HEADER TRANSFERASE 06-APR-18 6G7S OBSLTE 15-FEB-23 6G7S 6QMI TITLE PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS TITLE 2 IN COMPLEX WITH 3-(1H-INDOL-1-YL)PROPANOIC ACID AT 1.7A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEPHOSPHO-COA PYROPHOSPHORYLASE,PANTETHEINE-PHOSPHATE COMPND 5 ADENYLYLTRANSFERASE,PPAT; COMPND 6 EC: 2.7.7.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 GENE: COAD, KDTB, RV2965C, MTCY349.22, U0002E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COAD, PPAT, TRANSFERASE, COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.BLASZCZYK,T.L.BLUNDELL REVDAT 2 15-FEB-23 6G7S 1 OBSLTE REVDAT 1 24-APR-19 6G7S 0 JRNL AUTH M.BLASZCZYK,J.EL BAKALI,J.A.BOLAND,C.SPRY,M.DIAS, JRNL AUTH 2 T.L.BLUNDELL,C.ABEL JRNL TITL FRAGMENT LINKING APPLIED TO THE DISCOVERY OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE JRNL TITL 3 INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.8308 - 3.3879 1.00 2886 139 0.1791 0.1964 REMARK 3 2 3.3879 - 2.6890 1.00 2793 143 0.2012 0.2275 REMARK 3 3 2.6890 - 2.3491 1.00 2763 154 0.2003 0.2608 REMARK 3 4 2.3491 - 2.1343 1.00 2744 149 0.1840 0.2266 REMARK 3 5 2.1343 - 1.9813 1.00 2734 161 0.2016 0.2326 REMARK 3 6 1.9813 - 1.8645 1.00 2750 143 0.2304 0.2564 REMARK 3 7 1.8645 - 1.7711 1.00 2730 157 0.2716 0.2957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1195 REMARK 3 ANGLE : 1.192 1615 REMARK 3 CHIRALITY : 0.074 186 REMARK 3 PLANARITY : 0.005 210 REMARK 3 DIHEDRAL : 16.653 435 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9457 76.8363 13.9705 REMARK 3 T TENSOR REMARK 3 T11: 0.3127 T22: 0.4202 REMARK 3 T33: 0.4583 T12: -0.0206 REMARK 3 T13: -0.2255 T23: 0.1178 REMARK 3 L TENSOR REMARK 3 L11: 0.1622 L22: 1.7142 REMARK 3 L33: 0.7710 L12: -0.3552 REMARK 3 L13: 0.1058 L23: 0.4606 REMARK 3 S TENSOR REMARK 3 S11: 0.1730 S12: -0.3034 S13: -0.2861 REMARK 3 S21: 0.4199 S22: -0.0715 S23: -0.9448 REMARK 3 S31: 0.1205 S32: 0.3183 S33: 0.4061 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7259 84.2328 12.2453 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.3753 REMARK 3 T33: 0.4038 T12: 0.0389 REMARK 3 T13: -0.1695 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.0990 L22: 0.1868 REMARK 3 L33: 0.4177 L12: 0.0073 REMARK 3 L13: -0.1319 L23: 0.1494 REMARK 3 S TENSOR REMARK 3 S11: -0.2303 S12: -0.4299 S13: 0.0787 REMARK 3 S21: 0.4184 S22: 0.1403 S23: -0.3026 REMARK 3 S31: 0.1058 S32: 0.2045 S33: -0.0705 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1666 91.7569 6.4935 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.2977 REMARK 3 T33: 0.2927 T12: 0.0201 REMARK 3 T13: -0.0706 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.0755 L22: 0.0451 REMARK 3 L33: 0.0327 L12: -0.0124 REMARK 3 L13: -0.0567 L23: 0.0207 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: -0.1376 S13: 0.2066 REMARK 3 S21: 0.4184 S22: 0.0785 S23: -0.2070 REMARK 3 S31: 0.0626 S32: 0.0465 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6277 65.9080 16.4823 REMARK 3 T TENSOR REMARK 3 T11: 0.4270 T22: 0.3399 REMARK 3 T33: 0.4525 T12: 0.0246 REMARK 3 T13: -0.1779 T23: 0.2285 REMARK 3 L TENSOR REMARK 3 L11: 0.6530 L22: 0.7480 REMARK 3 L33: 0.2117 L12: 0.4789 REMARK 3 L13: 0.3231 L23: 0.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.1367 S12: -0.1722 S13: -0.8859 REMARK 3 S21: 0.2527 S22: 0.0667 S23: -0.6455 REMARK 3 S31: 0.2977 S32: 0.2351 S33: 0.2385 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.771 REMARK 200 RESOLUTION RANGE LOW (A) : 67.781 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 27.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.80 REMARK 200 R MERGE FOR SHELL (I) : 1.48600 REMARK 200 R SYM FOR SHELL (I) : 1.48600 REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TFU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, COHEXAMINE CHLORIDE, REMARK 280 CACODYLATE/TRIS, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 48.97550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.27602 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.57633 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 48.97550 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.27602 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.57633 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 48.97550 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.27602 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.57633 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 48.97550 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.27602 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.57633 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 48.97550 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.27602 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.57633 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 48.97550 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.27602 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.57633 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.55204 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 75.15267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 56.55204 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 75.15267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 56.55204 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 75.15267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 56.55204 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.15267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 56.55204 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 75.15267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 56.55204 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 75.15267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 169.65611 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -146.92650 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 84.82805 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -146.92650 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 84.82805 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 169.65611 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S DMS A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 312 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 331 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 VAL A 37 REMARK 465 ASN A 38 REMARK 465 PRO A 39 REMARK 465 ALA A 40 REMARK 465 LYS A 41 REMARK 465 THR A 42 REMARK 465 THR A 158 REMARK 465 GLU A 159 REMARK 465 ARG A 160 REMARK 465 THR A 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 71 N - CA - C ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 155 43.71 -77.39 REMARK 500 LEU A 156 -42.39 -143.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 70 GLY A 71 -131.71 REMARK 500 GLY A 71 LEU A 72 132.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EQ5 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 202 DBREF 6G7S A 1 161 UNP P9WPA5 COAD_MYCTU 1 161 SEQADV 6G7S GLY A -1 UNP P9WPA5 EXPRESSION TAG SEQADV 6G7S SER A 0 UNP P9WPA5 EXPRESSION TAG SEQRES 1 A 163 GLY SER MET THR GLY ALA VAL CYS PRO GLY SER PHE ASP SEQRES 2 A 163 PRO VAL THR LEU GLY HIS VAL ASP ILE PHE GLU ARG ALA SEQRES 3 A 163 ALA ALA GLN PHE ASP GLU VAL VAL VAL ALA ILE LEU VAL SEQRES 4 A 163 ASN PRO ALA LYS THR GLY MET PHE ASP LEU ASP GLU ARG SEQRES 5 A 163 ILE ALA MET VAL LYS GLU SER THR THR HIS LEU PRO ASN SEQRES 6 A 163 LEU ARG VAL GLN VAL GLY HIS GLY LEU VAL VAL ASP PHE SEQRES 7 A 163 VAL ARG SER CYS GLY MET THR ALA ILE VAL LYS GLY LEU SEQRES 8 A 163 ARG THR GLY THR ASP PHE GLU TYR GLU LEU GLN MET ALA SEQRES 9 A 163 GLN MET ASN LYS HIS ILE ALA GLY VAL ASP THR PHE PHE SEQRES 10 A 163 VAL ALA THR ALA PRO ARG TYR SER PHE VAL SER SER SER SEQRES 11 A 163 LEU ALA LYS GLU VAL ALA MET LEU GLY GLY ASP VAL SER SEQRES 12 A 163 GLU LEU LEU PRO GLU PRO VAL ASN ARG ARG LEU ARG ASP SEQRES 13 A 163 ARG LEU ASN THR GLU ARG THR HET EQ5 A 201 24 HET DMS A 202 10 HETNAM EQ5 3-INDOL-1-YLPROPANOIC ACID HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 EQ5 C11 H11 N O2 FORMUL 3 DMS C2 H6 O S FORMUL 4 HOH *39(H2 O) HELIX 1 AA1 THR A 14 PHE A 28 1 15 HELIX 2 AA2 ASP A 46 THR A 58 1 13 HELIX 3 AA3 LEU A 72 CYS A 80 1 9 HELIX 4 AA4 ASP A 94 GLY A 110 1 17 HELIX 5 AA5 ALA A 119 SER A 123 5 5 HELIX 6 AA6 SER A 126 LEU A 136 1 11 HELIX 7 AA7 VAL A 140 LEU A 144 5 5 HELIX 8 AA8 PRO A 145 ARG A 155 1 11 SHEET 1 AA1 5 LEU A 64 VAL A 68 0 SHEET 2 AA1 5 GLU A 30 ILE A 35 1 N VAL A 33 O ARG A 65 SHEET 3 AA1 5 GLY A 3 GLY A 8 1 N CYS A 6 O VAL A 32 SHEET 4 AA1 5 ALA A 84 LEU A 89 1 O VAL A 86 N VAL A 5 SHEET 5 AA1 5 ASP A 112 ALA A 117 1 O PHE A 114 N ILE A 85 CISPEP 1 ASP A 11 PRO A 12 0 0.98 SITE 1 AC1 9 PRO A 7 GLY A 8 SER A 9 PHE A 10 SITE 2 AC1 9 HIS A 17 ILE A 20 GLY A 88 ARG A 90 SITE 3 AC1 9 THR A 118 SITE 1 AC2 1 HOH A 336 CRYST1 97.951 97.951 112.729 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010209 0.005894 0.000000 0.00000 SCALE2 0.000000 0.011789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008871 0.00000