HEADER ONCOPROTEIN 26-MAR-18 6G3T TITLE X-RAY STRUCTURE OF NSD3-PWWP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE NSD3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NUCLEAR SET DOMAIN-CONTAINING PROTEIN 3,PROTEIN WHISTLE, COMPND 5 WHSC1-LIKE 1 ISOFORM 9 WITH METHYLTRANSFERASE ACTIVITY TO LYSINE, COMPND 6 WOLF-HIRSCHHORN SYNDROME CANDIDATE 1-LIKE PROTEIN 1,WHSC1-LIKE COMPND 7 PROTEIN 1; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NSD3, WHSC1L1, DC28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, PWWP DOMAIN, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BOETTCHER,B.J.MUELLAUER,A.WEISS-PUXBAUM,A.ZOEPHEL REVDAT 3 17-JAN-24 6G3T 1 REMARK REVDAT 2 15-JAN-20 6G3T 1 JRNL REVDAT 1 26-JUN-19 6G3T 0 JRNL AUTH J.BOTTCHER,D.DILWORTH,U.REISER,R.A.NEUMULLER,M.SCHLEICHER, JRNL AUTH 2 M.PETRONCZKI,M.ZEEB,N.MISCHERIKOW,A.ALLALI-HASSANI, JRNL AUTH 3 M.M.SZEWCZYK,F.LI,S.KENNEDY,M.VEDADI,D.BARSYTE-LOVEJOY, JRNL AUTH 4 P.J.BROWN,K.V.M.HUBER,C.M.ROGERS,C.I.WELLS,O.FEDOROV, JRNL AUTH 5 K.RUMPEL,A.ZOEPHEL,M.MAYER,T.WUNBERG,D.BOSE,S.ZAHN,H.ARNHOF, JRNL AUTH 6 H.BERGER,C.REISER,A.HORMANN,T.KRAMMER,M.CORCOKOVIC,B.SHARPS, JRNL AUTH 7 S.WINKLER,D.HARING,X.L.COCKCROFT,J.E.FUCHS,B.MULLAUER, JRNL AUTH 8 A.WEISS-PUXBAUM,T.GERSTBERGER,G.BOEHMELT,C.R.VAKOC, JRNL AUTH 9 C.H.ARROWSMITH,M.PEARSON,D.B.MCCONNELL JRNL TITL FRAGMENT-BASED DISCOVERY OF A CHEMICAL PROBE FOR THE PWWP1 JRNL TITL 2 DOMAIN OF NSD3. JRNL REF NAT.CHEM.BIOL. V. 15 822 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 31285596 JRNL DOI 10.1038/S41589-019-0310-X REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2797 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2355 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2659 REMARK 3 BIN R VALUE (WORKING SET) : 0.2318 REMARK 3 BIN FREE R VALUE : 0.3047 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3898 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.16350 REMARK 3 B22 (A**2) : -22.45300 REMARK 3 B33 (A**2) : 10.28950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.22700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.420 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.516 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.298 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.537 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.305 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.866 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.805 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4057 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5476 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1448 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 673 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4057 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 478 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4263 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.69 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.84 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -1.0412 1.9810 -36.0194 REMARK 3 T TENSOR REMARK 3 T11: -0.1180 T22: -0.0821 REMARK 3 T33: -0.0791 T12: 0.0021 REMARK 3 T13: -0.0150 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.8030 L22: 2.2384 REMARK 3 L33: 1.8546 L12: 0.3975 REMARK 3 L13: 0.1310 L23: 0.4501 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.0634 S13: -0.0901 REMARK 3 S21: -0.0025 S22: 0.0368 S23: 0.0608 REMARK 3 S31: 0.0226 S32: 0.0580 S33: -0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -23.5937 13.9322 -34.4655 REMARK 3 T TENSOR REMARK 3 T11: -0.0988 T22: -0.0787 REMARK 3 T33: -0.1058 T12: -0.0051 REMARK 3 T13: -0.0192 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 3.2579 L22: 2.4829 REMARK 3 L33: 1.8816 L12: -1.1732 REMARK 3 L13: -0.6470 L23: 0.4413 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: -0.0629 S13: 0.1759 REMARK 3 S21: -0.0346 S22: -0.0092 S23: 0.0748 REMARK 3 S31: -0.1140 S32: 0.1343 S33: -0.0208 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -25.0654 6.1595 -1.4177 REMARK 3 T TENSOR REMARK 3 T11: -0.3107 T22: 0.2742 REMARK 3 T33: -0.3312 T12: 0.1020 REMARK 3 T13: -0.0270 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 4.9123 L22: 0.4792 REMARK 3 L33: 7.5072 L12: 0.3169 REMARK 3 L13: -0.0911 L23: -0.4425 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: 0.0075 S13: 0.0314 REMARK 3 S21: -0.0798 S22: -0.0342 S23: 0.0373 REMARK 3 S31: 0.0574 S32: -0.0141 S33: 0.0059 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -2.4422 8.6482 11.0882 REMARK 3 T TENSOR REMARK 3 T11: -0.3182 T22: 0.2943 REMARK 3 T33: -0.3350 T12: -0.0659 REMARK 3 T13: -0.0329 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 3.6265 L22: 0.6970 REMARK 3 L33: 8.5168 L12: 0.2909 REMARK 3 L13: 0.5216 L23: -0.6646 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: 0.0024 S13: -0.0970 REMARK 3 S21: 0.0193 S22: -0.0099 S23: -0.0126 REMARK 3 S31: -0.0164 S32: -0.0917 S33: -0.0212 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.528 REMARK 200 RESOLUTION RANGE LOW (A) : 29.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.342 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 6G3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.8, 28% PEG3350, 2% REMARK 280 PEG200, 1.5% 1,2-BUTANDIOL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.04550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 246 REMARK 465 GLU A 247 REMARK 465 ALA A 248 REMARK 465 PRO A 249 REMARK 465 VAL A 250 REMARK 465 GLN A 251 REMARK 465 PRO A 252 REMARK 465 ILE A 253 REMARK 465 LEU A 254 REMARK 465 SER A 255 REMARK 465 SER A 256 REMARK 465 VAL A 257 REMARK 465 PRO A 258 REMARK 465 THR A 259 REMARK 465 THR A 260 REMARK 465 GLU A 261 REMARK 465 VAL A 262 REMARK 465 SER A 263 REMARK 465 THR A 264 REMARK 465 GLY A 265 REMARK 465 THR A 344 REMARK 465 LYS A 345 REMARK 465 GLN A 346 REMARK 465 ALA A 347 REMARK 465 SER A 348 REMARK 465 ASN A 349 REMARK 465 HIS A 350 REMARK 465 SER A 351 REMARK 465 GLU A 352 REMARK 465 LYS A 353 REMARK 465 GLN A 354 REMARK 465 LYS A 355 REMARK 465 ILE A 356 REMARK 465 ARG A 357 REMARK 465 LYS A 358 REMARK 465 PRO A 359 REMARK 465 GLN A 398 REMARK 465 GLY B 246 REMARK 465 GLU B 247 REMARK 465 ALA B 248 REMARK 465 PRO B 249 REMARK 465 VAL B 250 REMARK 465 GLN B 251 REMARK 465 PRO B 252 REMARK 465 ILE B 253 REMARK 465 LEU B 254 REMARK 465 SER B 255 REMARK 465 SER B 256 REMARK 465 VAL B 257 REMARK 465 PRO B 258 REMARK 465 THR B 259 REMARK 465 THR B 260 REMARK 465 GLU B 261 REMARK 465 VAL B 262 REMARK 465 SER B 263 REMARK 465 THR B 264 REMARK 465 GLY B 265 REMARK 465 THR B 344 REMARK 465 LYS B 345 REMARK 465 GLN B 346 REMARK 465 ALA B 347 REMARK 465 SER B 348 REMARK 465 ASN B 349 REMARK 465 HIS B 350 REMARK 465 SER B 351 REMARK 465 GLU B 352 REMARK 465 LYS B 353 REMARK 465 GLN B 354 REMARK 465 LYS B 355 REMARK 465 ILE B 356 REMARK 465 ARG B 357 REMARK 465 LYS B 358 REMARK 465 ASP B 396 REMARK 465 LYS B 397 REMARK 465 GLN B 398 REMARK 465 GLY C 246 REMARK 465 GLU C 247 REMARK 465 ALA C 248 REMARK 465 PRO C 249 REMARK 465 VAL C 250 REMARK 465 GLN C 251 REMARK 465 PRO C 252 REMARK 465 ILE C 253 REMARK 465 LEU C 254 REMARK 465 SER C 255 REMARK 465 SER C 256 REMARK 465 VAL C 257 REMARK 465 PRO C 258 REMARK 465 THR C 259 REMARK 465 THR C 260 REMARK 465 GLU C 261 REMARK 465 VAL C 262 REMARK 465 SER C 263 REMARK 465 THR C 264 REMARK 465 GLY C 265 REMARK 465 THR C 344 REMARK 465 LYS C 345 REMARK 465 GLN C 346 REMARK 465 ALA C 347 REMARK 465 SER C 348 REMARK 465 ASN C 349 REMARK 465 HIS C 350 REMARK 465 SER C 351 REMARK 465 GLU C 352 REMARK 465 LYS C 353 REMARK 465 GLN C 354 REMARK 465 LYS C 355 REMARK 465 ILE C 356 REMARK 465 ARG C 357 REMARK 465 LYS C 358 REMARK 465 ILE C 393 REMARK 465 TYR C 394 REMARK 465 ILE C 395 REMARK 465 ASP C 396 REMARK 465 LYS C 397 REMARK 465 GLN C 398 REMARK 465 GLY D 246 REMARK 465 GLU D 247 REMARK 465 ALA D 248 REMARK 465 PRO D 249 REMARK 465 VAL D 250 REMARK 465 GLN D 251 REMARK 465 PRO D 252 REMARK 465 ILE D 253 REMARK 465 LEU D 254 REMARK 465 SER D 255 REMARK 465 SER D 256 REMARK 465 VAL D 257 REMARK 465 PRO D 258 REMARK 465 THR D 259 REMARK 465 THR D 260 REMARK 465 GLU D 261 REMARK 465 VAL D 262 REMARK 465 SER D 263 REMARK 465 THR D 264 REMARK 465 GLY D 265 REMARK 465 THR D 344 REMARK 465 LYS D 345 REMARK 465 GLN D 346 REMARK 465 ALA D 347 REMARK 465 SER D 348 REMARK 465 ASN D 349 REMARK 465 HIS D 350 REMARK 465 SER D 351 REMARK 465 GLU D 352 REMARK 465 LYS D 353 REMARK 465 GLN D 354 REMARK 465 LYS D 355 REMARK 465 ILE D 356 REMARK 465 ARG D 357 REMARK 465 LYS D 358 REMARK 465 ILE D 395 REMARK 465 ASP D 396 REMARK 465 LYS D 397 REMARK 465 GLN D 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 301 175.84 -58.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6G24 RELATED DB: PDB REMARK 900 RELATED ID: 6G25 RELATED DB: PDB REMARK 900 RELATED ID: 6G27 RELATED DB: PDB REMARK 900 RELATED ID: 6G29 RELATED DB: PDB REMARK 900 RELATED ID: 6G2B RELATED DB: PDB REMARK 900 RELATED ID: 6G2C RELATED DB: PDB REMARK 900 RELATED ID: 6G2E RELATED DB: PDB REMARK 900 RELATED ID: 6G2F RELATED DB: PDB REMARK 900 RELATED ID: 6G2O RELATED DB: PDB REMARK 900 RELATED ID: 6G3P RELATED DB: PDB DBREF 6G3T A 247 398 UNP Q9BZ95 NSD3_HUMAN 247 398 DBREF 6G3T B 247 398 UNP Q9BZ95 NSD3_HUMAN 247 398 DBREF 6G3T C 247 398 UNP Q9BZ95 NSD3_HUMAN 247 398 DBREF 6G3T D 247 398 UNP Q9BZ95 NSD3_HUMAN 247 398 SEQADV 6G3T GLY A 246 UNP Q9BZ95 EXPRESSION TAG SEQADV 6G3T GLY B 246 UNP Q9BZ95 EXPRESSION TAG SEQADV 6G3T GLY C 246 UNP Q9BZ95 EXPRESSION TAG SEQADV 6G3T GLY D 246 UNP Q9BZ95 EXPRESSION TAG SEQRES 1 A 153 GLY GLU ALA PRO VAL GLN PRO ILE LEU SER SER VAL PRO SEQRES 2 A 153 THR THR GLU VAL SER THR GLY VAL LYS PHE GLN VAL GLY SEQRES 3 A 153 ASP LEU VAL TRP SER LYS VAL GLY THR TYR PRO TRP TRP SEQRES 4 A 153 PRO CYS MET VAL SER SER ASP PRO GLN LEU GLU VAL HIS SEQRES 5 A 153 THR LYS ILE ASN THR ARG GLY ALA ARG GLU TYR HIS VAL SEQRES 6 A 153 GLN PHE PHE SER ASN GLN PRO GLU ARG ALA TRP VAL HIS SEQRES 7 A 153 GLU LYS ARG VAL ARG GLU TYR LYS GLY HIS LYS GLN TYR SEQRES 8 A 153 GLU GLU LEU LEU ALA GLU ALA THR LYS GLN ALA SER ASN SEQRES 9 A 153 HIS SER GLU LYS GLN LYS ILE ARG LYS PRO ARG PRO GLN SEQRES 10 A 153 ARG GLU ARG ALA GLN TRP ASP ILE GLY ILE ALA HIS ALA SEQRES 11 A 153 GLU LYS ALA LEU LYS MET THR ARG GLU GLU ARG ILE GLU SEQRES 12 A 153 GLN TYR THR PHE ILE TYR ILE ASP LYS GLN SEQRES 1 B 153 GLY GLU ALA PRO VAL GLN PRO ILE LEU SER SER VAL PRO SEQRES 2 B 153 THR THR GLU VAL SER THR GLY VAL LYS PHE GLN VAL GLY SEQRES 3 B 153 ASP LEU VAL TRP SER LYS VAL GLY THR TYR PRO TRP TRP SEQRES 4 B 153 PRO CYS MET VAL SER SER ASP PRO GLN LEU GLU VAL HIS SEQRES 5 B 153 THR LYS ILE ASN THR ARG GLY ALA ARG GLU TYR HIS VAL SEQRES 6 B 153 GLN PHE PHE SER ASN GLN PRO GLU ARG ALA TRP VAL HIS SEQRES 7 B 153 GLU LYS ARG VAL ARG GLU TYR LYS GLY HIS LYS GLN TYR SEQRES 8 B 153 GLU GLU LEU LEU ALA GLU ALA THR LYS GLN ALA SER ASN SEQRES 9 B 153 HIS SER GLU LYS GLN LYS ILE ARG LYS PRO ARG PRO GLN SEQRES 10 B 153 ARG GLU ARG ALA GLN TRP ASP ILE GLY ILE ALA HIS ALA SEQRES 11 B 153 GLU LYS ALA LEU LYS MET THR ARG GLU GLU ARG ILE GLU SEQRES 12 B 153 GLN TYR THR PHE ILE TYR ILE ASP LYS GLN SEQRES 1 C 153 GLY GLU ALA PRO VAL GLN PRO ILE LEU SER SER VAL PRO SEQRES 2 C 153 THR THR GLU VAL SER THR GLY VAL LYS PHE GLN VAL GLY SEQRES 3 C 153 ASP LEU VAL TRP SER LYS VAL GLY THR TYR PRO TRP TRP SEQRES 4 C 153 PRO CYS MET VAL SER SER ASP PRO GLN LEU GLU VAL HIS SEQRES 5 C 153 THR LYS ILE ASN THR ARG GLY ALA ARG GLU TYR HIS VAL SEQRES 6 C 153 GLN PHE PHE SER ASN GLN PRO GLU ARG ALA TRP VAL HIS SEQRES 7 C 153 GLU LYS ARG VAL ARG GLU TYR LYS GLY HIS LYS GLN TYR SEQRES 8 C 153 GLU GLU LEU LEU ALA GLU ALA THR LYS GLN ALA SER ASN SEQRES 9 C 153 HIS SER GLU LYS GLN LYS ILE ARG LYS PRO ARG PRO GLN SEQRES 10 C 153 ARG GLU ARG ALA GLN TRP ASP ILE GLY ILE ALA HIS ALA SEQRES 11 C 153 GLU LYS ALA LEU LYS MET THR ARG GLU GLU ARG ILE GLU SEQRES 12 C 153 GLN TYR THR PHE ILE TYR ILE ASP LYS GLN SEQRES 1 D 153 GLY GLU ALA PRO VAL GLN PRO ILE LEU SER SER VAL PRO SEQRES 2 D 153 THR THR GLU VAL SER THR GLY VAL LYS PHE GLN VAL GLY SEQRES 3 D 153 ASP LEU VAL TRP SER LYS VAL GLY THR TYR PRO TRP TRP SEQRES 4 D 153 PRO CYS MET VAL SER SER ASP PRO GLN LEU GLU VAL HIS SEQRES 5 D 153 THR LYS ILE ASN THR ARG GLY ALA ARG GLU TYR HIS VAL SEQRES 6 D 153 GLN PHE PHE SER ASN GLN PRO GLU ARG ALA TRP VAL HIS SEQRES 7 D 153 GLU LYS ARG VAL ARG GLU TYR LYS GLY HIS LYS GLN TYR SEQRES 8 D 153 GLU GLU LEU LEU ALA GLU ALA THR LYS GLN ALA SER ASN SEQRES 9 D 153 HIS SER GLU LYS GLN LYS ILE ARG LYS PRO ARG PRO GLN SEQRES 10 D 153 ARG GLU ARG ALA GLN TRP ASP ILE GLY ILE ALA HIS ALA SEQRES 11 D 153 GLU LYS ALA LEU LYS MET THR ARG GLU GLU ARG ILE GLU SEQRES 12 D 153 GLN TYR THR PHE ILE TYR ILE ASP LYS GLN HET EPE A 401 15 HET EPE B 401 15 HET EPE D 401 15 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 EPE 3(C8 H18 N2 O4 S) FORMUL 8 HOH *137(H2 O) HELIX 1 AA1 GLY A 332 LYS A 334 5 3 HELIX 2 AA2 GLN A 335 ALA A 343 1 9 HELIX 3 AA3 PRO A 361 LEU A 379 1 19 HELIX 4 AA4 THR A 382 THR A 391 1 10 HELIX 5 AA5 GLY B 332 LYS B 334 5 3 HELIX 6 AA6 GLN B 335 ALA B 343 1 9 HELIX 7 AA7 PRO B 361 LEU B 379 1 19 HELIX 8 AA8 THR B 382 THR B 391 1 10 HELIX 9 AA9 GLY C 332 LYS C 334 5 3 HELIX 10 AB1 GLN C 335 ALA C 343 1 9 HELIX 11 AB2 PRO C 361 LEU C 379 1 19 HELIX 12 AB3 THR C 382 THR C 391 1 10 HELIX 13 AB4 GLY D 332 LYS D 334 5 3 HELIX 14 AB5 GLN D 335 ALA D 343 1 9 HELIX 15 AB6 PRO D 361 LEU D 379 1 19 HELIX 16 AB7 THR D 382 THR D 391 1 10 SHEET 1 AA1 3 THR A 298 ILE A 300 0 SHEET 2 AA1 3 ARG A 306 PHE A 312 -1 O GLU A 307 N LYS A 299 SHEET 3 AA1 3 ARG A 319 HIS A 323 -1 O VAL A 322 N TYR A 308 SHEET 1 AA2 5 THR A 298 ILE A 300 0 SHEET 2 AA2 5 ARG A 306 PHE A 312 -1 O GLU A 307 N LYS A 299 SHEET 3 AA2 5 TRP A 284 VAL A 288 -1 N MET A 287 O GLN A 311 SHEET 4 AA2 5 LEU A 273 SER A 276 -1 N VAL A 274 O CYS A 286 SHEET 5 AA2 5 VAL A 327 GLU A 329 -1 O ARG A 328 N TRP A 275 SHEET 1 AA3 3 THR B 298 ILE B 300 0 SHEET 2 AA3 3 ARG B 306 PHE B 312 -1 O GLU B 307 N LYS B 299 SHEET 3 AA3 3 ARG B 319 HIS B 323 -1 O VAL B 322 N TYR B 308 SHEET 1 AA4 5 THR B 298 ILE B 300 0 SHEET 2 AA4 5 ARG B 306 PHE B 312 -1 O GLU B 307 N LYS B 299 SHEET 3 AA4 5 TRP B 284 VAL B 288 -1 N MET B 287 O GLN B 311 SHEET 4 AA4 5 LEU B 273 SER B 276 -1 N VAL B 274 O CYS B 286 SHEET 5 AA4 5 VAL B 327 GLU B 329 -1 O ARG B 328 N TRP B 275 SHEET 1 AA5 3 THR C 298 ILE C 300 0 SHEET 2 AA5 3 ARG C 306 PHE C 312 -1 O GLU C 307 N LYS C 299 SHEET 3 AA5 3 ARG C 319 HIS C 323 -1 O VAL C 322 N TYR C 308 SHEET 1 AA6 5 THR C 298 ILE C 300 0 SHEET 2 AA6 5 ARG C 306 PHE C 312 -1 O GLU C 307 N LYS C 299 SHEET 3 AA6 5 TRP C 284 VAL C 288 -1 N MET C 287 O GLN C 311 SHEET 4 AA6 5 LEU C 273 SER C 276 -1 N VAL C 274 O CYS C 286 SHEET 5 AA6 5 VAL C 327 GLU C 329 -1 O ARG C 328 N TRP C 275 SHEET 1 AA7 3 THR D 298 ILE D 300 0 SHEET 2 AA7 3 ARG D 306 PHE D 312 -1 O GLU D 307 N LYS D 299 SHEET 3 AA7 3 ARG D 319 HIS D 323 -1 O VAL D 322 N TYR D 308 SHEET 1 AA8 5 THR D 298 ILE D 300 0 SHEET 2 AA8 5 ARG D 306 PHE D 312 -1 O GLU D 307 N LYS D 299 SHEET 3 AA8 5 TRP D 284 VAL D 288 -1 N MET D 287 O GLN D 311 SHEET 4 AA8 5 LEU D 273 SER D 276 -1 N VAL D 274 O CYS D 286 SHEET 5 AA8 5 VAL D 327 GLU D 329 -1 O ARG D 328 N TRP D 275 SITE 1 AC1 8 TYR A 281 TRP A 284 PHE A 312 SER A 314 SITE 2 AC1 8 GLU A 318 ARG A 363 ILE B 300 ARG B 306 SITE 1 AC2 9 THR A 298 ILE A 300 ARG A 306 TYR B 281 SITE 2 AC2 9 TRP B 284 PHE B 312 SER B 314 GLU B 318 SITE 3 AC2 9 ARG B 363 SITE 1 AC3 11 THR C 298 LYS C 299 ILE C 300 ARG C 306 SITE 2 AC3 11 TYR D 281 TRP D 284 PHE D 312 SER D 314 SITE 3 AC3 11 GLN D 316 GLU D 318 ARG D 363 CRYST1 45.178 88.091 79.988 90.00 89.88 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022135 0.000000 -0.000046 0.00000 SCALE2 0.000000 0.011352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012502 0.00000