HEADER IMMUNE SYSTEM 21-MAR-18 6G1E TITLE BEAT FC WITH IMPROVED HETERODIMERIZATION (Q3A-D84.4Q) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN HEAVY CONSTANT GAMMA 1,IMMUNOGLOBULIN HEAVY COMPND 3 CONSTANT GAMMA 3; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: IG GAMMA-1 CHAIN C REGION,IG GAMMA-1 CHAIN C REGION EU,IG COMPND 6 GAMMA-1 CHAIN C REGION KOL,IG GAMMA-1 CHAIN C REGION NIE,HDC,HEAVY COMPND 7 CHAIN DISEASE PROTEIN,IG GAMMA-3 CHAIN C REGION; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN NIE; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1, IGHG3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY, TCR, BISPECIFIC, HETERODIMER, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.STUTZ,S.BLEIN REVDAT 4 17-JAN-24 6G1E 1 HETSYN LINK REVDAT 3 29-JUL-20 6G1E 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 03-JUN-20 6G1E 1 JRNL REVDAT 1 10-APR-19 6G1E 0 JRNL AUTH C.STUTZ,S.BLEIN JRNL TITL A SINGLE MUTATION INCREASES HEAVY CHAIN HETERODIMER ASSEMBLY JRNL TITL 2 OF BISPECIFIC ANTIBODIES BY INDUCING STRUCTURAL DISORDER IN JRNL TITL 3 ONE HOMODIMER SPECIES. JRNL REF J.BIOL.CHEM. 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32404368 JRNL DOI 10.1074/JBC.RA119.012335 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 220 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.25000 REMARK 3 B22 (A**2) : -1.70000 REMARK 3 B33 (A**2) : 3.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.268 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3695 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3302 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5056 ; 1.372 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7770 ; 0.855 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 9.593 ; 5.059 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;34.240 ;24.610 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;14.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.904 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 603 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3825 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 669 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1668 ; 0.851 ; 2.401 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1667 ; 0.851 ; 2.401 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2084 ; 1.406 ; 3.598 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2085 ; 1.405 ; 3.598 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2027 ; 1.312 ; 2.885 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2027 ; 1.312 ; 2.885 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2970 ; 1.953 ; 4.273 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3954 ; 8.592 ;32.599 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3859 ; 8.309 ;31.419 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 1011 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8860 5.4110 -24.2600 REMARK 3 T TENSOR REMARK 3 T11: 0.0375 T22: 0.0847 REMARK 3 T33: 0.1995 T12: 0.0281 REMARK 3 T13: 0.0810 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 1.8172 L22: 2.3430 REMARK 3 L33: 3.7316 L12: 0.3814 REMARK 3 L13: 0.7268 L23: -0.4063 REMARK 3 S TENSOR REMARK 3 S11: 0.0814 S12: -0.2488 S13: 0.0440 REMARK 3 S21: 0.2770 S22: 0.2666 S23: 0.6416 REMARK 3 S31: -0.1191 S32: -0.2805 S33: -0.3480 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 237 B 1011 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8470 -17.8720 -25.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.1753 REMARK 3 T33: 0.1685 T12: 0.0671 REMARK 3 T13: -0.0638 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 3.8127 L22: 3.1302 REMARK 3 L33: 4.2119 L12: 0.2836 REMARK 3 L13: -1.2611 L23: 1.3600 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: -0.7060 S13: -0.5788 REMARK 3 S21: 0.4901 S22: 0.2745 S23: -0.5115 REMARK 3 S31: 0.2501 S32: 0.4763 S33: -0.2027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200007238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 93.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5M3V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GROWN BY VAPOR DIFFUSION BY REMARK 280 MIXING 12.0 MG/ML PROTEIN IN 10 MM HEPES PH8.0, 100 MM NACL, 1 REMARK 280 MM EDTA, EQUALLY WITH 33.00 %(W/V) PEG 1500, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.82500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.51000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.82500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.51000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 221 REMARK 465 LYS A 222 REMARK 465 THR A 223 REMARK 465 HIS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 ALA A 234 REMARK 465 ALA A 235 REMARK 465 GLY A 236 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 ASP B 221 REMARK 465 LYS B 222 REMARK 465 THR B 223 REMARK 465 HIS B 224 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 ALA B 234 REMARK 465 ALA B 235 REMARK 465 GLY B 236 REMARK 465 SER B 444 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 465 LYS B 447 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 260 O2 GAL D 6 1.48 REMARK 500 OG1 THR A 260 O2 GAL C 6 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 434 13.83 55.50 REMARK 500 ASN B 389 -72.36 -70.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M3V RELATED DB: PDB REMARK 900 BEAT FC DBREF 6G1E A 221 230 UNP P01857 IGHG1_HUMAN 104 113 DBREF 6G1E A 231 447 UNP P01860 IGHG3_HUMAN 161 377 DBREF 6G1E B 221 447 UNP P0DOX5 IGG1_HUMAN 223 449 SEQADV 6G1E ALA A 234 UNP P01860 LEU 164 ENGINEERED MUTATION SEQADV 6G1E ALA A 235 UNP P01860 LEU 165 ENGINEERED MUTATION SEQADV 6G1E ALA A 347 UNP P01860 GLN 277 ENGINEERED MUTATION SEQADV 6G1E LYS A 364 UNP P01860 SER 294 ENGINEERED MUTATION SEQADV 6G1E VAL A 366 UNP P01860 THR 296 ENGINEERED MUTATION SEQADV 6G1E THR A 370 UNP P01860 LYS 300 ENGINEERED MUTATION SEQADV 6G1E TYR A 392 UNP P01860 ASN 322 ENGINEERED MUTATION SEQADV 6G1E SER A 405 UNP P01860 PHE 335 ENGINEERED MUTATION SEQADV 6G1E VAL A 407 UNP P01860 TYR 337 ENGINEERED MUTATION SEQADV 6G1E TRP A 409 UNP P01860 LYS 339 ENGINEERED MUTATION SEQADV 6G1E ASN A 411 UNP P01860 THR 341 ENGINEERED MUTATION SEQADV 6G1E HIS A 448 UNP P01860 EXPRESSION TAG SEQADV 6G1E HIS A 449 UNP P01860 EXPRESSION TAG SEQADV 6G1E HIS A 450 UNP P01860 EXPRESSION TAG SEQADV 6G1E HIS A 451 UNP P01860 EXPRESSION TAG SEQADV 6G1E HIS A 452 UNP P01860 EXPRESSION TAG SEQADV 6G1E HIS A 453 UNP P01860 EXPRESSION TAG SEQADV 6G1E ALA B 234 UNP P0DOX5 LEU 236 ENGINEERED MUTATION SEQADV 6G1E ALA B 235 UNP P0DOX5 LEU 237 ENGINEERED MUTATION SEQADV 6G1E GLU B 347 UNP P0DOX5 GLN 349 ENGINEERED MUTATION SEQADV 6G1E ALA B 349 UNP P0DOX5 TYR 351 ENGINEERED MUTATION SEQADV 6G1E PHE B 351 UNP P0DOX5 LEU 353 ENGINEERED MUTATION SEQADV 6G1E THR B 364 UNP P0DOX5 SER 366 ENGINEERED MUTATION SEQADV 6G1E VAL B 366 UNP P0DOX5 THR 368 ENGINEERED MUTATION SEQADV 6G1E THR B 370 UNP P0DOX5 LYS 372 ENGINEERED MUTATION SEQADV 6G1E ASP B 394 UNP P0DOX5 THR 396 ENGINEERED MUTATION SEQADV 6G1E LEU B 397 UNP P0DOX5 VAL 399 ENGINEERED MUTATION SEQADV 6G1E GLU B 399 UNP P0DOX5 ASP 401 ENGINEERED MUTATION SEQADV 6G1E GLN B 401 UNP P0DOX5 ASP 403 ENGINEERED MUTATION SEQADV 6G1E ALA B 405 UNP P0DOX5 PHE 407 ENGINEERED MUTATION SEQADV 6G1E SER B 407 UNP P0DOX5 TYR 409 ENGINEERED MUTATION SEQADV 6G1E ARG B 409 UNP P0DOX5 LYS 411 ENGINEERED MUTATION SEQADV 6G1E ARG B 411 UNP P0DOX5 THR 413 ENGINEERED MUTATION SEQRES 1 A 233 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 2 A 233 ALA ALA GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 3 A 233 PRO MLY ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 4 A 233 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 5 A 233 VAL GLN PHE LYS TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 6 A 233 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 7 A 233 THR PHE ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 8 A 233 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 9 A 233 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 10 A 233 LYS THR LYS GLY GLN PRO ARG GLU PRO ALA VAL TYR THR SEQRES 11 A 233 LEU PRO PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SEQRES 12 A 233 LYS LEU VAL CYS LEU VAL THR GLY PHE TYR PRO SER ASP SEQRES 13 A 233 ILE ALA VAL GLU TRP GLU SER SER GLY GLN PRO GLU ASN SEQRES 14 A 233 ASN TYR TYR THR THR PRO PRO MET LEU ASP SER ASP GLY SEQRES 15 A 233 SER PHE SER LEU VAL SER TRP LEU ASN VAL ASP LYS SER SEQRES 16 A 233 ARG TRP GLN GLN GLY ASN ILE PHE SER CYS SER VAL MET SEQRES 17 A 233 HIS GLU ALA LEU HIS ASN ARG PHE THR GLN LYS SER LEU SEQRES 18 A 233 SER LEU SER PRO GLY LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 227 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 2 B 227 ALA ALA GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 3 B 227 PRO MLY ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 4 B 227 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 5 B 227 VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 6 B 227 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 7 B 227 THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 8 B 227 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 9 B 227 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 10 B 227 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLU VAL ALA THR SEQRES 11 B 227 PHE PRO PRO SER ARG ASP GLU LEU THR LYS ASN GLN VAL SEQRES 12 B 227 THR LEU VAL CYS LEU VAL THR GLY PHE TYR PRO SER ASP SEQRES 13 B 227 ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN SEQRES 14 B 227 ASN TYR LYS THR ASP PRO PRO LEU LEU GLU SER GLN GLY SEQRES 15 B 227 SER PHE ALA LEU SER SER ARG LEU ARG VAL ASP LYS SER SEQRES 16 B 227 ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET SEQRES 17 B 227 HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SEQRES 18 B 227 SER LEU SER PRO GLY LYS MODRES 6G1E MLY A 248 LYS MODIFIED RESIDUE MODRES 6G1E MLY B 248 LYS MODIFIED RESIDUE HET MLY A 248 11 HET MLY B 248 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET MAN C 7 11 HET NAG C 8 14 HET FUL C 9 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET GAL D 6 11 HET MAN D 7 11 HET NAG D 8 14 HET FUL D 9 10 HETNAM MLY N-DIMETHYL-LYSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 1 MLY 2(C8 H18 N2 O2) FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUL 2(C6 H12 O5) FORMUL 5 HOH *319(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 GLU A 356 LYS A 360 5 5 HELIX 4 AA4 LYS A 414 GLY A 420 1 7 HELIX 5 AA5 LEU A 432 ASN A 434 5 3 HELIX 6 AA6 LYS B 246 MET B 252 1 7 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 ASP B 356 LYS B 360 5 5 HELIX 9 AA9 LYS B 414 GLN B 419 1 6 HELIX 10 AB1 LEU B 432 ASN B 434 5 3 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 4 PHE A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA2 4 PHE A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA2 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 GLN A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 SER A 324 -1 O LYS A 322 N LYS A 276 SHEET 4 AA3 4 ILE A 332 ILE A 336 -1 O ILE A 336 N TYR A 319 SHEET 1 AA4 4 ALA A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O PHE A 404 N PHE A 372 SHEET 4 AA4 4 TYR A 391 THR A 393 -1 N TYR A 392 O TRP A 409 SHEET 1 AA5 4 ALA A 347 LEU A 351 0 SHEET 2 AA5 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA5 4 PHE A 404 ASP A 413 -1 O PHE A 404 N PHE A 372 SHEET 4 AA5 4 MET A 397 LEU A 398 -1 N MET A 397 O SER A 405 SHEET 1 AA6 4 GLN A 386 GLU A 388 0 SHEET 2 AA6 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA6 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA6 4 PHE A 436 LEU A 441 -1 O THR A 437 N VAL A 427 SHEET 1 AA7 4 SER B 239 PHE B 243 0 SHEET 2 AA7 4 GLU B 258 VAL B 266 -1 O THR B 260 N PHE B 243 SHEET 3 AA7 4 THR B 299 THR B 307 -1 O VAL B 302 N VAL B 263 SHEET 4 AA7 4 LYS B 288 GLN B 295 -1 N GLU B 293 O ARG B 301 SHEET 1 AA8 4 VAL B 282 VAL B 284 0 SHEET 2 AA8 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA8 4 TYR B 319 SER B 324 -1 O LYS B 322 N ASN B 276 SHEET 4 AA8 4 ILE B 332 ILE B 336 -1 O ILE B 336 N TYR B 319 SHEET 1 AA9 4 GLU B 347 PHE B 351 0 SHEET 2 AA9 4 GLN B 362 PHE B 372 -1 O LEU B 368 N ALA B 349 SHEET 3 AA9 4 PHE B 404 ASP B 413 -1 O VAL B 412 N VAL B 363 SHEET 4 AA9 4 TYR B 391 THR B 393 -1 N LYS B 392 O ARG B 409 SHEET 1 AB1 4 GLU B 347 PHE B 351 0 SHEET 2 AB1 4 GLN B 362 PHE B 372 -1 O LEU B 368 N ALA B 349 SHEET 3 AB1 4 PHE B 404 ASP B 413 -1 O VAL B 412 N VAL B 363 SHEET 4 AB1 4 LEU B 397 LEU B 398 -1 N LEU B 397 O ALA B 405 SHEET 1 AB2 4 GLN B 386 PRO B 387 0 SHEET 2 AB2 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB2 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 AB2 4 TYR B 436 LEU B 441 -1 O THR B 437 N VAL B 427 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.03 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.04 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.04 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.03 LINK C PRO A 247 N MLY A 248 1555 1555 1.34 LINK C MLY A 248 N ASP A 249 1555 1555 1.33 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.44 LINK C PRO B 247 N MLY B 248 1555 1555 1.34 LINK C MLY B 248 N ASP B 249 1555 1555 1.33 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUL C 9 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.43 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.44 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.43 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.44 LINK O2 MAN C 7 C1 NAG C 8 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUL D 9 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.43 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.44 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 LINK O4 NAG D 5 C1 GAL D 6 1555 1555 1.44 LINK O2 MAN D 7 C1 NAG D 8 1555 1555 1.44 CISPEP 1 GLY A 237 PRO A 238 0 0.64 CISPEP 2 TYR A 373 PRO A 374 0 -3.39 CISPEP 3 TYR A 373 PRO A 374 0 -6.00 CISPEP 4 GLY B 237 PRO B 238 0 1.21 CISPEP 5 TYR B 373 PRO B 374 0 -0.65 CISPEP 6 TYR B 373 PRO B 374 0 -2.72 CRYST1 49.650 73.020 140.930 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020141 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007096 0.00000