HEADER CELL CYCLE 04-APR-18 6G6Z TITLE EG5-INHIBITOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIF11; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KINESIN-LIKE PROTEIN 1,KINESIN-LIKE SPINDLE PROTEIN HKSP, COMPND 5 KINESIN-RELATED MOTOR PROTEIN EG5,THYROID RECEPTOR-INTERACTING COMPND 6 PROTEIN 5,TRIP-5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIF11, EG5, KNSL1, TRIP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EG5, KIF11, EG5-INHIBITOR, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.TALAPATRA,F.KOZIELSKI,C.L.THAM REVDAT 3 17-JAN-24 6G6Z 1 REMARK REVDAT 2 18-NOV-20 6G6Z 1 LINK REVDAT 1 08-AUG-18 6G6Z 0 JRNL AUTH S.K.TALAPATRA,C.L.THAM,P.GUGLIELMI,R.CIRILLI, JRNL AUTH 2 B.CHANDRASEKARAN,R.KARPOORMATH,S.CARRADORI,F.KOZIELSKI JRNL TITL CRYSTAL STRUCTURE OF THE EG5 - K858 COMPLEX AND IMPLICATIONS JRNL TITL 2 FOR STRUCTURE-BASED DESIGN OF THIADIAZOLE-CONTAINING JRNL TITL 3 INHIBITORS. JRNL REF EUR J MED CHEM V. 156 641 2018 JRNL REFN ISSN 1768-3254 JRNL PMID 30031975 JRNL DOI 10.1016/J.EJMECH.2018.07.006 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.KOZIELSKI,S.K.TALAPATRA,C.T.THAM REMARK 1 TITL EG5-INHIBITOR COMPLEX REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 14140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.360 REMARK 3 FREE R VALUE TEST SET COUNT : 758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4147 - 4.7867 1.00 2885 152 0.1939 0.2302 REMARK 3 2 4.7867 - 3.7998 1.00 2676 169 0.1892 0.2656 REMARK 3 3 3.7998 - 3.3196 0.99 2641 137 0.2690 0.4182 REMARK 3 4 3.3196 - 3.0162 1.00 2623 152 0.2669 0.3209 REMARK 3 5 3.0162 - 2.8000 0.98 2557 148 0.3300 0.3958 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2680 REMARK 3 ANGLE : 1.687 3636 REMARK 3 CHIRALITY : 0.076 429 REMARK 3 PLANARITY : 0.009 461 REMARK 3 DIHEDRAL : 4.531 2238 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1X88 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 5.5, 24.5% PEG 3350, 0.3 REMARK 280 M (NH4)2SO4, 0.1 M TRIMETHYLAMINE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.58133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.79067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.68600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.89533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 154.47667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 123.58133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 61.79067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.89533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.68600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 154.47667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 LYS A 15 REMARK 465 LYS A 34 REMARK 465 ALA A 35 REMARK 465 ILE A 272 REMARK 465 GLY A 273 REMARK 465 ARG A 274 REMARK 465 SER A 275 REMARK 465 GLY A 276 REMARK 465 ALA A 277 REMARK 465 VAL A 278 REMARK 465 ASP A 279 REMARK 465 LYS A 280 REMARK 465 ARG A 281 REMARK 465 ALA A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 GLY A 286 REMARK 465 ASN A 287 REMARK 465 GLN A 367 REMARK 465 LYS A 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 ARG A 33 CD NE CZ NH1 NH2 REMARK 470 GLU A 42 CD OE1 OE2 REMARK 470 ARG A 53 CD NE CZ NH1 NH2 REMARK 470 ASN A 122 CG OD1 ND2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 183 CG CD OE1 NE2 REMARK 470 LYS A 197 CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 220 CD CE NZ REMARK 470 GLU A 270 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 33 OG SER A 36 1.48 REMARK 500 O ALA A 219 OG1 THR A 222 1.71 REMARK 500 OG1 THR A 112 O HOH A 501 1.83 REMARK 500 NE2 GLN A 20 OG SER A 331 1.86 REMARK 500 OG1 THR A 112 O HOH A 502 2.00 REMARK 500 O ASP A 187 O ASN A 190 2.00 REMARK 500 OG SER A 314 OG1 THR A 317 2.00 REMARK 500 O GLN A 290 OG1 THR A 294 2.03 REMARK 500 OG SER A 240 OD1 ASN A 262 2.05 REMARK 500 OD2 ASP A 59 OG SER A 62 2.05 REMARK 500 OE1 GLU A 153 CE LYS A 246 2.10 REMARK 500 OE1 GLU A 247 O HOH A 503 2.11 REMARK 500 OG1 THR A 300 NH2 ARG A 355 2.14 REMARK 500 OG1 THR A 112 O HOH A 504 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 104 CE1 TYR A 104 CZ -0.080 REMARK 500 MET A 245 CA MET A 245 C 0.482 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 174 C - N - CA ANGL. DEV. = 18.9 DEGREES REMARK 500 PRO A 174 C - N - CD ANGL. DEV. = -18.7 DEGREES REMARK 500 ASP A 177 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 PRO A 188 C - N - CA ANGL. DEV. = 21.0 DEGREES REMARK 500 PRO A 188 C - N - CD ANGL. DEV. = -20.2 DEGREES REMARK 500 MET A 245 CA - C - O ANGL. DEV. = 107.4 DEGREES REMARK 500 PRO A 338 C - N - CA ANGL. DEV. = 17.9 DEGREES REMARK 500 PRO A 338 C - N - CD ANGL. DEV. = -19.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 17 14.12 -143.25 REMARK 500 ASN A 18 144.81 72.04 REMARK 500 LYS A 60 -22.77 47.84 REMARK 500 ASN A 122 76.00 57.26 REMARK 500 GLU A 123 36.07 5.16 REMARK 500 THR A 152 145.37 77.66 REMARK 500 ALA A 230 53.49 38.63 REMARK 500 TYR A 231 -83.04 -52.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 245 -10.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 112 OG1 REMARK 620 2 ADP A 401 O3B 61.3 REMARK 620 3 HOH A 501 O 50.0 68.4 REMARK 620 4 HOH A 502 O 56.2 80.3 106.1 REMARK 620 5 HOH A 504 O 61.7 122.6 71.2 73.7 REMARK 620 6 HOH A 515 O 137.6 88.9 147.7 91.7 140.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOK A 403 DBREF 6G6Z A 1 368 UNP P52732 KIF11_HUMAN 1 368 SEQADV 6G6Z GLY A -1 UNP P52732 EXPRESSION TAG SEQADV 6G6Z PRO A 0 UNP P52732 EXPRESSION TAG SEQRES 1 A 370 GLY PRO MET ALA SER GLN PRO ASN SER SER ALA LYS LYS SEQRES 2 A 370 LYS GLU GLU LYS GLY LYS ASN ILE GLN VAL VAL VAL ARG SEQRES 3 A 370 CYS ARG PRO PHE ASN LEU ALA GLU ARG LYS ALA SER ALA SEQRES 4 A 370 HIS SER ILE VAL GLU CYS ASP PRO VAL ARG LYS GLU VAL SEQRES 5 A 370 SER VAL ARG THR GLY GLY LEU ALA ASP LYS SER SER ARG SEQRES 6 A 370 LYS THR TYR THR PHE ASP MET VAL PHE GLY ALA SER THR SEQRES 7 A 370 LYS GLN ILE ASP VAL TYR ARG SER VAL VAL CYS PRO ILE SEQRES 8 A 370 LEU ASP GLU VAL ILE MET GLY TYR ASN CYS THR ILE PHE SEQRES 9 A 370 ALA TYR GLY GLN THR GLY THR GLY LYS THR PHE THR MET SEQRES 10 A 370 GLU GLY GLU ARG SER PRO ASN GLU GLU TYR THR TRP GLU SEQRES 11 A 370 GLU ASP PRO LEU ALA GLY ILE ILE PRO ARG THR LEU HIS SEQRES 12 A 370 GLN ILE PHE GLU LYS LEU THR ASP ASN GLY THR GLU PHE SEQRES 13 A 370 SER VAL LYS VAL SER LEU LEU GLU ILE TYR ASN GLU GLU SEQRES 14 A 370 LEU PHE ASP LEU LEU ASN PRO SER SER ASP VAL SER GLU SEQRES 15 A 370 ARG LEU GLN MET PHE ASP ASP PRO ARG ASN LYS ARG GLY SEQRES 16 A 370 VAL ILE ILE LYS GLY LEU GLU GLU ILE THR VAL HIS ASN SEQRES 17 A 370 LYS ASP GLU VAL TYR GLN ILE LEU GLU LYS GLY ALA ALA SEQRES 18 A 370 LYS ARG THR THR ALA ALA THR LEU MET ASN ALA TYR SER SEQRES 19 A 370 SER ARG SER HIS SER VAL PHE SER VAL THR ILE HIS MET SEQRES 20 A 370 LYS GLU THR THR ILE ASP GLY GLU GLU LEU VAL LYS ILE SEQRES 21 A 370 GLY LYS LEU ASN LEU VAL ASP LEU ALA GLY SER GLU ASN SEQRES 22 A 370 ILE GLY ARG SER GLY ALA VAL ASP LYS ARG ALA ARG GLU SEQRES 23 A 370 ALA GLY ASN ILE ASN GLN SER LEU LEU THR LEU GLY ARG SEQRES 24 A 370 VAL ILE THR ALA LEU VAL GLU ARG THR PRO HIS VAL PRO SEQRES 25 A 370 TYR ARG GLU SER LYS LEU THR ARG ILE LEU GLN ASP SER SEQRES 26 A 370 LEU GLY GLY ARG THR ARG THR SER ILE ILE ALA THR ILE SEQRES 27 A 370 SER PRO ALA SER LEU ASN LEU GLU GLU THR LEU SER THR SEQRES 28 A 370 LEU GLU TYR ALA HIS ARG ALA LYS ASN ILE LEU ASN LYS SEQRES 29 A 370 PRO GLU VAL ASN GLN LYS HET ADP A 401 27 HET MG A 402 1 HET EOK A 403 19 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EOK (~{N}~{Z})-~{N}-[(5~{S})-4-ETHANOYL-5-METHYL-5-PHENYL- HETNAM 2 EOK 1,3,4-THIADIAZOLIDIN-2-YLIDENE]ETHANAMIDE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 EOK C13 H15 N3 O2 S FORMUL 5 HOH *41(H2 O) HELIX 1 AA1 GLY A 55 ASP A 59 5 5 HELIX 2 AA2 LYS A 77 VAL A 85 1 9 HELIX 3 AA3 VAL A 85 MET A 95 1 11 HELIX 4 AA4 GLY A 110 GLU A 116 1 7 HELIX 5 AA5 GLY A 134 ASP A 149 1 16 HELIX 6 AA6 ASN A 206 ASP A 208 5 3 HELIX 7 AA7 GLU A 209 THR A 226 1 18 HELIX 8 AA8 ALA A 230 SER A 235 1 6 HELIX 9 AA9 ASN A 289 ARG A 305 1 17 HELIX 10 AB1 PRO A 310 GLU A 313 5 4 HELIX 11 AB2 SER A 314 LEU A 320 1 7 HELIX 12 AB3 ALA A 339 LEU A 341 5 3 HELIX 13 AB4 ASN A 342 LYS A 357 1 16 SHEET 1 AA1 8 MET A 70 PHE A 72 0 SHEET 2 AA1 8 GLN A 20 CYS A 25 1 N VAL A 23 O PHE A 72 SHEET 3 AA1 8 ARG A 329 ILE A 336 1 O ILE A 332 N GLN A 20 SHEET 4 AA1 8 ASN A 98 GLY A 105 1 N PHE A 102 O ILE A 333 SHEET 5 AA1 8 ILE A 258 ASP A 265 1 O ASN A 262 N CYS A 99 SHEET 6 AA1 8 HIS A 236 HIS A 244 -1 N ILE A 243 O GLY A 259 SHEET 7 AA1 8 SER A 155 TYR A 164 -1 N ILE A 163 O HIS A 236 SHEET 8 AA1 8 GLU A 167 ASP A 170 -1 O PHE A 169 N GLU A 162 SHEET 1 AA2 8 MET A 70 PHE A 72 0 SHEET 2 AA2 8 GLN A 20 CYS A 25 1 N VAL A 23 O PHE A 72 SHEET 3 AA2 8 ARG A 329 ILE A 336 1 O ILE A 332 N GLN A 20 SHEET 4 AA2 8 ASN A 98 GLY A 105 1 N PHE A 102 O ILE A 333 SHEET 5 AA2 8 ILE A 258 ASP A 265 1 O ASN A 262 N CYS A 99 SHEET 6 AA2 8 HIS A 236 HIS A 244 -1 N ILE A 243 O GLY A 259 SHEET 7 AA2 8 SER A 155 TYR A 164 -1 N ILE A 163 O HIS A 236 SHEET 8 AA2 8 ILE A 202 VAL A 204 -1 O ILE A 202 N VAL A 158 SHEET 1 AA3 3 VAL A 41 ASP A 44 0 SHEET 2 AA3 3 GLU A 49 ARG A 53 -1 O SER A 51 N GLU A 42 SHEET 3 AA3 3 ARG A 63 THR A 67 -1 O LYS A 64 N VAL A 52 SHEET 1 AA4 2 GLN A 183 ASP A 187 0 SHEET 2 AA4 2 GLY A 193 LYS A 197 -1 O LYS A 197 N GLN A 183 SHEET 1 AA5 2 GLU A 247 THR A 248 0 SHEET 2 AA5 2 GLU A 254 LEU A 255 -1 O LEU A 255 N GLU A 247 LINK OG1 THR A 112 MG MG A 402 1555 1555 2.30 LINK O3B ADP A 401 MG MG A 402 1555 1555 2.31 LINK MG MG A 402 O HOH A 501 1555 1555 1.98 LINK MG MG A 402 O HOH A 502 1555 1555 1.86 LINK MG MG A 402 O HOH A 504 1555 1555 1.89 LINK MG MG A 402 O HOH A 515 1555 1555 2.95 CISPEP 1 GLY A 16 LYS A 17 0 -6.83 SITE 1 AC1 15 ARG A 24 ARG A 26 PRO A 27 GLN A 106 SITE 2 AC1 15 GLY A 108 THR A 109 GLY A 110 LYS A 111 SITE 3 AC1 15 THR A 112 PHE A 113 GLU A 118 MG A 402 SITE 4 AC1 15 HOH A 501 HOH A 502 HOH A 508 SITE 1 AC2 6 THR A 112 ADP A 401 HOH A 501 HOH A 502 SITE 2 AC2 6 HOH A 504 HOH A 515 SITE 1 AC3 10 GLU A 116 GLY A 117 GLU A 118 ARG A 119 SITE 2 AC3 10 ALA A 133 LEU A 160 TYR A 211 LEU A 214 SITE 3 AC3 10 GLU A 215 ARG A 221 CRYST1 100.295 100.295 185.372 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009971 0.005757 0.000000 0.00000 SCALE2 0.000000 0.011513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005395 0.00000