HEADER HYDROLASE 22-MAR-18 6G28 TITLE HUMAN [PROTEIN ADP-RIBOSYLARGENINE] HYDROLASE ARH1 IN COMPLEX WITH TITLE 2 ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: [PROTEIN ADP-RIBOSYLARGININE] HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADP-RIBOSYLARGININE HYDROLASE,ADP-RIBOSE-L-ARGININE CLEAVING COMPND 5 ENZYME; COMPND 6 EC: 3.2.2.19; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADPRH, ARH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADP-RIBOSYLATION, ADP-RIBOSE, ADPRH, ADP-RIBOSYLHYDROLASE, HYDROLASE, KEYWDS 2 ARH1 EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA REVDAT 4 17-JAN-24 6G28 1 HETSYN LINK REVDAT 3 02-JAN-19 6G28 1 JRNL REVDAT 2 05-DEC-18 6G28 1 JRNL REVDAT 1 28-NOV-18 6G28 0 JRNL AUTH J.G.M.RACK,A.ARIZA,B.S.DROWN,C.HENFREY,E.BARTLETT,T.SHIRAI, JRNL AUTH 2 P.J.HERGENROTHER,I.AHEL JRNL TITL (ADP-RIBOSYL)HYDROLASES: STRUCTURAL BASIS FOR DIFFERENTIAL JRNL TITL 2 SUBSTRATE RECOGNITION AND INHIBITION. JRNL REF CELL CHEM BIOL V. 25 1533 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 30472116 JRNL DOI 10.1016/J.CHEMBIOL.2018.11.001 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 98756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 362 REMARK 3 BIN FREE R VALUE : 0.1890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2794 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.158 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3072 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2652 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4178 ; 1.527 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6240 ; 1.118 ; 1.648 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 5.305 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;33.930 ;22.086 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;13.536 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.897 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3527 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 624 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1477 ; 0.573 ; 0.985 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1476 ; 0.564 ; 0.984 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1855 ; 0.911 ; 1.481 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1856 ; 0.914 ; 1.482 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1595 ; 0.973 ; 1.134 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1594 ; 0.971 ; 1.134 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2303 ; 1.513 ; 1.658 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3759 ; 3.083 ;12.426 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3672 ; 2.799 ;11.895 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 847 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1090 -1.0810 -11.4610 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.0173 REMARK 3 T33: 0.0318 T12: 0.0153 REMARK 3 T13: -0.0197 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.8079 L22: 1.9327 REMARK 3 L33: 0.9450 L12: 0.5213 REMARK 3 L13: 0.3422 L23: 0.6185 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.0184 S13: -0.1003 REMARK 3 S21: 0.1625 S22: 0.1113 S23: -0.2052 REMARK 3 S31: 0.0675 S32: 0.1119 S33: -0.1250 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9760 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103868 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 66.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HFW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MAGNESIUM FORMATE, 20 % (W/V) REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.05100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.71000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.34350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.71000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.05100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.34350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 224 O HOH A 505 2.00 REMARK 500 O HOH A 607 O HOH A 810 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 54 -167.04 -106.04 REMARK 500 GLU A 240 15.36 -142.09 REMARK 500 GLU A 240 18.24 -143.45 REMARK 500 PHE A 249 52.58 -148.49 REMARK 500 TYR A 328 -14.07 -147.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 52 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 54 OG REMARK 620 2 ASP A 55 OD1 88.4 REMARK 620 3 ASP A 56 OD1 79.2 89.9 REMARK 620 4 ASP A 304 OD2 81.9 165.1 99.4 REMARK 620 5 AR6 A 401 O2D 169.3 99.9 94.0 91.1 REMARK 620 6 HOH A 605 O 94.5 81.2 169.2 88.2 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 302 OD1 REMARK 620 2 ASP A 304 OD1 90.8 REMARK 620 3 SER A 305 OG 89.9 90.5 REMARK 620 4 AR6 A 401 O2D 165.6 103.5 88.7 REMARK 620 5 AR6 A 401 O3D 88.6 178.4 91.0 77.1 REMARK 620 6 HOH A 746 O 90.1 91.3 178.2 90.9 87.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 DBREF 6G28 A 1 357 UNP P54922 ADPRH_HUMAN 1 357 SEQADV 6G28 MET A -9 UNP P54922 INITIATING METHIONINE SEQADV 6G28 GLY A -8 UNP P54922 EXPRESSION TAG SEQADV 6G28 HIS A -7 UNP P54922 EXPRESSION TAG SEQADV 6G28 HIS A -6 UNP P54922 EXPRESSION TAG SEQADV 6G28 HIS A -5 UNP P54922 EXPRESSION TAG SEQADV 6G28 HIS A -4 UNP P54922 EXPRESSION TAG SEQADV 6G28 HIS A -3 UNP P54922 EXPRESSION TAG SEQADV 6G28 HIS A -2 UNP P54922 EXPRESSION TAG SEQADV 6G28 GLY A -1 UNP P54922 EXPRESSION TAG SEQADV 6G28 GLY A 0 UNP P54922 EXPRESSION TAG SEQRES 1 A 367 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY MET GLU LYS SEQRES 2 A 367 TYR VAL ALA ALA MET VAL LEU SER ALA ALA GLY ASP ALA SEQRES 3 A 367 LEU GLY TYR TYR ASN GLY LYS TRP GLU PHE LEU GLN ASP SEQRES 4 A 367 GLY GLU LYS ILE HIS ARG GLN LEU ALA GLN LEU GLY GLY SEQRES 5 A 367 LEU ASP ALA LEU ASP VAL GLY ARG TRP ARG VAL SER ASP SEQRES 6 A 367 ASP THR VAL MET HIS LEU ALA THR ALA GLU ALA LEU VAL SEQRES 7 A 367 GLU ALA GLY LYS ALA PRO LYS LEU THR GLN LEU TYR TYR SEQRES 8 A 367 LEU LEU ALA LYS HIS TYR GLN ASP CYS MET GLU ASP MET SEQRES 9 A 367 ASP GLY ARG ALA PRO GLY GLY ALA SER VAL HIS ASN ALA SEQRES 10 A 367 MET GLN LEU LYS PRO GLY LYS PRO ASN GLY TRP ARG ILE SEQRES 11 A 367 PRO PHE ASN SER HIS GLU GLY GLY CYS GLY ALA ALA MET SEQRES 12 A 367 ARG ALA MET CYS ILE GLY LEU ARG PHE PRO HIS HIS SER SEQRES 13 A 367 GLN LEU ASP THR LEU ILE GLN VAL SER ILE GLU SER GLY SEQRES 14 A 367 ARG MET THR HIS HIS HIS PRO THR GLY TYR LEU GLY ALA SEQRES 15 A 367 LEU ALA SER ALA LEU PHE THR ALA TYR ALA VAL ASN SER SEQRES 16 A 367 ARG PRO PRO LEU GLN TRP GLY LYS GLY LEU MET GLU LEU SEQRES 17 A 367 LEU PRO GLU ALA LYS LYS TYR ILE VAL GLN SER GLY TYR SEQRES 18 A 367 PHE VAL GLU GLU ASN LEU GLN HIS TRP SER TYR PHE GLN SEQRES 19 A 367 THR LYS TRP GLU ASN TYR LEU LYS LEU ARG GLY ILE LEU SEQRES 20 A 367 ASP GLY GLU SER ALA PRO THR PHE PRO GLU SER PHE GLY SEQRES 21 A 367 VAL LYS GLU ARG ASP GLN PHE TYR THR SER LEU SER TYR SEQRES 22 A 367 SER GLY TRP GLY GLY SER SER GLY HIS ASP ALA PRO MET SEQRES 23 A 367 ILE ALA TYR ASP ALA VAL LEU ALA ALA GLY ASP SER TRP SEQRES 24 A 367 LYS GLU LEU ALA HIS ARG ALA PHE PHE HIS GLY GLY ASP SEQRES 25 A 367 SER ASP SER THR ALA ALA ILE ALA GLY CYS TRP TRP GLY SEQRES 26 A 367 VAL MET TYR GLY PHE LYS GLY VAL SER PRO SER ASN TYR SEQRES 27 A 367 GLU LYS LEU GLU TYR ARG ASN ARG LEU GLU GLU THR ALA SEQRES 28 A 367 ARG ALA LEU TYR SER LEU GLY SER LYS GLU ASP THR VAL SEQRES 29 A 367 ILE SER LEU HET AR6 A 401 36 HET MG A 402 1 HET MG A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 AR6 C15 H23 N5 O14 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 CL 3(CL 1-) FORMUL 8 HOH *346(H2 O) HELIX 1 AA1 GLY A 0 TYR A 20 1 21 HELIX 2 AA2 GLY A 22 GLN A 28 1 7 HELIX 3 AA3 ASP A 29 LEU A 40 1 12 HELIX 4 AA4 GLY A 42 LEU A 46 5 5 HELIX 5 AA5 ASP A 47 TRP A 51 5 5 HELIX 6 AA6 SER A 54 GLY A 71 1 18 HELIX 7 AA7 LYS A 75 CYS A 90 1 16 HELIX 8 AA8 MET A 91 MET A 94 5 4 HELIX 9 AA9 GLY A 100 LEU A 110 1 11 HELIX 10 AB1 ALA A 131 ARG A 134 5 4 HELIX 11 AB2 ALA A 135 PHE A 142 1 8 HELIX 12 AB3 HIS A 144 SER A 146 5 3 HELIX 13 AB4 GLN A 147 MET A 161 1 15 HELIX 14 AB5 HIS A 165 ASN A 184 1 20 HELIX 15 AB6 PRO A 187 LEU A 189 5 3 HELIX 16 AB7 GLN A 190 GLY A 210 1 21 HELIX 17 AB8 PHE A 212 HIS A 219 1 8 HELIX 18 AB9 TRP A 220 GLY A 235 1 16 HELIX 19 AC1 GLY A 250 SER A 262 1 13 HELIX 20 AC2 HIS A 272 GLY A 286 1 15 HELIX 21 AC3 SER A 288 PHE A 297 1 10 HELIX 22 AC4 ASP A 302 GLY A 319 1 18 HELIX 23 AC5 SER A 324 TYR A 328 5 5 HELIX 24 AC6 TYR A 333 SER A 349 1 17 LINK OG SER A 54 MG MG A 402 1555 1555 2.23 LINK OD1 ASP A 55 MG MG A 402 1555 1555 2.08 LINK OD1 ASP A 56 MG MG A 402 1555 1555 2.00 LINK OD1 ASP A 302 MG MG A 403 1555 1555 2.03 LINK OD2 ASP A 304 MG MG A 402 1555 1555 2.03 LINK OD1 ASP A 304 MG MG A 403 1555 1555 2.04 LINK OG SER A 305 MG MG A 403 1555 1555 2.22 LINK O2D AR6 A 401 MG MG A 402 1555 1555 2.05 LINK O2D AR6 A 401 MG MG A 403 1555 1555 2.04 LINK O3D AR6 A 401 MG MG A 403 1555 1555 2.12 LINK MG MG A 402 O HOH A 605 1555 1555 2.09 LINK MG MG A 403 O HOH A 746 1555 1555 2.10 SITE 1 AC1 32 ASP A 55 ASP A 56 ALA A 98 GLY A 100 SITE 2 AC1 32 GLY A 101 ALA A 102 SER A 103 SER A 124 SITE 3 AC1 32 HIS A 125 GLY A 127 GLY A 128 CYS A 129 SITE 4 AC1 32 GLY A 130 HIS A 163 HIS A 165 THR A 167 SITE 5 AC1 32 TYR A 263 SER A 264 SER A 269 SER A 270 SITE 6 AC1 32 ASP A 302 ASP A 304 SER A 305 MG A 402 SITE 7 AC1 32 MG A 403 HOH A 533 HOH A 570 HOH A 599 SITE 8 AC1 32 HOH A 605 HOH A 694 HOH A 746 HOH A 758 SITE 1 AC2 7 SER A 54 ASP A 55 ASP A 56 ASP A 304 SITE 2 AC2 7 AR6 A 401 MG A 403 HOH A 605 SITE 1 AC3 6 ASP A 302 ASP A 304 SER A 305 AR6 A 401 SITE 2 AC3 6 MG A 402 HOH A 746 SITE 1 AC4 6 LEU A 37 GLY A 42 LEU A 43 HIS A 294 SITE 2 AC4 6 HOH A 790 HOH A 797 SITE 1 AC5 4 TYR A 333 ASN A 335 ARG A 336 CL A 406 SITE 1 AC6 4 ARG A 334 ASN A 335 CL A 405 HOH A 574 CRYST1 64.102 66.687 83.420 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011988 0.00000