HEADER ANTIMICROBIAL PROTEIN 27-MAR-18 6G4K TITLE THE SOLUTION NMR STRUCTURE OF BREVININ-1BYA IN SODIUM DODECYL SULPHATE TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BREVININ-1BYA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: RANA BOYLII; SOURCE 4 ORGANISM_COMMON: FOOTHILL YELLOW-LEGGED FROG; SOURCE 5 ORGANISM_TAXID: 160499 KEYWDS CATIONIC, RANA-BOX, ANTIMICROBIAL PEPTIDE, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.B.TIMMONS,D.P.O'FLYNN,J.M.CONLON,C.M.HEWAGE REVDAT 3 14-JUN-23 6G4K 1 REMARK REVDAT 2 27-NOV-19 6G4K 1 JRNL REVDAT 1 09-OCT-19 6G4K 0 JRNL AUTH P.B.TIMMONS,D.O'FLYNN,J.M.CONLON,C.M.HEWAGE JRNL TITL STRUCTURAL AND POSITIONAL STUDIES OF THE ANTIMICROBIAL JRNL TITL 2 PEPTIDE BREVININ-1BYA IN MEMBRANE-MIMETIC ENVIRONMENTS. JRNL REF J.PEPT.SCI. V. 25 E3208 2019 JRNL REFN ISSN 1075-2617 JRNL PMID 31721374 JRNL DOI 10.1002/PSC.3208 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.CONLON,A.SONNEVEND,M.PATEL,C.DAVIDSON,P.F.NIELSEN,T.PAL, REMARK 1 AUTH 2 L.A.ROLLINS-SMITH REMARK 1 TITL ISOLATION OF PEPTIDES OF THE BREVININ-1 FAMILY WITH POTENT REMARK 1 TITL 2 CANDIDACIDAL ACTIVITY FROM THE SKIN SECRETIONS OF THE FROG REMARK 1 TITL 3 RANA BOYLII. REMARK 1 REF J. PEPT. RES. V. 62 207 2003 REMARK 1 REFN ISSN 1397-002X REMARK 1 PMID 14531844 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, NAMD REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), NIH REMARK 3 CENTER FOR MACROMOLECULAR MODELING & REMARK 3 BIOINFORMATICS (NAMD) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009410. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 100000 PA REMARK 210 SAMPLE CONTENTS : 1.5 MM NA- BREVININ-1BYA, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRFAM-SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 23 2.37 -161.69 REMARK 500 2 LEU A 2 77.43 -110.75 REMARK 500 4 LYS A 11 -17.69 -150.14 REMARK 500 6 LYS A 11 -25.64 -144.90 REMARK 500 7 LYS A 11 -24.35 -142.47 REMARK 500 7 LYS A 22 18.74 85.37 REMARK 500 7 LYS A 23 8.40 -160.71 REMARK 500 8 LYS A 23 -4.74 -173.78 REMARK 500 9 LYS A 11 -9.67 -154.37 REMARK 500 9 LYS A 22 62.65 64.42 REMARK 500 10 LEU A 2 -50.75 -165.99 REMARK 500 10 LYS A 22 -18.62 68.38 REMARK 500 10 LYS A 23 9.91 -159.25 REMARK 500 11 LYS A 11 -26.88 -140.15 REMARK 500 11 LYS A 22 18.78 84.10 REMARK 500 11 LYS A 23 11.20 -160.83 REMARK 500 12 LEU A 2 174.89 60.52 REMARK 500 12 LYS A 22 40.08 75.84 REMARK 500 13 LYS A 11 -0.78 -152.15 REMARK 500 13 LYS A 23 18.30 -140.39 REMARK 500 15 PRO A 3 61.13 -100.41 REMARK 500 15 LYS A 11 -0.94 -149.02 REMARK 500 15 LYS A 22 25.31 87.05 REMARK 500 15 LYS A 23 2.99 -165.86 REMARK 500 16 LEU A 2 178.58 60.09 REMARK 500 16 LYS A 22 20.34 85.30 REMARK 500 16 LYS A 23 8.89 -161.50 REMARK 500 17 LYS A 23 -4.11 -159.29 REMARK 500 18 THR A 21 14.62 -146.38 REMARK 500 18 LYS A 22 -25.29 69.78 REMARK 500 19 PRO A 3 67.25 -100.15 REMARK 500 19 LYS A 11 -30.51 -135.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34251 RELATED DB: BMRB REMARK 900 THE SOLUTION NMR STRUCTURE OF BREVININ-1BYA IN SODIUM DODECYL REMARK 900 SULPHATE MICELLES DBREF 6G4K A 1 24 UNP P84111 BR1YA_RANBO 1 24 SEQRES 1 A 24 PHE LEU PRO ILE LEU ALA SER LEU ALA ALA LYS PHE GLY SEQRES 2 A 24 PRO LYS LEU PHE CYS LEU VAL THR LYS LYS CYS HELIX 1 AA1 PRO A 3 PHE A 12 1 10 HELIX 2 AA2 PHE A 12 LYS A 22 1 11 SSBOND 1 CYS A 18 CYS A 24 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1