HEADER RNA BINDING PROTEIN 20-MAR-18 6G0Z TITLE CRYSTAL STRUCTURE OF GDP BOUND RBGA FROM S. AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME BIOGENESIS GTPASE A; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN USA300); SOURCE 3 ORGANISM_TAXID: 367830; SOURCE 4 STRAIN: USA300; SOURCE 5 GENE: SAUSA300_1136; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CPGTPASE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PAUSCH,G.BANGE REVDAT 3 17-JAN-24 6G0Z 1 REMARK REVDAT 2 02-JAN-19 6G0Z 1 JRNL REVDAT 1 07-NOV-18 6G0Z 0 JRNL AUTH P.PAUSCH,W.STEINCHEN,M.WIELAND,T.KLAUS,S.A.FREIBERT, JRNL AUTH 2 F.ALTEGOER,D.N.WILSON,G.BANGE JRNL TITL STRUCTURAL BASIS FOR (P)PPGPP-MEDIATED INHIBITION OF THE JRNL TITL 2 GTPASE RBGA. JRNL REF J. BIOL. CHEM. V. 293 19699 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30366986 JRNL DOI 10.1074/JBC.RA118.003070 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 73381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 3600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6611 - 6.3648 0.99 2690 122 0.1549 0.1585 REMARK 3 2 6.3648 - 5.0536 1.00 2688 140 0.1746 0.1864 REMARK 3 3 5.0536 - 4.4153 0.99 2657 150 0.1423 0.1597 REMARK 3 4 4.4153 - 4.0118 1.00 2689 132 0.1433 0.1736 REMARK 3 5 4.0118 - 3.7244 1.00 2692 123 0.1547 0.2232 REMARK 3 6 3.7244 - 3.5049 1.00 2719 122 0.1697 0.2283 REMARK 3 7 3.5049 - 3.3294 1.00 2694 142 0.1803 0.2245 REMARK 3 8 3.3294 - 3.1845 1.00 2721 91 0.1929 0.2237 REMARK 3 9 3.1845 - 3.0619 1.00 2685 135 0.1953 0.2096 REMARK 3 10 3.0619 - 2.9563 1.00 2714 139 0.1833 0.2726 REMARK 3 11 2.9563 - 2.8638 1.00 2629 143 0.1906 0.2697 REMARK 3 12 2.8638 - 2.7820 1.00 2683 147 0.1804 0.2321 REMARK 3 13 2.7820 - 2.7088 1.00 2682 163 0.1901 0.2169 REMARK 3 14 2.7088 - 2.6427 1.00 2627 154 0.2016 0.2617 REMARK 3 15 2.6427 - 2.5826 1.00 2693 154 0.2017 0.2577 REMARK 3 16 2.5826 - 2.5276 0.99 2695 141 0.2033 0.2560 REMARK 3 17 2.5276 - 2.4771 1.00 2654 144 0.2065 0.2146 REMARK 3 18 2.4771 - 2.4303 1.00 2696 140 0.2124 0.2423 REMARK 3 19 2.4303 - 2.3869 1.00 2672 144 0.2272 0.2631 REMARK 3 20 2.3869 - 2.3465 1.00 2701 136 0.2338 0.2809 REMARK 3 21 2.3465 - 2.3086 1.00 2644 156 0.2367 0.2420 REMARK 3 22 2.3086 - 2.2731 1.00 2688 131 0.2414 0.3362 REMARK 3 23 2.2731 - 2.2397 1.00 2708 133 0.2433 0.2735 REMARK 3 24 2.2397 - 2.2081 1.00 2659 138 0.2613 0.2981 REMARK 3 25 2.2081 - 2.1783 1.00 2704 129 0.2673 0.2827 REMARK 3 26 2.1783 - 2.1500 1.00 2697 151 0.2843 0.3145 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4776 REMARK 3 ANGLE : 1.212 6441 REMARK 3 CHIRALITY : 0.052 711 REMARK 3 PLANARITY : 0.006 812 REMARK 3 DIHEDRAL : 14.191 1819 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 2:292) REMARK 3 ORIGIN FOR THE GROUP (A): -45.6589 33.5225 138.4104 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.1912 REMARK 3 T33: 0.1312 T12: -0.0050 REMARK 3 T13: -0.0318 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.3416 L22: 1.1861 REMARK 3 L33: 1.8137 L12: 0.8786 REMARK 3 L13: -1.4910 L23: -0.3897 REMARK 3 S TENSOR REMARK 3 S11: 0.2193 S12: -0.6337 S13: 0.0669 REMARK 3 S21: 0.0474 S22: -0.1921 S23: 0.0776 REMARK 3 S31: -0.0244 S32: 0.1554 S33: 0.0010 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 2:292) REMARK 3 ORIGIN FOR THE GROUP (A): -45.5613 73.1168 144.2118 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.1764 REMARK 3 T33: 0.1445 T12: -0.0247 REMARK 3 T13: -0.0319 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 3.9798 L22: 1.0615 REMARK 3 L33: 1.9928 L12: 0.7785 REMARK 3 L13: -1.8234 L23: -0.3215 REMARK 3 S TENSOR REMARK 3 S11: 0.2233 S12: -0.5286 S13: 0.0488 REMARK 3 S21: -0.0045 S22: -0.0976 S23: 0.0598 REMARK 3 S31: -0.0012 S32: 0.0890 S33: 0.0092 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73381 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PUJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M MES PH REMARK 280 6.0, 35% (V/V) MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.96600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.33350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.90600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.33350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.96600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.90600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 ALA B 146 REMARK 465 GLN B 147 REMARK 465 THR B 148 REMARK 465 ASN B 294 REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 ALA A 146 REMARK 465 GLN A 147 REMARK 465 THR A 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 540 O HOH B 549 1.82 REMARK 500 O HOH A 439 O HOH A 501 1.88 REMARK 500 O HOH A 529 O HOH A 533 1.92 REMARK 500 OD2 ASP A 240 O HOH A 401 1.95 REMARK 500 NZ LYS B 272 O HOH B 401 2.00 REMARK 500 OD2 ASP A 197 O HOH A 402 2.02 REMARK 500 N VAL B 2 O HOH B 402 2.04 REMARK 500 O HOH B 492 O HOH B 525 2.09 REMARK 500 O HOH A 424 O HOH A 465 2.12 REMARK 500 O HOH A 511 O HOH A 521 2.12 REMARK 500 ND2 ASN A 130 O HOH A 403 2.13 REMARK 500 OD1 ASN A 290 O HOH A 404 2.14 REMARK 500 O HOH B 479 O HOH B 536 2.14 REMARK 500 O HOH A 436 O HOH A 528 2.14 REMARK 500 O ILE A 145 O HOH A 405 2.16 REMARK 500 OH TYR A 81 O HOH A 406 2.17 REMARK 500 OE2 GLU A 111 O HOH A 407 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 524 O HOH A 519 4467 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 5 58.08 -92.40 REMARK 500 ASN B 92 28.09 84.02 REMARK 500 SER B 198 32.16 175.19 REMARK 500 ASP B 217 52.61 -152.14 REMARK 500 ASN B 253 40.26 -149.18 REMARK 500 ASN A 92 29.92 81.67 REMARK 500 LYS A 196 46.66 -101.57 REMARK 500 SER A 198 -154.87 -54.59 REMARK 500 ASP A 217 52.86 -150.47 REMARK 500 ASN A 253 36.54 -148.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 556 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 541 DISTANCE = 6.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 301 DBREF1 6G0Z B 2 294 UNP A0A0H2XK72_STAA3 DBREF2 6G0Z B A0A0H2XK72 2 294 DBREF1 6G0Z A 2 294 UNP A0A0H2XK72_STAA3 DBREF2 6G0Z A A0A0H2XK72 2 294 SEQADV 6G0Z MET B -6 UNP A0A0H2XK7 INITIATING METHIONINE SEQADV 6G0Z GLY B -5 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS B -4 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS B -3 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS B -2 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS B -1 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS B 0 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS B 1 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z MET A -6 UNP A0A0H2XK7 INITIATING METHIONINE SEQADV 6G0Z GLY A -5 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS A -4 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS A -3 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS A -2 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS A -1 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS A 0 UNP A0A0H2XK7 EXPRESSION TAG SEQADV 6G0Z HIS A 1 UNP A0A0H2XK7 EXPRESSION TAG SEQRES 1 B 301 MET GLY HIS HIS HIS HIS HIS HIS VAL ILE GLN TRP TYR SEQRES 2 B 301 PRO GLY HIS MET ALA LYS ALA LYS ARG GLU VAL SER GLU SEQRES 3 B 301 GLN LEU LYS LYS VAL ASP VAL VAL PHE GLU LEU VAL ASP SEQRES 4 B 301 ALA ARG ILE PRO TYR SER SER ARG ASN PRO MET ILE ASP SEQRES 5 B 301 GLU VAL ILE ASN GLN LYS PRO ARG VAL VAL ILE LEU ASN SEQRES 6 B 301 LYS LYS ASP MET SER ASN LEU ASN GLU MET SER LYS TRP SEQRES 7 B 301 GLU GLN PHE PHE ILE ASP LYS GLY TYR TYR PRO VAL SER SEQRES 8 B 301 VAL ASP ALA LYS HIS GLY LYS ASN LEU LYS LYS VAL GLU SEQRES 9 B 301 ALA ALA ALA ILE LYS ALA THR ALA GLU LYS PHE GLU ARG SEQRES 10 B 301 GLU LYS ALA LYS GLY LEU LYS PRO ARG ALA ILE ARG ALA SEQRES 11 B 301 MET ILE VAL GLY ILE PRO ASN VAL GLY LYS SER THR LEU SEQRES 12 B 301 ILE ASN LYS LEU ALA LYS ARG SER ILE ALA GLN THR GLY SEQRES 13 B 301 ASN LYS PRO GLY VAL THR LYS GLN GLN GLN TRP ILE LYS SEQRES 14 B 301 VAL GLY ASN ALA LEU GLN LEU LEU ASP THR PRO GLY ILE SEQRES 15 B 301 LEU TRP PRO LYS PHE GLU ASP GLU GLU VAL GLY LYS LYS SEQRES 16 B 301 LEU SER LEU THR GLY ALA ILE LYS ASP SER ILE VAL HIS SEQRES 17 B 301 LEU ASP GLU VAL ALA ILE TYR GLY LEU ASN PHE LEU ILE SEQRES 18 B 301 GLN ASN ASP LEU ALA ARG LEU LYS SER HIS TYR ASN ILE SEQRES 19 B 301 GLU VAL PRO GLU ASP ALA GLU ILE ILE ALA TRP PHE ASP SEQRES 20 B 301 ALA ILE GLY LYS LYS ARG GLY LEU ILE ARG ARG GLY ASN SEQRES 21 B 301 GLU ILE ASP TYR GLU ALA VAL ILE GLU LEU ILE ILE TYR SEQRES 22 B 301 ASP ILE ARG ASN ALA LYS ILE GLY ASN TYR CYS PHE ASP SEQRES 23 B 301 ILE PHE LYS ASP MET THR GLU GLU LEU ALA ASN ASP ALA SEQRES 24 B 301 ASN ASN SEQRES 1 A 301 MET GLY HIS HIS HIS HIS HIS HIS VAL ILE GLN TRP TYR SEQRES 2 A 301 PRO GLY HIS MET ALA LYS ALA LYS ARG GLU VAL SER GLU SEQRES 3 A 301 GLN LEU LYS LYS VAL ASP VAL VAL PHE GLU LEU VAL ASP SEQRES 4 A 301 ALA ARG ILE PRO TYR SER SER ARG ASN PRO MET ILE ASP SEQRES 5 A 301 GLU VAL ILE ASN GLN LYS PRO ARG VAL VAL ILE LEU ASN SEQRES 6 A 301 LYS LYS ASP MET SER ASN LEU ASN GLU MET SER LYS TRP SEQRES 7 A 301 GLU GLN PHE PHE ILE ASP LYS GLY TYR TYR PRO VAL SER SEQRES 8 A 301 VAL ASP ALA LYS HIS GLY LYS ASN LEU LYS LYS VAL GLU SEQRES 9 A 301 ALA ALA ALA ILE LYS ALA THR ALA GLU LYS PHE GLU ARG SEQRES 10 A 301 GLU LYS ALA LYS GLY LEU LYS PRO ARG ALA ILE ARG ALA SEQRES 11 A 301 MET ILE VAL GLY ILE PRO ASN VAL GLY LYS SER THR LEU SEQRES 12 A 301 ILE ASN LYS LEU ALA LYS ARG SER ILE ALA GLN THR GLY SEQRES 13 A 301 ASN LYS PRO GLY VAL THR LYS GLN GLN GLN TRP ILE LYS SEQRES 14 A 301 VAL GLY ASN ALA LEU GLN LEU LEU ASP THR PRO GLY ILE SEQRES 15 A 301 LEU TRP PRO LYS PHE GLU ASP GLU GLU VAL GLY LYS LYS SEQRES 16 A 301 LEU SER LEU THR GLY ALA ILE LYS ASP SER ILE VAL HIS SEQRES 17 A 301 LEU ASP GLU VAL ALA ILE TYR GLY LEU ASN PHE LEU ILE SEQRES 18 A 301 GLN ASN ASP LEU ALA ARG LEU LYS SER HIS TYR ASN ILE SEQRES 19 A 301 GLU VAL PRO GLU ASP ALA GLU ILE ILE ALA TRP PHE ASP SEQRES 20 A 301 ALA ILE GLY LYS LYS ARG GLY LEU ILE ARG ARG GLY ASN SEQRES 21 A 301 GLU ILE ASP TYR GLU ALA VAL ILE GLU LEU ILE ILE TYR SEQRES 22 A 301 ASP ILE ARG ASN ALA LYS ILE GLY ASN TYR CYS PHE ASP SEQRES 23 A 301 ILE PHE LYS ASP MET THR GLU GLU LEU ALA ASN ASP ALA SEQRES 24 A 301 ASN ASN HET GDP B 301 28 HET GDP A 301 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 HOH *297(H2 O) HELIX 1 AA1 TYR B 6 LYS B 23 1 18 HELIX 2 AA2 MET B 43 ASN B 49 1 7 HELIX 3 AA3 LYS B 59 SER B 63 5 5 HELIX 4 AA4 ASN B 64 LYS B 78 1 15 HELIX 5 AA5 LEU B 93 THR B 104 1 12 HELIX 6 AA6 THR B 104 LYS B 114 1 11 HELIX 7 AA7 GLY B 132 LYS B 142 1 11 HELIX 8 AA8 ASP B 182 THR B 192 1 11 HELIX 9 AA9 HIS B 201 ASN B 226 1 26 HELIX 10 AB1 ILE B 235 GLY B 247 1 13 HELIX 11 AB2 ASP B 256 ASN B 270 1 15 HELIX 12 AB3 ILE B 280 ASP B 283 5 4 HELIX 13 AB4 MET B 284 ALA B 292 1 9 HELIX 14 AB5 TYR A 6 LYS A 23 1 18 HELIX 15 AB6 MET A 43 ASN A 49 1 7 HELIX 16 AB7 LYS A 59 SER A 63 5 5 HELIX 17 AB8 ASN A 64 LYS A 78 1 15 HELIX 18 AB9 LYS A 94 THR A 104 1 11 HELIX 19 AC1 THR A 104 LYS A 114 1 11 HELIX 20 AC2 GLY A 132 LYS A 142 1 11 HELIX 21 AC3 ASP A 182 THR A 192 1 11 HELIX 22 AC4 HIS A 201 ASN A 226 1 26 HELIX 23 AC5 ILE A 235 GLY A 247 1 13 HELIX 24 AC6 ASP A 256 ASN A 270 1 15 HELIX 25 AC7 ILE A 280 ASP A 283 5 4 HELIX 26 AC8 MET A 284 ASN A 293 1 10 SHEET 1 AA1 6 TYR B 81 SER B 84 0 SHEET 2 AA1 6 ARG B 53 ASN B 58 1 N LEU B 57 O VAL B 83 SHEET 3 AA1 6 VAL B 26 ASP B 32 1 N VAL B 31 O ILE B 56 SHEET 4 AA1 6 ILE B 121 GLY B 127 1 O MET B 124 N PHE B 28 SHEET 5 AA1 6 LEU B 167 LEU B 170 1 O GLN B 168 N ILE B 121 SHEET 6 AA1 6 TRP B 160 VAL B 163 -1 N VAL B 163 O LEU B 167 SHEET 1 AA2 5 TYR B 81 SER B 84 0 SHEET 2 AA2 5 ARG B 53 ASN B 58 1 N LEU B 57 O VAL B 83 SHEET 3 AA2 5 VAL B 26 ASP B 32 1 N VAL B 31 O ILE B 56 SHEET 4 AA2 5 ILE B 121 GLY B 127 1 O MET B 124 N PHE B 28 SHEET 5 AA2 5 GLY B 174 ILE B 175 1 O GLY B 174 N ILE B 125 SHEET 1 AA3 2 ILE B 249 ARG B 250 0 SHEET 2 AA3 2 GLU B 254 ILE B 255 -1 O GLU B 254 N ARG B 250 SHEET 1 AA4 6 TYR A 81 SER A 84 0 SHEET 2 AA4 6 ARG A 53 ASN A 58 1 N LEU A 57 O VAL A 83 SHEET 3 AA4 6 VAL A 26 ASP A 32 1 N VAL A 31 O ILE A 56 SHEET 4 AA4 6 ILE A 121 GLY A 127 1 O MET A 124 N PHE A 28 SHEET 5 AA4 6 LEU A 167 LEU A 170 1 O GLN A 168 N ILE A 121 SHEET 6 AA4 6 TRP A 160 VAL A 163 -1 N VAL A 163 O LEU A 167 SHEET 1 AA5 5 TYR A 81 SER A 84 0 SHEET 2 AA5 5 ARG A 53 ASN A 58 1 N LEU A 57 O VAL A 83 SHEET 3 AA5 5 VAL A 26 ASP A 32 1 N VAL A 31 O ILE A 56 SHEET 4 AA5 5 ILE A 121 GLY A 127 1 O MET A 124 N PHE A 28 SHEET 5 AA5 5 GLY A 174 ILE A 175 1 O GLY A 174 N ILE A 125 SHEET 1 AA6 2 ILE A 249 ARG A 250 0 SHEET 2 AA6 2 GLU A 254 ILE A 255 -1 O GLU A 254 N ARG A 250 SITE 1 AC1 17 ASN B 58 LYS B 59 ASP B 61 MET B 62 SITE 2 AC1 17 ASP B 86 ALA B 87 LYS B 88 ASN B 130 SITE 3 AC1 17 VAL B 131 GLY B 132 LYS B 133 SER B 134 SITE 4 AC1 17 THR B 135 HOH B 412 HOH B 431 HOH B 454 SITE 5 AC1 17 HOH B 508 SITE 1 AC2 15 ASN A 58 LYS A 59 ASP A 61 MET A 62 SITE 2 AC2 15 ASP A 86 ALA A 87 LYS A 88 ASN A 130 SITE 3 AC2 15 VAL A 131 GLY A 132 LYS A 133 SER A 134 SITE 4 AC2 15 THR A 135 HOH A 437 HOH A 446 CRYST1 71.932 77.812 124.667 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008021 0.00000