HEADER HYDROLASE 17-MAR-18 6G0C TITLE CRYSTAL STRUCTURE OF SDEA CATALYTIC CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITINATING/DEUBIQUITINATING ENZYME SDEA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EFFECTOR PROTEIN SDEA; COMPND 5 EC: 3.4.22.-,2.3.2.-,2.4.2.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: SDEA, LPG2157; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS UBIQUITINATION SDEA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KALAYIL,S.BHOGARAJU,J.BASQUIN,I.DIKIC REVDAT 4 01-MAY-24 6G0C 1 HETSYN REVDAT 3 13-JUN-18 6G0C 1 AUTHOR JRNL REVDAT 2 06-JUN-18 6G0C 1 JRNL REVDAT 1 30-MAY-18 6G0C 0 JRNL AUTH S.KALAYIL,S.BHOGARAJU,F.BONN,D.SHIN,Y.LIU,N.GAN,J.BASQUIN, JRNL AUTH 2 P.GRUMATI,Z.Q.LUO,I.DIKIC JRNL TITL INSIGHTS INTO CATALYSIS AND FUNCTION OF JRNL TITL 2 PHOSPHORIBOSYL-LINKED SERINE UBIQUITINATION. JRNL REF NATURE V. 557 734 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 29795347 JRNL DOI 10.1038/S41586-018-0145-8 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 43693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2217 - 7.0512 0.99 2584 138 0.1962 0.2246 REMARK 3 2 7.0512 - 5.6003 1.00 2618 141 0.2399 0.3156 REMARK 3 3 5.6003 - 4.8934 1.00 2621 139 0.2153 0.2415 REMARK 3 4 4.8934 - 4.4465 1.00 2604 137 0.2015 0.2247 REMARK 3 5 4.4465 - 4.1280 1.00 2591 136 0.2226 0.2696 REMARK 3 6 4.1280 - 3.8848 1.00 2626 139 0.2419 0.2760 REMARK 3 7 3.8848 - 3.6903 1.00 2579 137 0.2620 0.3024 REMARK 3 8 3.6903 - 3.5298 1.00 2623 141 0.2856 0.3472 REMARK 3 9 3.5298 - 3.3939 1.00 2596 134 0.2852 0.3399 REMARK 3 10 3.3939 - 3.2769 1.00 2634 138 0.3023 0.3472 REMARK 3 11 3.2769 - 3.1744 1.00 2619 136 0.3395 0.4075 REMARK 3 12 3.1744 - 3.0837 1.00 2581 136 0.3577 0.3519 REMARK 3 13 3.0837 - 3.0025 1.00 2639 141 0.3622 0.3822 REMARK 3 14 3.0025 - 2.9293 0.99 2618 141 0.3849 0.3860 REMARK 3 15 2.9293 - 2.8627 1.00 2610 138 0.4056 0.3863 REMARK 3 16 2.8627 - 2.8018 0.92 2351 127 0.4571 0.4155 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4957 REMARK 3 ANGLE : 0.505 6717 REMARK 3 CHIRALITY : 0.038 751 REMARK 3 PLANARITY : 0.003 880 REMARK 3 DIHEDRAL : 14.518 2958 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 222:413) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8783 -42.4299 4.3208 REMARK 3 T TENSOR REMARK 3 T11: 0.5986 T22: 0.3132 REMARK 3 T33: 0.5004 T12: -0.0356 REMARK 3 T13: -0.1105 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 1.9243 L22: 3.0586 REMARK 3 L33: 4.1816 L12: 0.1906 REMARK 3 L13: -0.8122 L23: -0.4504 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: -0.0299 S13: -0.0732 REMARK 3 S21: -0.2487 S22: 0.0102 S23: -0.2703 REMARK 3 S31: 0.4007 S32: 0.1552 S33: 0.0721 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 414:465) REMARK 3 ORIGIN FOR THE GROUP (A): -55.7819 -44.2913 3.6620 REMARK 3 T TENSOR REMARK 3 T11: 0.5696 T22: 0.5513 REMARK 3 T33: 0.4698 T12: -0.1304 REMARK 3 T13: -0.0277 T23: -0.0773 REMARK 3 L TENSOR REMARK 3 L11: 3.6650 L22: 6.1579 REMARK 3 L33: 4.8527 L12: 0.7351 REMARK 3 L13: 1.2839 L23: 1.2225 REMARK 3 S TENSOR REMARK 3 S11: -0.1318 S12: 0.3287 S13: -0.4097 REMARK 3 S21: -0.5817 S22: -0.2215 S23: 0.5643 REMARK 3 S31: 0.5368 S32: -0.8095 S33: 0.2959 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 466:582) REMARK 3 ORIGIN FOR THE GROUP (A): -58.1865 -42.9564 -1.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.6191 T22: 0.6439 REMARK 3 T33: 0.4960 T12: 0.0575 REMARK 3 T13: -0.1175 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 2.2827 L22: 3.6112 REMARK 3 L33: 2.6525 L12: 0.3609 REMARK 3 L13: 0.1222 L23: 0.1303 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0861 S13: -0.0235 REMARK 3 S21: -0.1517 S22: -0.1908 S23: 0.6133 REMARK 3 S31: 0.1589 S32: -0.6496 S33: 0.1956 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 583:632) REMARK 3 ORIGIN FOR THE GROUP (A): -74.0043 -2.7431 16.9704 REMARK 3 T TENSOR REMARK 3 T11: 1.3979 T22: 1.0185 REMARK 3 T33: 0.7397 T12: 0.0009 REMARK 3 T13: -0.3278 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 2.1024 L22: 1.0557 REMARK 3 L33: 0.4342 L12: -1.4862 REMARK 3 L13: 0.3070 L23: -0.2501 REMARK 3 S TENSOR REMARK 3 S11: -0.2561 S12: 0.2380 S13: 0.1033 REMARK 3 S21: -0.2768 S22: 0.2340 S23: 0.2443 REMARK 3 S31: -0.4138 S32: 0.0414 S33: -0.0074 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 633:756) REMARK 3 ORIGIN FOR THE GROUP (A): -66.1539 8.8385 24.6663 REMARK 3 T TENSOR REMARK 3 T11: 0.8462 T22: 0.6914 REMARK 3 T33: 0.4948 T12: -0.0747 REMARK 3 T13: -0.1558 T23: 0.1236 REMARK 3 L TENSOR REMARK 3 L11: 5.3628 L22: 5.6582 REMARK 3 L33: 6.6198 L12: 0.9649 REMARK 3 L13: 1.9344 L23: 0.3423 REMARK 3 S TENSOR REMARK 3 S11: -0.2064 S12: 0.3701 S13: 0.5138 REMARK 3 S21: 0.1587 S22: -0.1107 S23: -0.5163 REMARK 3 S31: -0.8589 S32: 0.6379 S33: 0.3069 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 757:795) REMARK 3 ORIGIN FOR THE GROUP (A): -48.6005 -38.0601 30.9949 REMARK 3 T TENSOR REMARK 3 T11: 0.8470 T22: 0.7199 REMARK 3 T33: 0.5139 T12: 0.1434 REMARK 3 T13: -0.0466 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 3.5623 L22: 5.4894 REMARK 3 L33: 4.8271 L12: 1.6540 REMARK 3 L13: 1.1660 L23: 2.3692 REMARK 3 S TENSOR REMARK 3 S11: -0.3558 S12: -0.6211 S13: 0.2076 REMARK 3 S21: 0.3810 S22: 0.1563 S23: -0.2053 REMARK 3 S31: -0.1448 S32: -0.4647 S33: 0.1008 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 796:829) REMARK 3 ORIGIN FOR THE GROUP (A): -42.8811 -26.4828 35.2260 REMARK 3 T TENSOR REMARK 3 T11: 1.1094 T22: 0.7764 REMARK 3 T33: 0.5588 T12: 0.1009 REMARK 3 T13: -0.2275 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.0316 L22: 2.5998 REMARK 3 L33: 7.2316 L12: 0.5390 REMARK 3 L13: 2.3854 L23: 3.1409 REMARK 3 S TENSOR REMARK 3 S11: -1.1095 S12: 0.3918 S13: 0.3153 REMARK 3 S21: -0.2309 S22: 0.4305 S23: 0.2903 REMARK 3 S31: -0.3445 S32: 0.4773 S33: 0.7846 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 830:901) REMARK 3 ORIGIN FOR THE GROUP (A): -45.6291 -31.3740 34.1260 REMARK 3 T TENSOR REMARK 3 T11: 1.0119 T22: 0.6923 REMARK 3 T33: 0.4634 T12: 0.1182 REMARK 3 T13: -0.1455 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 8.5583 L22: 5.9669 REMARK 3 L33: 5.6647 L12: 1.2165 REMARK 3 L13: 4.8608 L23: 1.3637 REMARK 3 S TENSOR REMARK 3 S11: -0.5750 S12: -0.7543 S13: 0.9613 REMARK 3 S21: 0.6334 S22: 0.2631 S23: -0.0056 REMARK 3 S31: -0.5570 S32: -0.2789 S33: 0.3651 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.802 REMARK 200 RESOLUTION RANGE LOW (A) : 44.216 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: IT WAS SOLVED BY MR ON A CRUDE MODEL FROM REMARK 200 EXPERIMENTAL PHASING EXPERIMENT (DATA NOT DEPOSITED) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS TRIS PROPANE PH 7.0-8.0, 0.1 REMARK 280 -0.2M SODIUM CITRATE TRIBASIC DIHYDRATE, 20-30% PEG 3350, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.41200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 213 REMARK 465 MET A 214 REMARK 465 SER A 215 REMARK 465 VAL A 216 REMARK 465 LYS A 217 REMARK 465 PRO A 218 REMARK 465 THR A 219 REMARK 465 ALA A 220 REMARK 465 PRO A 221 REMARK 465 GLN A 416 REMARK 465 GLU A 480 REMARK 465 ASP A 481 REMARK 465 GLY A 482 REMARK 465 GLN A 483 REMARK 465 PRO A 484 REMARK 465 ILE A 485 REMARK 465 ARG A 486 REMARK 465 GLU A 487 REMARK 465 LYS A 506 REMARK 465 LEU A 507 REMARK 465 LYS A 508 REMARK 465 GLU A 509 REMARK 465 ASN A 510 REMARK 465 ASN A 695 REMARK 465 ASN A 696 REMARK 465 SER A 697 REMARK 465 SER A 698 REMARK 465 GLY A 699 REMARK 465 ASN A 700 REMARK 465 ALA A 758 REMARK 465 LYS A 759 REMARK 465 HIS A 797 REMARK 465 SER A 798 REMARK 465 PRO A 799 REMARK 465 GLU A 800 REMARK 465 ALA A 801 REMARK 465 PHE A 802 REMARK 465 LYS A 803 REMARK 465 GLN A 804 REMARK 465 ILE A 805 REMARK 465 LYS A 806 REMARK 465 LEU A 807 REMARK 465 ASN A 808 REMARK 465 ASP A 809 REMARK 465 LEU A 810 REMARK 465 SER A 811 REMARK 465 LYS A 812 REMARK 465 MET A 813 REMARK 465 SER A 814 REMARK 465 GLY A 815 REMARK 465 ARG A 816 REMARK 465 THR A 817 REMARK 465 SER A 849 REMARK 465 LYS A 850 REMARK 465 GLN A 851 REMARK 465 VAL A 852 REMARK 465 GLY A 853 REMARK 465 ARG A 854 REMARK 465 HIS A 855 REMARK 465 GLY A 856 REMARK 465 GLU A 857 REMARK 465 GLY A 858 REMARK 465 THR A 859 REMARK 465 GLU A 860 REMARK 465 SER A 861 REMARK 465 ASP A 902 REMARK 465 PHE A 903 REMARK 465 THR A 904 REMARK 465 PRO A 905 REMARK 465 ARG A 906 REMARK 465 HIS A 907 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 222 CG CD OE1 NE2 REMARK 470 ASP A 223 CG OD1 OD2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 LYS A 491 CG CD CE NZ REMARK 470 GLN A 493 CG CD OE1 NE2 REMARK 470 LYS A 499 CG CD CE NZ REMARK 470 TYR A 505 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 512 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 526 CG CD OE1 NE2 REMARK 470 ASN A 527 CG OD1 ND2 REMARK 470 LYS A 577 CG CD CE NZ REMARK 470 GLN A 588 CG CD OE1 NE2 REMARK 470 LYS A 591 CG CD CE NZ REMARK 470 GLU A 632 CG CD OE1 OE2 REMARK 470 GLN A 634 CG CD OE1 NE2 REMARK 470 GLU A 644 CG CD OE1 OE2 REMARK 470 ARG A 665 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 671 CG CD OE1 OE2 REMARK 470 LYS A 683 CG CD CE NZ REMARK 470 TYR A 687 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 694 CG1 CG2 CD1 REMARK 470 ILE A 701 CG1 CG2 CD1 REMARK 470 LYS A 705 CG CD CE NZ REMARK 470 GLN A 727 CG CD OE1 NE2 REMARK 470 LYS A 731 CG CD CE NZ REMARK 470 LYS A 750 CG CD CE NZ REMARK 470 LYS A 776 CG CD CE NZ REMARK 470 ARG A 792 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 824 CG CD OE1 OE2 REMARK 470 LYS A 826 CG CD CE NZ REMARK 470 HIS A 848 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 863 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 869 CG CD OE1 OE2 REMARK 470 LYS A 883 CG CD CE NZ REMARK 470 LYS A 886 CG CD CE NZ REMARK 470 LYS A 899 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 657 HZ3 LYS A 704 1.56 REMARK 500 HD1 HIS A 281 OD2 ASP A 410 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 545 N ASN A 627 2345 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 224 42.56 -147.46 REMARK 500 TYR A 251 -77.05 -130.34 REMARK 500 PHE A 309 -176.11 -68.62 REMARK 500 LYS A 375 -71.27 -105.35 REMARK 500 SER A 396 82.98 -66.15 REMARK 500 SER A 471 81.75 -66.48 REMARK 500 GLN A 493 -172.98 -64.64 REMARK 500 GLU A 495 -2.18 68.75 REMARK 500 LYS A 499 -81.79 -122.01 REMARK 500 VAL A 500 66.65 -116.65 REMARK 500 THR A 528 -36.94 -140.35 REMARK 500 ALA A 586 -76.68 -63.85 REMARK 500 HIS A 620 -168.71 -128.35 REMARK 500 ASN A 627 50.71 31.07 REMARK 500 GLU A 667 53.17 -104.98 REMARK 500 ASN A 714 -159.02 -97.57 REMARK 500 ASP A 715 82.06 52.69 REMARK 500 TYR A 718 -61.52 -97.63 REMARK 500 ASP A 730 65.36 -116.99 REMARK 500 LYS A 883 62.48 -113.39 REMARK 500 SER A 900 130.37 -174.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1004 DBREF 6G0C A 213 907 UNP Q5ZTK4 SDEA_LEGPH 213 907 SEQRES 1 A 695 GLU MET SER VAL LYS PRO THR ALA PRO GLN ASP LYS SER SEQRES 2 A 695 VAL PRO VAL TRP ASN GLY PHE SER LEU TYR THR ASP ASP SEQRES 3 A 695 THR VAL LYS ALA ALA ALA GLN TYR ALA TYR ASP ASN TYR SEQRES 4 A 695 LEU GLY LYS PRO TYR THR GLY SER VAL GLU SER ALA PRO SEQRES 5 A 695 ALA ASN PHE GLY GLY ARG MET VAL TYR ARG GLN HIS HIS SEQRES 6 A 695 GLY LEU SER HIS THR LEU ARG THR MET ALA TYR ALA GLU SEQRES 7 A 695 LEU ILE VAL GLU GLU ALA ARG LYS ALA LYS LEU ARG GLY SEQRES 8 A 695 GLU THR LEU GLY LYS PHE LYS ASP GLY ARG THR ILE ALA SEQRES 9 A 695 ASP VAL THR PRO GLN GLU LEU LYS LYS ILE MET ILE ALA SEQRES 10 A 695 GLN ALA PHE PHE VAL ALA GLY ARG ASP ASP GLU ALA SER SEQRES 11 A 695 ASP ALA LYS ASN TYR GLN LYS TYR HIS GLU GLN SER ARG SEQRES 12 A 695 ASP ALA PHE LEU LYS TYR VAL LYS ASP ASN GLU SER THR SEQRES 13 A 695 LEU ILE PRO ASP VAL PHE LYS ASP GLN GLU ASP VAL ASN SEQRES 14 A 695 PHE TYR ALA ARG VAL ILE GLU ASP LYS SER HIS ASP TRP SEQRES 15 A 695 GLU SER THR PRO ALA HIS VAL LEU ILE ASN GLN GLY HIS SEQRES 16 A 695 MET VAL ASP LEU VAL ARG VAL LYS GLN PRO PRO GLU SER SEQRES 17 A 695 PHE LEU GLN ARG TYR PHE SER SER MET GLN ARG TRP ILE SEQRES 18 A 695 GLY SER GLN ALA THR GLU ALA VAL PHE GLY ILE GLN ARG SEQRES 19 A 695 GLN PHE PHE HIS ALA THR TYR GLU VAL VAL ALA GLY PHE SEQRES 20 A 695 ASP SER ASP ASN LYS GLU PRO HIS LEU VAL VAL SER GLY SEQRES 21 A 695 LEU GLY ARG TYR VAL ILE GLY GLU ASP GLY GLN PRO ILE SEQRES 22 A 695 ARG GLU ALA PRO LYS LYS GLY GLN LYS GLU GLY ASP LEU SEQRES 23 A 695 LYS VAL PHE PRO GLN THR TYR LYS LEU LYS GLU ASN GLU SEQRES 24 A 695 ARG LEU MET ARG VAL ASP GLU PHE LEU LYS LEU PRO GLU SEQRES 25 A 695 ILE GLN ASN THR PHE PRO GLY SER GLY LYS HIS LEU GLN SEQRES 26 A 695 GLY GLY MET PRO GLY MET ASN GLU MET ASP TYR TRP ASN SEQRES 27 A 695 ARG LEU ASN SER LEU ASN ARG ALA ARG CYS GLU ASN ASP SEQRES 28 A 695 VAL ASP PHE CYS LEU LYS GLN LEU GLN THR ALA HIS ASP SEQRES 29 A 695 LYS ALA LYS ILE GLU PRO ILE LYS GLN ALA PHE GLN SER SEQRES 30 A 695 SER LYS GLY LYS GLU ARG ARG GLN PRO ASN VAL ASP GLU SEQRES 31 A 695 ILE ALA ALA ALA ARG ILE ILE GLN GLN ILE LEU ALA ASN SEQRES 32 A 695 PRO ASP CYS ILE HIS ASP ASP HIS VAL LEU ILE ASN GLY SEQRES 33 A 695 GLN LYS LEU GLU GLN GLN PHE PHE ARG ASP LEU LEU ALA SEQRES 34 A 695 LYS CYS GLU MET ALA VAL VAL GLY SER LEU LEU ASN ASP SEQRES 35 A 695 THR ASP ILE GLY ASN ILE ASP THR LEU MET ARG HIS GLU SEQRES 36 A 695 LYS ASP THR GLU PHE HIS SER THR ASN PRO GLU ALA VAL SEQRES 37 A 695 PRO VAL LYS ILE GLY GLU TYR TRP ILE ASN ASP GLN ARG SEQRES 38 A 695 ILE ASN ASN SER SER GLY ASN ILE THR GLN LYS LYS HIS SEQRES 39 A 695 ASP LEU ILE PHE LEU MET GLN ASN ASP ALA TRP TYR PHE SEQRES 40 A 695 SER ARG VAL ASN ALA ILE ALA GLN ASN ARG ASP LYS GLY SEQRES 41 A 695 SER THR PHE LYS GLU VAL LEU ILE THR THR LEU MET THR SEQRES 42 A 695 PRO LEU THR SER LYS ALA LEU VAL ASP THR SER GLN ALA SEQRES 43 A 695 LYS PRO PRO THR ARG LEU PHE ARG GLY LEU ASN LEU SER SEQRES 44 A 695 GLU GLU PHE THR LYS GLY LEU ILE ASP GLN ALA ASN ALA SEQRES 45 A 695 MET ILE ALA ASN THR THR GLU ARG LEU PHE THR ASP HIS SEQRES 46 A 695 SER PRO GLU ALA PHE LYS GLN ILE LYS LEU ASN ASP LEU SEQRES 47 A 695 SER LYS MET SER GLY ARG THR ASN ALA SER THR THR THR SEQRES 48 A 695 GLU ILE LYS LEU VAL LYS GLU THR TRP ASP SER ASN VAL SEQRES 49 A 695 ILE PHE GLU MET LEU ASP PRO ASP GLY LEU LEU HIS SER SEQRES 50 A 695 LYS GLN VAL GLY ARG HIS GLY GLU GLY THR GLU SER GLU SEQRES 51 A 695 PHE SER VAL TYR LEU PRO GLU ASP VAL ALA LEU VAL PRO SEQRES 52 A 695 VAL LYS VAL THR LEU ASP GLY LYS THR GLN LYS GLY GLU SEQRES 53 A 695 ASN ARG TYR VAL PHE THR PHE VAL ALA VAL LYS SER PRO SEQRES 54 A 695 ASP PHE THR PRO ARG HIS HET 1PS A1001 24 HET EDO A1002 10 HET EDO A1003 10 HET EDO A1004 10 HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETNAM EDO 1,2-ETHANEDIOL HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS HETSYN EDO ETHYLENE GLYCOL FORMUL 2 1PS C8 H11 N O3 S FORMUL 3 EDO 3(C2 H6 O2) HELIX 1 AA1 ASP A 237 TYR A 251 1 15 HELIX 2 AA2 GLY A 278 GLY A 303 1 26 HELIX 3 AA3 THR A 314 VAL A 318 5 5 HELIX 4 AA4 THR A 319 PHE A 332 1 14 HELIX 5 AA5 ASP A 343 ASN A 365 1 23 HELIX 6 AA6 ASP A 376 ASP A 389 1 14 HELIX 7 AA7 LYS A 390 TRP A 394 5 5 HELIX 8 AA8 THR A 397 VAL A 409 1 13 HELIX 9 AA9 ASP A 410 VAL A 414 5 5 HELIX 10 AB1 PRO A 418 THR A 452 1 35 HELIX 11 AB2 ARG A 515 LEU A 522 1 8 HELIX 12 AB3 LEU A 522 ASN A 527 1 6 HELIX 13 AB4 ASN A 544 ASN A 553 1 10 HELIX 14 AB5 SER A 554 ASP A 563 1 10 HELIX 15 AB6 ASP A 563 PHE A 587 1 25 HELIX 16 AB7 ASN A 599 ASN A 615 1 17 HELIX 17 AB8 PRO A 616 ILE A 619 5 4 HELIX 18 AB9 GLU A 632 CYS A 643 1 12 HELIX 19 AC1 GLU A 644 LEU A 651 1 8 HELIX 20 AC2 ASN A 653 GLU A 667 1 15 HELIX 21 AC3 ILE A 684 GLN A 692 1 9 HELIX 22 AC4 THR A 702 ASN A 714 1 13 HELIX 23 AC5 ASP A 715 GLN A 727 1 13 HELIX 24 AC6 THR A 734 GLN A 757 1 24 HELIX 25 AC7 SER A 771 ASN A 788 1 18 HELIX 26 AC8 GLU A 824 GLU A 830 1 7 SHEET 1 AA1 2 ALA A 265 PHE A 267 0 SHEET 2 AA1 2 ARG A 270 VAL A 272 -1 O ARG A 270 N PHE A 267 SHEET 1 AA2 2 LEU A 468 VAL A 469 0 SHEET 2 AA2 2 GLY A 474 ARG A 475 -1 O GLY A 474 N VAL A 469 SHEET 1 AA3 2 VAL A 624 ILE A 626 0 SHEET 2 AA3 2 GLN A 629 LEU A 631 -1 O LEU A 631 N VAL A 624 SHEET 1 AA4 2 GLU A 671 PHE A 672 0 SHEET 2 AA4 2 VAL A 682 LYS A 683 -1 O VAL A 682 N PHE A 672 SHEET 1 AA5 5 THR A 821 THR A 822 0 SHEET 2 AA5 5 ARG A 763 LEU A 768 -1 N PHE A 765 O THR A 822 SHEET 3 AA5 5 VAL A 836 LEU A 841 -1 O VAL A 836 N LEU A 768 SHEET 4 AA5 5 ARG A 890 LYS A 899 1 O PHE A 893 N ILE A 837 SHEET 5 AA5 5 VAL A 871 ASP A 881 -1 N ASP A 881 O ARG A 890 SITE 1 AC1 5 ASP A 389 TRP A 394 ASN A 404 GLN A 405 SITE 2 AC1 5 TRP A 432 SITE 1 AC2 2 GLN A 447 HIS A 450 SITE 1 AC3 2 TYR A 453 ARG A 551 SITE 1 AC4 4 PHE A 232 SER A 233 THR A 236 ASP A 237 CRYST1 70.721 80.824 86.518 90.00 110.57 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014140 0.000000 0.005306 0.00000 SCALE2 0.000000 0.012373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012345 0.00000