 1555 3.13 LINK OD2 ASP B 376 CA CA B 502 1555 1555 2.57 LINK O ASP B 384 CA CA B 502 1555 1555 2.76 LINK CA CA B 501 O HOH B 608 1555 1555 2.52 LINK CA CA B 502 O HOH B 885 1555 1555 2.87 CISPEP 1 ASN A 325 PRO A 326 0 3.88 CISPEP 2 ARG A 430 PRO A 431 0 2.57 CISPEP 3 LEU A 463 PRO A 464 0 -2.98 CISPEP 4 ASN B 325 PRO B 326 0 2.79 CISPEP 5 ARG B 430 PRO B 431 0 4.69 CISPEP 6 LEU B 463 PRO B 464 0 -7.25 CRYST1 114.860 114.860 63.899 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015650 0.00000