HEADER OXIDOREDUCTASE 21-MAR-18 6G1H TITLE AMINE DEHYDROGENASE FROM PETROTOGA MOBILIS; OPEN FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PETROTOGA MOBILIS SJ95; SOURCE 3 ORGANISM_TAXID: 403833; SOURCE 4 GENE: PMOB_1166; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINE DEHYDROGENASE, REDUCTIVE AMINASE, NADH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.BELOTI,A.FRESE,O.MAYOL,C.VERGNE-VAXELAIRE,G.GROGAN REVDAT 1 27-MAR-19 6G1H 0 JRNL AUTH O.MAYOL,K.BASTARD,L.BELOTI,A.FRESE,J.P.TURKENBURG, JRNL AUTH 2 J.-L.PETIT,A.MARIAGE,A.DEBARD,V.PELLOUIN,A.PERRET, JRNL AUTH 3 V.DE BERARDINIS,A.ZAPARUCHA,G.GROGAN,C.VERGNE-VAXELAIRE JRNL TITL A FAMILY OF NATIVE AMINE DEHYDROGENASES FOR THE ASYMMETRIC JRNL TITL 2 REDUCTIVE AMINATION OF KETONES JRNL REF NAT CATAL 2019 JRNL REFN ESSN 2520-1158 JRNL DOI 10.1038/S41929-019-0249-Z REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 39218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2032 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.16000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : -3.76000 REMARK 3 B12 (A**2) : 0.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.054 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2737 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2616 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3727 ; 2.059 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6099 ; 1.089 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 6.204 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;47.763 ;25.825 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 476 ;12.200 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 6.719 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2976 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 477 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1382 ; 2.626 ; 2.797 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1381 ; 2.627 ; 2.796 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1726 ; 3.204 ; 4.174 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1727 ; 3.203 ; 4.175 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1355 ; 4.257 ; 3.237 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1355 ; 4.247 ; 3.237 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1995 ; 6.042 ; 4.681 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3092 ; 7.027 ;35.514 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3093 ; 7.028 ;35.529 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41623 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 71.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 23.60 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5 0.8M LI2SO4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.46967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 144.93933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.70450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 181.17417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.23483 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.46967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 144.93933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 181.17417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.70450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.23483 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.23483 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 337 REMARK 465 HIS A 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -1 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 18 CE NZ REMARK 470 LYS A 24 CE NZ REMARK 470 LYS A 27 CD CE NZ REMARK 470 LYS A 51 CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 ARG A 156 CD NE CZ NH1 NH2 REMARK 470 LYS A 209 CE NZ REMARK 470 LYS A 237 CD CE NZ REMARK 470 GLN A 284 CD OE1 NE2 REMARK 470 GLY A 292 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 164 OG SER A 166 2.16 REMARK 500 OE1 GLN A 155 O HOH A 501 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 183 CD GLU A 183 OE2 -0.067 REMARK 500 ASN A 294 C PRO A 296 N 0.115 REMARK 500 GLU A 316 CD GLU A 316 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 164 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 PRO A 330 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 51.54 -118.46 REMARK 500 THR A 76 -75.09 -122.39 REMARK 500 ASN A 94 32.55 70.35 REMARK 500 ASN A 135 103.74 -161.54 REMARK 500 PHE A 138 -75.98 -142.66 REMARK 500 ASP A 141 -81.03 -148.81 REMARK 500 ASN A 256 14.52 56.86 REMARK 500 PRO A 296 178.46 -57.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 DBREF 6G1H A 2 338 UNP A9BHL2 A9BHL2_PETMO 2 338 SEQADV 6G1H HIS A -6 UNP A9BHL2 EXPRESSION TAG SEQADV 6G1H HIS A -5 UNP A9BHL2 EXPRESSION TAG SEQADV 6G1H LEU A -4 UNP A9BHL2 EXPRESSION TAG SEQADV 6G1H VAL A -3 UNP A9BHL2 EXPRESSION TAG SEQADV 6G1H PRO A -2 UNP A9BHL2 EXPRESSION TAG SEQADV 6G1H ARG A -1 UNP A9BHL2 EXPRESSION TAG SEQADV 6G1H GLY A 0 UNP A9BHL2 EXPRESSION TAG SEQADV 6G1H SER A 1 UNP A9BHL2 EXPRESSION TAG SEQRES 1 A 345 HIS HIS LEU VAL PRO ARG GLY SER TYR LYS VAL GLY ILE SEQRES 2 A 345 TRP GLY PHE GLY ALA MET GLY SER GLY ILE ALA LYS ASN SEQRES 3 A 345 ILE LEU SER LYS LYS ASN LEU LYS LEU VAL GLY VAL HIS SEQRES 4 A 345 ASP PHE ARG GLU GLU TYR ILE GLU LYS ASP VAL GLY GLU SEQRES 5 A 345 LEU LEU GLY LEU GLY LYS ILE GLY ILE LYS VAL TYR PRO SEQRES 6 A 345 ASP PRO ILE THR MET VAL LYS GLN THR ASP PRO ASP LEU SEQRES 7 A 345 VAL VAL ILE ALA THR ASN SER PHE ILE SER VAL VAL LYS SEQRES 8 A 345 ASP GLN ILE ILE SER ILE LEU LYS GLU ASN LYS ASN VAL SEQRES 9 A 345 ILE THR ILE ALA GLU GLU MET ALA PHE PRO PHE SER LYS SEQRES 10 A 345 ASP PRO LYS ALA ALA ASN GLU ILE ASP THR VAL ALA LYS SEQRES 11 A 345 ASP HIS ASN VAL SER VAL LEU GLY THR GLY VAL ASN PRO SEQRES 12 A 345 GLY PHE VAL LEU ASP THR LEU ILE ILE THR LEU THR GLY SEQRES 13 A 345 ILE CYS LEU ASN VAL GLN ARG ILE LYS ALA ALA ARG ILE SEQRES 14 A 345 ASN ASP LEU SER PRO PHE GLY PRO THR VAL MET GLU THR SEQRES 15 A 345 GLN GLY VAL GLY THR THR PRO GLU GLU PHE LYS GLN GLY SEQRES 16 A 345 ILE LYS SER GLY LYS ILE VAL GLY HIS ILE GLY PHE GLU SEQRES 17 A 345 GLN SER ILE HIS MET ILE ALA LYS ALA LEU GLY TRP GLU SEQRES 18 A 345 ILE ASP ARG ILE GLU GLN LYS ARG GLU PRO ILE ILE SER SEQRES 19 A 345 ASN VAL MET ARG GLU THR LYS TYR VAL LYS VAL GLN PRO SEQRES 20 A 345 GLY MET VAL ALA GLY CYS ASN HIS THR ALA LYS ALA PHE SEQRES 21 A 345 TYR LYS ASN GLU LEU LEU ILE GLU LEU GLU HIS PRO GLN SEQRES 22 A 345 GLN VAL LEU PRO HIS LEU GLU ASN VAL GLN THR GLY ASP SEQRES 23 A 345 TYR ILE THR ILE GLN GLY ASP PRO ASP ILE SER MET GLY SEQRES 24 A 345 ILE ASN PRO GLU ILE PRO GLY GLY LYS GLY THR ILE ALA SEQRES 25 A 345 ILE ALA THR ASN MET ILE PRO SER VAL VAL GLU ALA ARG SEQRES 26 A 345 PRO GLY LEU LEU THR MET VAL ASP LEU PRO ILE PRO ARG SEQRES 27 A 345 ALA LEU LEU ALA GLU VAL HIS HET NAD A 401 44 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *304(H2 O) HELIX 1 AA1 GLY A 10 LYS A 23 1 14 HELIX 2 AA2 ASP A 42 LEU A 47 1 6 HELIX 3 AA3 ASP A 59 ASP A 68 1 10 HELIX 4 AA4 PHE A 79 LYS A 92 1 14 HELIX 5 AA5 ALA A 101 ALA A 105 5 5 HELIX 6 AA6 ASP A 111 HIS A 125 1 15 HELIX 7 AA7 ASP A 141 GLY A 149 1 9 HELIX 8 AA8 GLY A 169 GLN A 176 1 8 HELIX 9 AA9 THR A 181 GLY A 192 1 12 HELIX 10 AB1 GLY A 199 GLY A 212 1 14 HELIX 11 AB2 LEU A 269 ASN A 274 5 6 HELIX 12 AB3 PRO A 298 MET A 310 1 13 HELIX 13 AB4 MET A 310 GLU A 316 1 7 HELIX 14 AB5 THR A 323 LEU A 327 5 5 SHEET 1 AA1 7 VAL A 56 TYR A 57 0 SHEET 2 AA1 7 LEU A 26 HIS A 32 1 N VAL A 31 O TYR A 57 SHEET 3 AA1 7 TYR A 2 TRP A 7 1 N VAL A 4 O VAL A 29 SHEET 4 AA1 7 LEU A 71 ILE A 74 1 O VAL A 73 N TRP A 7 SHEET 5 AA1 7 ASN A 96 THR A 99 1 O ILE A 98 N ILE A 74 SHEET 6 AA1 7 SER A 128 GLY A 131 1 O SER A 128 N VAL A 97 SHEET 7 AA1 7 GLY A 320 LEU A 322 1 O LEU A 322 N VAL A 129 SHEET 1 AA2 6 ARG A 217 ILE A 226 0 SHEET 2 AA2 6 VAL A 243 TYR A 254 -1 O ASN A 247 N GLU A 223 SHEET 3 AA2 6 GLU A 257 GLN A 267 -1 O LEU A 259 N ALA A 252 SHEET 4 AA2 6 ASN A 153 ASP A 164 1 N ILE A 157 O LEU A 259 SHEET 5 AA2 6 GLY A 278 ASP A 286 -1 O THR A 282 N LYS A 158 SHEET 6 AA2 6 ILE A 289 ILE A 293 -1 O ILE A 289 N ILE A 283 SHEET 1 AA3 2 ARG A 231 GLU A 232 0 SHEET 2 AA3 2 LYS A 237 VAL A 238 -1 O VAL A 238 N ARG A 231 CISPEP 1 ASN A 135 PRO A 136 0 -2.02 CISPEP 2 ASP A 286 PRO A 287 0 -5.73 CISPEP 3 ASN A 294 PRO A 296 0 -17.73 SITE 1 AC1 35 TRP A 7 GLY A 8 PHE A 9 GLY A 10 SITE 2 AC1 35 ALA A 11 MET A 12 HIS A 32 ASP A 33 SITE 3 AC1 35 PHE A 34 ARG A 35 ALA A 75 THR A 76 SITE 4 AC1 35 ASN A 77 SER A 78 GLN A 86 ILE A 100 SITE 5 AC1 35 GLU A 102 THR A 132 VAL A 134 ASN A 135 SITE 6 AC1 35 PRO A 136 GLN A 187 THR A 303 HOH A 513 SITE 7 AC1 35 HOH A 526 HOH A 530 HOH A 532 HOH A 559 SITE 8 AC1 35 HOH A 562 HOH A 595 HOH A 600 HOH A 601 SITE 9 AC1 35 HOH A 606 HOH A 611 HOH A 653 SITE 1 AC2 5 ASN A 135 ARG A 161 HIS A 264 GLY A 299 SITE 2 AC2 5 HOH A 562 SITE 1 AC3 4 ILE A 162 VAL A 275 GLN A 276 HOH A 547 SITE 1 AC4 5 GLU A 223 PRO A 224 ILE A 225 ASN A 247 SITE 2 AC4 5 HOH A 618 CRYST1 82.038 82.038 217.409 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012189 0.007038 0.000000 0.00000 SCALE2 0.000000 0.014075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004600 0.00000