HEADER TRANSFERASE 29-MAR-18 6G54 TITLE CRYSTAL STRUCTURE OF ERK2 COVALENTLY BOUND TO SM1-71 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2, COMPND 5 MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2, COMPND 6 MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, COVALENT INHIBITOR, MAPK, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,R.SUMAN,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,N.S.GRAY, AUTHOR 2 S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 13-NOV-24 6G54 1 REMARK REVDAT 4 17-JAN-24 6G54 1 REMARK REVDAT 3 03-JUL-19 6G54 1 JRNL REVDAT 2 01-MAY-19 6G54 1 JRNL REVDAT 1 27-FEB-19 6G54 0 JRNL AUTH S.RAO,D.GURBANI,G.DU,R.A.EVERLEY,C.M.BROWNE,A.CHAIKUAD, JRNL AUTH 2 L.TAN,M.SCHRODER,S.GONDI,S.B.FICARRO,T.SIM,N.D.KIM, JRNL AUTH 3 M.J.BERBERICH,S.KNAPP,J.A.MARTO,K.D.WESTOVER,P.K.SORGER, JRNL AUTH 4 N.S.GRAY JRNL TITL LEVERAGING COMPOUND PROMISCUITY TO IDENTIFY TARGETABLE JRNL TITL 2 CYSTEINES WITHIN THE KINOME. JRNL REF CELL CHEM BIOL V. 26 818 2019 JRNL REFN ESSN 2451-9456 JRNL PMID 30982749 JRNL DOI 10.1016/J.CHEMBIOL.2019.02.021 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.901 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3011 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2825 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4058 ; 1.348 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6561 ; 0.734 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 6.311 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;39.277 ;24.126 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;14.461 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.555 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3352 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1393 ; 1.677 ; 3.348 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1392 ; 1.676 ; 3.348 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1742 ; 2.631 ; 5.014 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1743 ; 2.631 ; 5.015 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 2.159 ; 3.767 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1618 ; 2.149 ; 3.767 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2314 ; 3.461 ; 5.499 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3531 ; 7.098 ;41.529 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3532 ; 7.100 ;41.548 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 80.2110 10.1121 8.0592 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.2538 REMARK 3 T33: 0.3502 T12: -0.0025 REMARK 3 T13: 0.0004 T23: 0.2280 REMARK 3 L TENSOR REMARK 3 L11: 2.4337 L22: 3.5517 REMARK 3 L33: 4.3794 L12: 0.0225 REMARK 3 L13: 0.3530 L23: -1.4152 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.4392 S13: -0.0769 REMARK 3 S21: -0.0432 S22: -0.2507 S23: -0.7905 REMARK 3 S31: 0.1761 S32: 0.1375 S33: 0.2117 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 62.1751 9.5769 0.9965 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.1811 REMARK 3 T33: 0.1006 T12: 0.0689 REMARK 3 T13: 0.0447 T23: 0.0788 REMARK 3 L TENSOR REMARK 3 L11: 2.2006 L22: 1.1906 REMARK 3 L33: 0.6872 L12: 0.7936 REMARK 3 L13: -0.4269 L23: -0.4782 REMARK 3 S TENSOR REMARK 3 S11: 0.1147 S12: -0.0932 S13: -0.2292 REMARK 3 S21: -0.1698 S22: -0.3309 S23: -0.3105 REMARK 3 S31: 0.0966 S32: 0.1738 S33: 0.2162 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 42.4834 14.1034 2.9626 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.1533 REMARK 3 T33: 0.0399 T12: 0.0046 REMARK 3 T13: -0.0046 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 2.0225 L22: 1.4178 REMARK 3 L33: 3.2023 L12: 1.4220 REMARK 3 L13: -1.7588 L23: -1.7538 REMARK 3 S TENSOR REMARK 3 S11: 0.1176 S12: 0.1594 S13: 0.2364 REMARK 3 S21: -0.0555 S22: 0.1423 S23: 0.2333 REMARK 3 S31: 0.1868 S32: -0.3088 S33: -0.2599 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 331 A 356 REMARK 3 ORIGIN FOR THE GROUP (A): 68.7151 -6.1908 -4.9931 REMARK 3 T TENSOR REMARK 3 T11: 0.4254 T22: 0.3690 REMARK 3 T33: 0.5485 T12: 0.1848 REMARK 3 T13: 0.0539 T23: -0.0859 REMARK 3 L TENSOR REMARK 3 L11: 7.1562 L22: 6.4659 REMARK 3 L33: 7.8492 L12: 3.8661 REMARK 3 L13: -0.9241 L23: -0.9285 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.6009 S13: -0.9044 REMARK 3 S21: -0.6354 S22: 0.0366 S23: -0.0683 REMARK 3 S31: 0.9358 S32: -0.4088 S33: -0.0119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30813 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 49.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.91100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QTA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9M LI2SO4 AND 0.1M CITRATE 5.9, PH REMARK 280 5.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.20333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.10167 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.10167 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.20333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 417 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 596 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 357 REMARK 465 TYR A 358 REMARK 465 ARG A 359 REMARK 465 SER A 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 EDO A 415 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 110 -169.35 -166.12 REMARK 500 ASP A 149 45.02 -140.67 REMARK 500 ASP A 167 69.62 65.87 REMARK 500 ASP A 175 69.12 -157.04 REMARK 500 LEU A 294 53.72 -98.17 REMARK 500 ASP A 318 94.77 -164.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6H3 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 417 DBREF 6G54 A 1 360 UNP P28482 MK01_HUMAN 1 360 SEQADV 6G54 SER A 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 361 SER MET ALA ALA ALA ALA ALA ALA GLY ALA GLY PRO GLU SEQRES 2 A 361 MET VAL ARG GLY GLN VAL PHE ASP VAL GLY PRO ARG TYR SEQRES 3 A 361 THR ASN LEU SER TYR ILE GLY GLU GLY ALA TYR GLY MET SEQRES 4 A 361 VAL CYS SER ALA TYR ASP ASN VAL ASN LYS VAL ARG VAL SEQRES 5 A 361 ALA ILE LYS LYS ILE SER PRO PHE GLU HIS GLN THR TYR SEQRES 6 A 361 CYS GLN ARG THR LEU ARG GLU ILE LYS ILE LEU LEU ARG SEQRES 7 A 361 PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN ASP ILE ILE SEQRES 8 A 361 ARG ALA PRO THR ILE GLU GLN MET LYS ASP VAL TYR ILE SEQRES 9 A 361 VAL GLN ASP LEU MET GLU THR ASP LEU TYR LYS LEU LEU SEQRES 10 A 361 LYS THR GLN HIS LEU SER ASN ASP HIS ILE CYS TYR PHE SEQRES 11 A 361 LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR ILE HIS SER SEQRES 12 A 361 ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SER ASN LEU SEQRES 13 A 361 LEU LEU ASN THR THR CYS ASP LEU LYS ILE CYS ASP PHE SEQRES 14 A 361 GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS ASP HIS THR SEQRES 15 A 361 GLY PHE LEU THR GLU TYR VAL ALA THR ARG TRP TYR ARG SEQRES 16 A 361 ALA PRO GLU ILE MET LEU ASN SER LYS GLY TYR THR LYS SEQRES 17 A 361 SER ILE ASP ILE TRP SER VAL GLY CYS ILE LEU ALA GLU SEQRES 18 A 361 MET LEU SER ASN ARG PRO ILE PHE PRO GLY LYS HIS TYR SEQRES 19 A 361 LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE LEU GLY SER SEQRES 20 A 361 PRO SER GLN GLU ASP LEU ASN CYS ILE ILE ASN LEU LYS SEQRES 21 A 361 ALA ARG ASN TYR LEU LEU SER LEU PRO HIS LYS ASN LYS SEQRES 22 A 361 VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA ASP SER LYS SEQRES 23 A 361 ALA LEU ASP LEU LEU ASP LYS MET LEU THR PHE ASN PRO SEQRES 24 A 361 HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU ALA HIS PRO SEQRES 25 A 361 TYR LEU GLU GLN TYR TYR ASP PRO SER ASP GLU PRO ILE SEQRES 26 A 361 ALA GLU ALA PRO PHE LYS PHE ASP MET GLU LEU ASP ASP SEQRES 27 A 361 LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE PHE GLU GLU SEQRES 28 A 361 THR ALA ARG PHE GLN PRO GLY TYR ARG SER HET SO4 A 401 5 HET SO4 A 402 5 HET 6H3 A 403 33 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HET EDO A 415 4 HET EDO A 416 4 HET CL A 417 1 HETNAM SO4 SULFATE ION HETNAM 6H3 N-{2-[(5-CHLORO-2-{[4-(4-METHYLPIPERAZIN-1-YL) HETNAM 2 6H3 PHENYL]AMINO}PYRIMIDIN-4-YL)AMINO]PHENYL}PROPANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 6H3 C24 H28 CL N7 O FORMUL 5 EDO 13(C2 H6 O2) FORMUL 18 CL CL 1- FORMUL 19 HOH *195(H2 O) HELIX 1 AA1 HIS A 61 PHE A 78 1 18 HELIX 2 AA2 LEU A 112 GLN A 119 1 8 HELIX 3 AA3 SER A 122 ALA A 143 1 22 HELIX 4 AA4 LYS A 151 SER A 153 5 3 HELIX 5 AA5 ASP A 175 ASP A 179 5 5 HELIX 6 AA6 THR A 190 ARG A 194 5 5 HELIX 7 AA7 ALA A 195 MET A 199 5 5 HELIX 8 AA8 LYS A 207 ASN A 224 1 18 HELIX 9 AA9 HIS A 232 GLY A 245 1 14 HELIX 10 AB1 SER A 248 ASN A 253 1 6 HELIX 11 AB2 ASN A 257 LEU A 267 1 11 HELIX 12 AB3 PRO A 274 PHE A 279 1 6 HELIX 13 AB4 ASP A 283 LEU A 294 1 12 HELIX 14 AB5 GLU A 303 ALA A 309 1 7 HELIX 15 AB6 HIS A 310 GLU A 314 5 5 HELIX 16 AB7 ASP A 318 GLU A 322 5 5 HELIX 17 AB8 GLU A 334 LEU A 338 5 5 HELIX 18 AB9 PRO A 339 THR A 351 1 13 HELIX 19 AC1 ALA A 352 GLN A 355 5 4 SHEET 1 AA1 2 MET A 13 VAL A 14 0 SHEET 2 AA1 2 GLN A 17 VAL A 18 -1 O GLN A 17 N VAL A 14 SHEET 1 AA2 5 TYR A 25 GLU A 33 0 SHEET 2 AA2 5 MET A 38 ASP A 44 -1 O TYR A 43 N THR A 26 SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O ILE A 53 N CYS A 40 SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O VAL A 101 N ILE A 56 SHEET 5 AA2 5 ASP A 88 ILE A 90 -1 N ASP A 88 O VAL A 104 SHEET 1 AA3 3 THR A 110 ASP A 111 0 SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA4 2 VAL A 145 LEU A 146 0 SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 LINK SG CYS A 166 C31 6H3 A 403 1555 1555 1.81 CISPEP 1 GLY A 22 PRO A 23 0 1.27 SITE 1 AC1 7 ARG A 191 ARG A 194 HIS A 232 TYR A 233 SITE 2 AC1 7 HOH A 523 HOH A 596 HOH A 615 SITE 1 AC2 4 ARG A 15 SER A 29 TYR A 30 HOH A 568 SITE 1 AC3 15 ILE A 31 GLU A 33 VAL A 39 ALA A 52 SITE 2 AC3 15 GLN A 105 ASP A 106 MET A 108 GLU A 109 SITE 3 AC3 15 LYS A 114 CYS A 166 ASP A 167 EDO A 404 SITE 4 AC3 15 HOH A 522 HOH A 571 HOH A 599 SITE 1 AC4 2 LYS A 114 6H3 A 403 SITE 1 AC5 3 LYS A 292 ILE A 302 HIS A 310 SITE 1 AC6 4 ARG A 67 ARG A 70 ARG A 172 HOH A 580 SITE 1 AC7 4 HIS A 61 GLN A 62 LYS A 340 HOH A 610 SITE 1 AC8 6 ARG A 91 ALA A 92 GLN A 97 MET A 98 SITE 2 AC8 6 LYS A 99 ASP A 100 SITE 1 AC9 5 LYS A 151 SER A 153 EDO A 410 EDO A 416 SITE 2 AC9 5 HOH A 646 SITE 1 AD1 4 LYS A 151 THR A 190 EDO A 409 HOH A 622 SITE 1 AD2 5 TYR A 139 ASN A 271 ALA A 325 GLU A 326 SITE 2 AD2 5 HOH A 537 SITE 1 AD3 2 ASN A 158 HOH A 637 SITE 1 AD4 3 SER A 122 ASN A 123 HOH A 518 SITE 1 AD5 4 LYS A 285 ASP A 288 HIS A 310 PRO A 311 SITE 1 AD6 5 SER A 142 ARG A 277 HOH A 501 HOH A 504 SITE 2 AD6 5 HOH A 506 SITE 1 AD7 4 LYS A 151 EDO A 409 HOH A 529 HOH A 629 SITE 1 AD8 2 LEU A 234 HOH A 620 CRYST1 91.751 91.751 99.305 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010899 0.006293 0.000000 0.00000 SCALE2 0.000000 0.012585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010070 0.00000