HEADER ANTIFUNGAL PROTEIN 20-MAR-18 6G11 TITLE COMPLEX OF RICE BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PROTEIN AVR-PIKE TITLE 2 WITH THE HMA DOMAIN OF PIKP-1 FROM RICE (ORYZA SATIVA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVR-PIK PROTEIN; COMPND 3 CHAIN: C, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RESISTANCE PROTEIN PIKP-1; COMPND 7 CHAIN: A, B, D, E; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNAPORTHE ORYZAE; SOURCE 3 ORGANISM_TAXID: 318829; SOURCE 4 GENE: AVR-PIK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH1; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 536056; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 9 ORGANISM_COMMON: JAPANESE RICE; SOURCE 10 ORGANISM_TAXID: 39947; SOURCE 11 GENE: PIKP-1; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH1; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 536056 KEYWDS PLANT NLR, FUNGAL EFFECTOR, PLANT IMMUNITY, COMPLEX, ANTIFUNGAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.C.DE LA CONCEPCION,M.FRANCESCHETTI,M.J.BANFIELD REVDAT 4 17-JAN-24 6G11 1 REMARK REVDAT 3 15-AUG-18 6G11 1 JRNL REVDAT 2 18-JUL-18 6G11 1 JRNL REVDAT 1 13-JUN-18 6G11 0 JRNL AUTH J.C.DE LA CONCEPCION,M.FRANCESCHETTI,A.MAQBOOL,H.SAITOH, JRNL AUTH 2 R.TERAUCHI,S.KAMOUN,M.J.BANFIELD JRNL TITL POLYMORPHIC RESIDUES IN RICE NLRS EXPAND BINDING AND JRNL TITL 2 RESPONSE TO EFFECTORS OF THE BLAST PATHOGEN. JRNL REF NAT PLANTS V. 4 576 2018 JRNL REFN ESSN 2055-0278 JRNL PMID 29988155 JRNL DOI 10.1038/S41477-018-0194-X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2178 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3145 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3436 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.96000 REMARK 3 B22 (A**2) : 4.84000 REMARK 3 B33 (A**2) : -1.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.276 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3535 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3507 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4761 ; 1.614 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8140 ; 0.893 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 6.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;34.236 ;24.815 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 663 ;14.204 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ; 9.889 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3842 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 654 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1816 ; 2.934 ; 3.329 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1815 ; 2.931 ; 3.327 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2254 ; 4.225 ; 4.949 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2255 ; 4.225 ; 4.951 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 3.713 ; 3.788 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1717 ; 3.707 ; 3.784 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2504 ; 5.667 ; 5.461 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3802 ; 7.758 ;39.015 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3762 ; 7.723 ;38.860 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 7 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 C 32 113 F 32 113 5202 0.06 0.05 REMARK 3 2 A 188 259 B 188 259 3632 0.13 0.05 REMARK 3 3 A 188 260 D 188 260 3866 0.07 0.05 REMARK 3 4 A 188 259 E 188 259 3610 0.13 0.05 REMARK 3 5 B 188 259 D 188 259 3708 0.12 0.05 REMARK 3 6 B 188 263 E 188 263 4142 0.06 0.05 REMARK 3 7 D 188 259 E 188 259 3634 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.5.328 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45720 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 5A6W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06M DIVALENTS (0.3M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE; 0.3M CALCIUM CHLORIDE DIHYDRATE); 0.1M REMARK 280 BUFFER SYSTEM 1 (1M IMIDAZOLE; MES MONOHYDRATE (ACID)) PH 6.5; REMARK 280 50% V/V PRECIPITANT MIX 4 (25%V/V MPD; 25%V/V PEG 1000; 25%V/V REMARK 280 PEG3350), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.59800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.81350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.08850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.81350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.59800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.08850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 21 REMARK 465 GLU C 22 REMARK 465 THR C 23 REMARK 465 GLY C 24 REMARK 465 ASN C 25 REMARK 465 LYS C 26 REMARK 465 TYR C 27 REMARK 465 ILE C 28 REMARK 465 GLU C 29 REMARK 465 LYS C 30 REMARK 465 ARG C 31 REMARK 465 GLY A 184 REMARK 465 PRO A 185 REMARK 465 GLY A 186 REMARK 465 LEU A 187 REMARK 465 GLU A 198 REMARK 465 GLY A 199 REMARK 465 ASN A 200 REMARK 465 ASN A 261 REMARK 465 LYS A 262 REMARK 465 ASP A 263 REMARK 465 GLY B 184 REMARK 465 PRO B 185 REMARK 465 GLY B 186 REMARK 465 LEU B 187 REMARK 465 GLU B 198 REMARK 465 GLY B 199 REMARK 465 ASN B 200 REMARK 465 MET F 21 REMARK 465 GLU F 22 REMARK 465 THR F 23 REMARK 465 GLY F 24 REMARK 465 ASN F 25 REMARK 465 LYS F 26 REMARK 465 TYR F 27 REMARK 465 ILE F 28 REMARK 465 GLU F 29 REMARK 465 LYS F 30 REMARK 465 ARG F 31 REMARK 465 GLY D 184 REMARK 465 PRO D 185 REMARK 465 GLY D 186 REMARK 465 LEU D 187 REMARK 465 GLU D 198 REMARK 465 GLY D 199 REMARK 465 ASN D 200 REMARK 465 ASN D 261 REMARK 465 LYS D 262 REMARK 465 ASP D 263 REMARK 465 GLY E 184 REMARK 465 PRO E 185 REMARK 465 GLY E 186 REMARK 465 LEU E 187 REMARK 465 GLU E 198 REMARK 465 GLY E 199 REMARK 465 ASN E 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 230 O HOH D 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 253 O HOH E 327 4545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 203 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP C 74 -159.02 -152.50 REMARK 500 VAL A 249 -53.97 -126.69 REMARK 500 VAL B 249 -54.75 -126.89 REMARK 500 TRP F 74 -156.94 -152.03 REMARK 500 VAL D 249 -53.50 -126.30 REMARK 500 VAL E 249 -54.15 -125.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 270 DISTANCE = 6.31 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FU9 RELATED DB: PDB REMARK 900 6FU9 CONTAINS PIKM-HMA DOMAIN IN COMPLEX WITH AVR-PIKD REMARK 900 RELATED ID: 6FUB RELATED DB: PDB REMARK 900 6FUB CONTAINS PIKM-HMA DOMAIN IN COMPLEX WITH AVR-PIKE REMARK 900 RELATED ID: 6FUD RELATED DB: PDB REMARK 900 6FUD CONTAINS PIKM-HMA DOMAIN IN COMPLEX WITH AVR-PIKA REMARK 900 RELATED ID: 6G10 RELATED DB: PDB REMARK 900 6G10 CONTAINS PIKP-HMA DOMAIN IN COMPLEX WITH AVR-PIKD DBREF 6G11 C 22 113 UNP C4B8C2 C4B8C2_MAGOR 22 113 DBREF 6G11 A 186 263 UNP E9KPB5 E9KPB5_ORYSJ 186 263 DBREF 6G11 B 186 263 UNP E9KPB5 E9KPB5_ORYSJ 186 263 DBREF 6G11 F 22 113 UNP C4B8C2 C4B8C2_MAGOR 22 113 DBREF 6G11 D 186 263 UNP E9KPB5 E9KPB5_ORYSJ 186 263 DBREF 6G11 E 186 263 UNP E9KPB5 E9KPB5_ORYSJ 186 263 SEQADV 6G11 MET C 21 UNP C4B8C2 INITIATING METHIONINE SEQADV 6G11 GLY A 184 UNP E9KPB5 EXPRESSION TAG SEQADV 6G11 PRO A 185 UNP E9KPB5 EXPRESSION TAG SEQADV 6G11 GLY B 184 UNP E9KPB5 EXPRESSION TAG SEQADV 6G11 PRO B 185 UNP E9KPB5 EXPRESSION TAG SEQADV 6G11 MET F 21 UNP C4B8C2 INITIATING METHIONINE SEQADV 6G11 GLY D 184 UNP E9KPB5 EXPRESSION TAG SEQADV 6G11 PRO D 185 UNP E9KPB5 EXPRESSION TAG SEQADV 6G11 GLY E 184 UNP E9KPB5 EXPRESSION TAG SEQADV 6G11 PRO E 185 UNP E9KPB5 EXPRESSION TAG SEQRES 1 C 93 MET GLU THR GLY ASN LYS TYR ILE GLU LYS ARG ALA ILE SEQRES 2 C 93 ASP LEU SER ARG GLU ARG ASP PRO ASN PHE PHE ASP ASN SEQRES 3 C 93 PRO GLY ILE PRO VAL PRO GLU CYS PHE TRP PHE MET PHE SEQRES 4 C 93 LYS ASN ASN VAL ARG GLN ASP ALA GLY THR CYS TYR SER SEQRES 5 C 93 SER TRP LYS MET ASP MET LYS VAL GLY PRO ASN TRP VAL SEQRES 6 C 93 HIS ILE LYS SER ASP ASP ASN CYS ASN LEU SER GLY ASP SEQRES 7 C 93 PHE PRO PRO GLY TRP ILE VAL LEU GLY LYS LYS ARG PRO SEQRES 8 C 93 GLY PHE SEQRES 1 A 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 A 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 A 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 A 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 A 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 A 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER GLN ALA ASN SEQRES 7 A 80 LYS ASP SEQRES 1 B 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 B 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 B 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 B 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 B 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 B 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER GLN ALA ASN SEQRES 7 B 80 LYS ASP SEQRES 1 F 93 MET GLU THR GLY ASN LYS TYR ILE GLU LYS ARG ALA ILE SEQRES 2 F 93 ASP LEU SER ARG GLU ARG ASP PRO ASN PHE PHE ASP ASN SEQRES 3 F 93 PRO GLY ILE PRO VAL PRO GLU CYS PHE TRP PHE MET PHE SEQRES 4 F 93 LYS ASN ASN VAL ARG GLN ASP ALA GLY THR CYS TYR SER SEQRES 5 F 93 SER TRP LYS MET ASP MET LYS VAL GLY PRO ASN TRP VAL SEQRES 6 F 93 HIS ILE LYS SER ASP ASP ASN CYS ASN LEU SER GLY ASP SEQRES 7 F 93 PHE PRO PRO GLY TRP ILE VAL LEU GLY LYS LYS ARG PRO SEQRES 8 F 93 GLY PHE SEQRES 1 D 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 D 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 D 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 D 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 D 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 D 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER GLN ALA ASN SEQRES 7 D 80 LYS ASP SEQRES 1 E 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 E 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 E 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 E 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 E 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 E 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER GLN ALA ASN SEQRES 7 E 80 LYS ASP FORMUL 7 HOH *227(H2 O) HELIX 1 AA1 ASP C 34 GLU C 38 5 5 HELIX 2 AA2 CYS A 202 SER A 212 1 11 HELIX 3 AA3 ASP A 237 VAL A 249 1 13 HELIX 4 AA4 CYS B 202 SER B 212 1 11 HELIX 5 AA5 ASP B 237 VAL B 249 1 13 HELIX 6 AA6 ASP F 34 GLU F 38 5 5 HELIX 7 AA7 CYS D 202 SER D 212 1 11 HELIX 8 AA8 ASP D 237 VAL D 249 1 13 HELIX 9 AA9 CYS E 202 SER E 212 1 11 HELIX 10 AB1 ASP E 237 VAL E 249 1 13 SHEET 1 AA1 3 VAL C 63 CYS C 70 0 SHEET 2 AA1 3 CYS C 54 LYS C 60 -1 N MET C 58 O GLN C 65 SHEET 3 AA1 3 TRP C 103 LYS C 109 -1 O LYS C 108 N PHE C 55 SHEET 1 AA211 LEU C 95 SER C 96 0 SHEET 2 AA211 ASN C 83 SER C 89 -1 N LYS C 88 O SER C 96 SHEET 3 AA211 TRP C 74 VAL C 80 -1 N MET C 76 O ILE C 87 SHEET 4 AA211 ALA B 252 SER B 258 -1 O LEU B 255 N LYS C 79 SHEET 5 AA211 GLN B 189 VAL B 195 -1 N VAL B 192 O LEU B 255 SHEET 6 AA211 LYS B 228 GLY B 233 -1 O VAL B 231 N ILE B 191 SHEET 7 AA211 VAL B 216 VAL B 222 -1 N ASP B 217 O VAL B 232 SHEET 8 AA211 VAL A 216 VAL A 222 -1 N ASP A 217 O LEU B 221 SHEET 9 AA211 LYS A 228 GLY A 233 -1 O VAL A 232 N ASP A 217 SHEET 10 AA211 GLN A 189 VAL A 195 -1 N GLN A 189 O GLY A 233 SHEET 11 AA211 ALA A 252 GLN A 259 -1 O LEU A 255 N VAL A 192 SHEET 1 AA3 3 VAL F 63 CYS F 70 0 SHEET 2 AA3 3 CYS F 54 LYS F 60 -1 N MET F 58 O GLN F 65 SHEET 3 AA3 3 TRP F 103 LYS F 109 -1 O LYS F 108 N PHE F 55 SHEET 1 AA411 LEU F 95 SER F 96 0 SHEET 2 AA411 ASN F 83 SER F 89 -1 N LYS F 88 O SER F 96 SHEET 3 AA411 TRP F 74 VAL F 80 -1 N VAL F 80 O ASN F 83 SHEET 4 AA411 ALA E 252 SER E 258 -1 O LEU E 255 N LYS F 79 SHEET 5 AA411 GLN E 189 VAL E 195 -1 N VAL E 192 O LEU E 255 SHEET 6 AA411 LYS E 228 GLY E 233 -1 O VAL E 231 N ILE E 191 SHEET 7 AA411 VAL E 216 VAL E 222 -1 N ASP E 217 O VAL E 232 SHEET 8 AA411 VAL D 216 VAL D 222 -1 N ASP D 217 O LEU E 221 SHEET 9 AA411 LYS D 228 GLY D 233 -1 O VAL D 232 N ASP D 217 SHEET 10 AA411 GLN D 189 VAL D 195 -1 N GLN D 189 O GLY D 233 SHEET 11 AA411 ALA D 252 GLN D 259 -1 O LEU D 255 N VAL D 192 SSBOND 1 CYS C 54 CYS C 93 1555 1555 2.09 SSBOND 2 CYS F 54 CYS F 93 1555 1555 2.09 CRYST1 67.196 80.177 105.627 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014882 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009467 0.00000