HEADER LYASE 26-MAR-18 6G3Z TITLE SULFOLOBUS SULFATARICUS 2-KETO-3-DEOXYGLUCONATE (KDG) ALDOLASE COMPLEX TITLE 2 WITH D-KDPG COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE/2-DEHYDRO-3-DEOXY-6- COMPND 3 PHOSPHOGALACTONATE ALDOLASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 4.1.2.55; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 2-KETO-3-DEOXYGLUCONATE ALDOLASE, SULFOLOBUS SULFATARICUS, 2-DEHYDRO- KEYWDS 2 3-DEOXY-6-PHOSPHO-D-GLUCONATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.CRENNELL REVDAT 3 17-JAN-24 6G3Z 1 REMARK REVDAT 2 11-JUL-18 6G3Z 1 JRNL REVDAT 1 27-JUN-18 6G3Z 0 JRNL AUTH V.ZAITSEV,U.JOHNSEN,M.REHER,M.ORTJOHANN,G.L.TAYLOR, JRNL AUTH 2 M.J.DANSON,P.SCHONHEIT,S.J.CRENNELL JRNL TITL INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF ARCHAEAL JRNL TITL 2 ENTNER-DOUDOROFF ALDOLASES: THE STRUCTURES OF PICROPHILUS JRNL TITL 3 TORRIDUS 2-KETO-3-DEOXYGLUCONATE ALDOLASE AND SULFOLOBUS JRNL TITL 4 SOLFATARICUS 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE IN JRNL TITL 5 COMPLEX WITH 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE. JRNL REF BIOCHEMISTRY V. 57 3797 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29812914 JRNL DOI 10.1021/ACS.BIOCHEM.8B00535 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.2244 - 5.3784 1.00 3082 143 0.1800 0.2424 REMARK 3 2 5.3784 - 4.2696 1.00 2875 154 0.1426 0.1479 REMARK 3 3 4.2696 - 3.7301 1.00 2846 141 0.1566 0.2156 REMARK 3 4 3.7301 - 3.3891 1.00 2814 137 0.1898 0.2539 REMARK 3 5 3.3891 - 3.1462 1.00 2771 133 0.2121 0.2721 REMARK 3 6 3.1462 - 2.9607 0.99 2779 128 0.2134 0.2818 REMARK 3 7 2.9607 - 2.8125 0.99 2718 156 0.2281 0.3049 REMARK 3 8 2.8125 - 2.6900 0.99 2757 140 0.2261 0.2680 REMARK 3 9 2.6900 - 2.5865 0.99 2736 127 0.2354 0.3572 REMARK 3 10 2.5865 - 2.4972 0.98 2701 128 0.2661 0.3410 REMARK 3 11 2.4972 - 2.4192 0.99 2713 147 0.3080 0.3737 REMARK 3 12 2.4192 - 2.3500 0.98 2675 152 0.3555 0.5033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4848 REMARK 3 ANGLE : 1.003 6563 REMARK 3 CHIRALITY : 0.052 750 REMARK 3 PLANARITY : 0.006 825 REMARK 3 DIHEDRAL : 14.729 2962 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 92.548 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 75.80 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 79.10 REMARK 200 R MERGE FOR SHELL (I) : 2.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1W37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 4000, 8% ISOPROPANOL, 0.1M REMARK 280 HEPES PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 163.75733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.87867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.81800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.93933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 204.69667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 163.75733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 81.87867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.93933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 122.81800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 204.69667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -53.43250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 92.54780 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -40.93933 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 157 HO4 ELE A 301 1.32 REMARK 500 HG1 THR B 44 O11 ELE B 301 1.48 REMARK 500 HG1 THR B 44 O11 ELE B 301 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH TYR A 104 OG SER B 49 12564 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 38.17 -91.72 REMARK 500 ASN A 41 34.63 77.33 REMARK 500 TYR A 103 -64.71 72.55 REMARK 500 ASN A 160 98.82 -175.92 REMARK 500 ASP B 64 8.00 -69.41 REMARK 500 VAL B 65 -35.33 -134.35 REMARK 500 TYR B 103 -68.73 73.48 REMARK 500 ILE B 158 145.93 -176.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ELE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ELE B 301 and LYS B REMARK 800 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ELE B 301 and LYS B REMARK 800 155 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UXD RELATED DB: PDB REMARK 900 CONTAINED IN THE SAME PAPER DBREF 6G3Z A 1 294 UNP O54288 KDGA_SULSF 1 294 DBREF 6G3Z B 1 294 UNP O54288 KDGA_SULSF 1 294 SEQRES 1 A 294 MET PRO GLU ILE ILE THR PRO ILE ILE THR PRO PHE THR SEQRES 2 A 294 LYS ASP ASN ARG ILE ASP LYS GLU LYS LEU LYS ILE HIS SEQRES 3 A 294 ALA GLU ASN LEU ILE ARG LYS GLY ILE ASP LYS LEU PHE SEQRES 4 A 294 VAL ASN GLY THR THR GLY LEU GLY PRO SER LEU SER PRO SEQRES 5 A 294 GLU GLU LYS LEU GLU ASN LEU LYS ALA VAL TYR ASP VAL SEQRES 6 A 294 THR ASN LYS ILE ILE PHE GLN VAL GLY GLY LEU ASN LEU SEQRES 7 A 294 ASP ASP ALA ILE ARG LEU ALA LYS LEU SER LYS ASP PHE SEQRES 8 A 294 ASP ILE VAL GLY ILE ALA SER TYR ALA PRO TYR TYR TYR SEQRES 9 A 294 PRO ARG MET SER GLU LYS HIS LEU VAL LYS TYR PHE LYS SEQRES 10 A 294 THR LEU CYS GLU VAL SER PRO HIS PRO VAL TYR LEU TYR SEQRES 11 A 294 ASN TYR PRO THR ALA THR GLY LYS ASP ILE ASP ALA LYS SEQRES 12 A 294 VAL ALA LYS GLU ILE GLY CYS PHE THR GLY VAL LYS ASP SEQRES 13 A 294 THR ILE GLU ASN ILE ILE HIS THR LEU ASP TYR LYS ARG SEQRES 14 A 294 LEU ASN PRO ASN MET LEU VAL TYR SER GLY SER ASP MET SEQRES 15 A 294 LEU ILE ALA THR VAL ALA SER THR GLY LEU ASP GLY ASN SEQRES 16 A 294 VAL ALA ALA GLY SER ASN TYR LEU PRO GLU VAL THR VAL SEQRES 17 A 294 THR ILE LYS LYS LEU ALA MET GLU ARG LYS ILE ASP GLU SEQRES 18 A 294 ALA LEU LYS LEU GLN PHE LEU HIS ASP GLU VAL ILE GLU SEQRES 19 A 294 ALA SER ARG ILE PHE GLY SER LEU SER SER ASN TYR VAL SEQRES 20 A 294 LEU THR LYS TYR PHE GLN GLY TYR ASP LEU GLY TYR PRO SEQRES 21 A 294 ARG PRO PRO ILE PHE PRO LEU ASP ASP GLU GLU GLU ARG SEQRES 22 A 294 GLN LEU ILE LYS LYS VAL GLU GLY ILE ARG ALA LYS LEU SEQRES 23 A 294 VAL GLU LEU LYS ILE LEU LYS GLU SEQRES 1 B 294 MET PRO GLU ILE ILE THR PRO ILE ILE THR PRO PHE THR SEQRES 2 B 294 LYS ASP ASN ARG ILE ASP LYS GLU LYS LEU LYS ILE HIS SEQRES 3 B 294 ALA GLU ASN LEU ILE ARG LYS GLY ILE ASP LYS LEU PHE SEQRES 4 B 294 VAL ASN GLY THR THR GLY LEU GLY PRO SER LEU SER PRO SEQRES 5 B 294 GLU GLU LYS LEU GLU ASN LEU LYS ALA VAL TYR ASP VAL SEQRES 6 B 294 THR ASN LYS ILE ILE PHE GLN VAL GLY GLY LEU ASN LEU SEQRES 7 B 294 ASP ASP ALA ILE ARG LEU ALA LYS LEU SER LYS ASP PHE SEQRES 8 B 294 ASP ILE VAL GLY ILE ALA SER TYR ALA PRO TYR TYR TYR SEQRES 9 B 294 PRO ARG MET SER GLU LYS HIS LEU VAL LYS TYR PHE LYS SEQRES 10 B 294 THR LEU CYS GLU VAL SER PRO HIS PRO VAL TYR LEU TYR SEQRES 11 B 294 ASN TYR PRO THR ALA THR GLY LYS ASP ILE ASP ALA LYS SEQRES 12 B 294 VAL ALA LYS GLU ILE GLY CYS PHE THR GLY VAL LYS ASP SEQRES 13 B 294 THR ILE GLU ASN ILE ILE HIS THR LEU ASP TYR LYS ARG SEQRES 14 B 294 LEU ASN PRO ASN MET LEU VAL TYR SER GLY SER ASP MET SEQRES 15 B 294 LEU ILE ALA THR VAL ALA SER THR GLY LEU ASP GLY ASN SEQRES 16 B 294 VAL ALA ALA GLY SER ASN TYR LEU PRO GLU VAL THR VAL SEQRES 17 B 294 THR ILE LYS LYS LEU ALA MET GLU ARG LYS ILE ASP GLU SEQRES 18 B 294 ALA LEU LYS LEU GLN PHE LEU HIS ASP GLU VAL ILE GLU SEQRES 19 B 294 ALA SER ARG ILE PHE GLY SER LEU SER SER ASN TYR VAL SEQRES 20 B 294 LEU THR LYS TYR PHE GLN GLY TYR ASP LEU GLY TYR PRO SEQRES 21 B 294 ARG PRO PRO ILE PHE PRO LEU ASP ASP GLU GLU GLU ARG SEQRES 22 B 294 GLN LEU ILE LYS LYS VAL GLU GLY ILE ARG ALA LYS LEU SEQRES 23 B 294 VAL GLU LEU LYS ILE LEU LYS GLU HET ELE A 301 46 HET IPA A 302 12 HET IPA A 303 12 HET IPA A 304 12 HET IPA A 305 12 HET IPA A 306 12 HET ELE B 301 46 HET IPA B 302 12 HET IPA B 303 12 HETNAM ELE 2-KETO 3 DEOXY 6 PHOSPHO GLUCONATE HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 3 ELE 2(C6 H11 O9 P) FORMUL 4 IPA 7(C3 H8 O) FORMUL 12 HOH *78(H2 O) HELIX 1 AA1 ASP A 19 LYS A 33 1 15 HELIX 2 AA2 LEU A 46 LEU A 50 5 5 HELIX 3 AA3 SER A 51 ASP A 64 1 14 HELIX 4 AA4 ASN A 77 SER A 88 1 12 HELIX 5 AA5 LYS A 89 PHE A 91 5 3 HELIX 6 AA6 SER A 108 SER A 123 1 16 HELIX 7 AA7 TYR A 132 GLY A 137 1 6 HELIX 8 AA8 ASP A 141 GLY A 149 1 9 HELIX 9 AA9 ASN A 160 ASN A 171 1 12 HELIX 10 AB1 LEU A 183 GLY A 191 1 9 HELIX 11 AB2 ALA A 198 TYR A 202 5 5 HELIX 12 AB3 LEU A 203 GLU A 216 1 14 HELIX 13 AB4 LYS A 218 ILE A 238 1 21 HELIX 14 AB5 GLY A 240 GLY A 254 1 15 HELIX 15 AB6 ASP A 268 LEU A 289 1 22 HELIX 16 AB7 ASP B 19 LYS B 33 1 15 HELIX 17 AB8 LEU B 46 LEU B 50 5 5 HELIX 18 AB9 SER B 51 ASP B 64 1 14 HELIX 19 AC1 ASN B 77 SER B 88 1 12 HELIX 20 AC2 LYS B 89 PHE B 91 5 3 HELIX 21 AC3 SER B 108 SER B 123 1 16 HELIX 22 AC4 TYR B 132 GLY B 137 1 6 HELIX 23 AC5 ASP B 141 GLY B 149 1 9 HELIX 24 AC6 ASN B 160 ASN B 171 1 12 HELIX 25 AC7 LEU B 183 GLY B 191 1 9 HELIX 26 AC8 ALA B 198 TYR B 202 5 5 HELIX 27 AC9 LEU B 203 GLU B 216 1 14 HELIX 28 AD1 LYS B 218 PHE B 239 1 22 HELIX 29 AD2 GLY B 240 GLY B 254 1 15 HELIX 30 AD3 ASP B 268 GLU B 288 1 21 SHEET 1 AA1 9 GLU A 3 PRO A 7 0 SHEET 2 AA1 9 LYS A 37 VAL A 40 1 O PHE A 39 N THR A 6 SHEET 3 AA1 9 ILE A 69 GLN A 72 1 O ILE A 70 N LEU A 38 SHEET 4 AA1 9 GLY A 95 TYR A 99 1 O GLY A 95 N PHE A 71 SHEET 5 AA1 9 VAL A 127 ASN A 131 1 O TYR A 128 N ILE A 96 SHEET 6 AA1 9 PHE A 151 ASP A 156 1 O LYS A 155 N ASN A 131 SHEET 7 AA1 9 LEU A 175 SER A 178 1 O TYR A 177 N VAL A 154 SHEET 8 AA1 9 GLY A 194 VAL A 196 1 O GLY A 194 N SER A 178 SHEET 9 AA1 9 GLU A 3 PRO A 7 1 N ILE A 5 O ASN A 195 SHEET 1 AA2 9 GLU B 3 PRO B 7 0 SHEET 2 AA2 9 LYS B 37 VAL B 40 1 O PHE B 39 N THR B 6 SHEET 3 AA2 9 ILE B 69 GLN B 72 1 O ILE B 70 N VAL B 40 SHEET 4 AA2 9 GLY B 95 TYR B 99 1 O GLY B 95 N PHE B 71 SHEET 5 AA2 9 VAL B 127 ASN B 131 1 O TYR B 128 N ILE B 96 SHEET 6 AA2 9 PHE B 151 ASP B 156 1 O THR B 152 N VAL B 127 SHEET 7 AA2 9 LEU B 175 SER B 178 1 O TYR B 177 N VAL B 154 SHEET 8 AA2 9 GLY B 194 VAL B 196 1 O VAL B 196 N SER B 178 SHEET 9 AA2 9 GLU B 3 PRO B 7 1 N ILE B 5 O ASN B 195 SSBOND 1 CYS A 120 CYS A 150 1555 1555 2.04 SSBOND 2 CYS B 120 CYS B 150 1555 1555 2.04 LINK NZ LYS A 155 C2 AELE A 301 1555 1555 1.27 LINK NZ LYS A 155 C2 BELE A 301 1555 1555 1.28 LINK NZ LYS B 155 C2 AELE B 301 1555 1555 1.27 LINK NZ LYS B 155 C2 BELE B 301 1555 1555 1.28 CISPEP 1 PRO A 262 PRO A 263 0 12.09 CISPEP 2 PRO B 262 PRO B 263 0 13.01 SITE 1 AC1 21 PRO A 7 GLY A 42 THR A 43 THR A 44 SITE 2 AC1 21 TYR A 130 TYR A 132 LYS A 155 THR A 157 SITE 3 AC1 21 GLY A 179 VAL A 196 ALA A 198 ARG A 237 SITE 4 AC1 21 SER A 241 HOH A 404 HOH A 408 HOH A 411 SITE 5 AC1 21 HOH A 432 HOH A 433 PRO B 105 ARG B 106 SITE 6 AC1 21 HOH B 433 SITE 1 AC2 2 LYS A 114 GLU A 121 SITE 1 AC3 2 ASP A 220 LYS A 224 SITE 1 AC4 4 PRO A 2 ASN A 67 ASP A 92 LYS A 211 SITE 1 AC5 2 ASP A 90 GLU A 216 SITE 1 AC6 3 HIS A 125 HOH A 410 HOH A 419 SITE 1 AC7 1 ASP B 90 SITE 1 AC8 2 CYS B 120 CYS B 150 SITE 1 AC9 25 ARG A 106 PRO B 7 PHE B 39 GLY B 42 SITE 2 AC9 25 THR B 43 THR B 44 LEU B 129 TYR B 130 SITE 3 AC9 25 ASN B 131 TYR B 132 VAL B 154 ASP B 156 SITE 4 AC9 25 THR B 157 TYR B 177 GLY B 179 VAL B 196 SITE 5 AC9 25 ALA B 198 ARG B 237 SER B 241 HOH B 401 SITE 6 AC9 25 HOH B 402 HOH B 406 HOH B 421 HOH B 427 SITE 7 AC9 25 HOH B 429 SITE 1 AD1 25 ARG A 106 PRO B 7 PHE B 39 GLY B 42 SITE 2 AD1 25 THR B 43 THR B 44 LEU B 129 TYR B 130 SITE 3 AD1 25 ASN B 131 TYR B 132 VAL B 154 ASP B 156 SITE 4 AD1 25 THR B 157 TYR B 177 GLY B 179 VAL B 196 SITE 5 AD1 25 ALA B 198 ARG B 237 SER B 241 HOH B 401 SITE 6 AD1 25 HOH B 402 HOH B 406 HOH B 421 HOH B 427 SITE 7 AD1 25 HOH B 429 CRYST1 106.865 106.865 245.636 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009358 0.005403 0.000000 0.00000 SCALE2 0.000000 0.010805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004071 0.00000