HEADER SIGNALING PROTEIN 09-APR-18 6G8O TITLE SOLUTION STRUCTURE OF THE CROSS-LINKED SAM DOMAIN DIMER OF MURINE SLY1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM AND SH3 DOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SAM DOMAIN, UNP RESIDUES 253-321; COMPND 5 SYNONYM: SH3 PROTEIN EXPRESSED IN LYMPHOCYTES; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THE TWO CHAINS A AND B ARE CROSS-LINKED BY AN COMPND 9 ARTIFICIAL INTERMONOMER DISULFIDE BOND AT POSITION 68 (320) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SASH3, SLY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SLY1, SAM, ADAPTER PROTEIN, SCAFFOLD PROTEIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR L.K.KUKUK,A.J.DINGLEY,B.W.KOENIG REVDAT 3 14-JUN-23 6G8O 1 REMARK SSBOND REVDAT 2 08-MAY-19 6G8O 1 REMARK REVDAT 1 30-JAN-19 6G8O 0 JRNL AUTH L.KUKUK,A.J.DINGLEY,J.GRANZIN,L.NAGEL-STEGER, JRNL AUTH 2 P.THIAGARAJAN-ROSENKRANZ,D.CIUPKA,K.HANEL, JRNL AUTH 3 R.BATRA-SAFFERLING,V.PACHECO,M.STOLDT,K.PFEFFER, JRNL AUTH 4 S.BEER-HAMMER,D.WILLBOLD,B.W.KOENIG JRNL TITL STRUCTURE OF THE SLY1 SAM HOMODIMER REVEALS A NEW INTERFACE JRNL TITL 2 FOR SAM DOMAIN SELF-ASSOCIATION. JRNL REF SCI REP V. 9 54 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30631134 JRNL DOI 10.1038/S41598-018-37185-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009291. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 0.098 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 1.4 MM [U-99% 13C; U-99% 15N] REMARK 210 SLY1 SAM DOMAIN, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 20 MM NACL, 0.2 MM REMARK 210 EDTA, 0.03 % SODIUM AZIDE, 93% REMARK 210 H2O/7% D2O; 0.8 MM [U-99% 13C; U- REMARK 210 99% 15N] SLY1 SAM DOMAIN, 0.8 MM REMARK 210 SLY1 SAM DOMAIN, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 20 MM SODIUM CHLORIDE, REMARK 210 0.2 MM EDTA, 0.03 % SODIUM REMARK 210 AZIDE, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D C(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, CCPNMR REMARK 210 ANALYSIS, ARIA, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 60 H TYR A 64 1.57 REMARK 500 O LEU B 60 H TYR B 64 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 47 102.78 -59.05 REMARK 500 1 TYR A 64 44.79 -100.01 REMARK 500 1 ASP A 65 41.99 -82.12 REMARK 500 1 CYS A 68 169.97 64.34 REMARK 500 1 ASP B 47 102.83 -58.77 REMARK 500 1 TYR B 64 44.68 -100.59 REMARK 500 1 ASP B 65 41.61 -81.59 REMARK 500 1 CYS B 68 169.38 64.17 REMARK 500 2 ASP A 47 104.95 -57.54 REMARK 500 2 TYR A 64 52.69 -99.69 REMARK 500 2 ASP A 65 48.04 -79.95 REMARK 500 2 CYS A 68 171.27 62.36 REMARK 500 2 ASP B 47 104.97 -57.37 REMARK 500 2 TYR B 64 52.54 -100.05 REMARK 500 2 ASP B 65 48.00 -79.58 REMARK 500 2 CYS B 68 171.07 62.11 REMARK 500 3 ASP A 47 108.49 -57.44 REMARK 500 3 TYR A 64 51.48 -99.03 REMARK 500 3 ASP A 65 33.79 -86.09 REMARK 500 3 CYS A 68 172.66 61.94 REMARK 500 3 ASP B 47 108.32 -57.50 REMARK 500 3 TYR B 64 51.45 -98.94 REMARK 500 3 ASP B 65 33.46 -85.65 REMARK 500 3 CYS B 68 172.34 61.76 REMARK 500 4 ASP A 47 105.16 -55.33 REMARK 500 4 TYR A 64 52.90 -96.97 REMARK 500 4 ASP A 65 43.50 -78.01 REMARK 500 4 CYS A 68 166.04 63.58 REMARK 500 4 ASP B 47 105.06 -55.10 REMARK 500 4 TYR B 64 52.93 -96.67 REMARK 500 4 ASP B 65 43.24 -77.77 REMARK 500 4 CYS B 68 165.78 63.49 REMARK 500 5 TYR A 64 48.41 -100.05 REMARK 500 5 ASP A 65 37.06 -80.68 REMARK 500 5 CYS A 68 159.73 65.81 REMARK 500 5 TYR B 64 48.47 -100.05 REMARK 500 5 ASP B 65 37.41 -80.98 REMARK 500 5 CYS B 68 159.49 65.73 REMARK 500 6 ASP A 47 102.92 -58.87 REMARK 500 6 TYR A 64 48.83 -83.74 REMARK 500 6 ASP A 65 47.47 -80.96 REMARK 500 6 CYS A 68 164.91 63.32 REMARK 500 6 ASP B 47 102.89 -58.24 REMARK 500 6 TYR B 64 48.70 -84.13 REMARK 500 6 ASP B 65 47.27 -80.82 REMARK 500 6 CYS B 68 164.65 63.61 REMARK 500 7 TYR A 64 48.54 -107.05 REMARK 500 7 ASP A 65 35.63 -79.37 REMARK 500 7 CYS A 68 161.63 62.71 REMARK 500 7 ASP B 47 109.91 -59.71 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FXF RELATED DB: PDB REMARK 900 RELATED ID: 27432 RELATED DB: BMRB DBREF 6G8O A 2 69 UNP Q8K352 SASH3_MOUSE 254 321 DBREF 6G8O B 2 69 UNP Q8K352 SASH3_MOUSE 254 321 SEQADV 6G8O GLY A 1 UNP Q8K352 EXPRESSION TAG SEQADV 6G8O CYS A 68 UNP Q8K352 SER 320 ENGINEERED MUTATION SEQADV 6G8O GLY B 1 UNP Q8K352 EXPRESSION TAG SEQADV 6G8O CYS B 68 UNP Q8K352 SER 320 ENGINEERED MUTATION SEQRES 1 A 69 GLY PRO LYS THR LEU HIS GLU LEU LEU GLU ARG ILE GLY SEQRES 2 A 69 LEU GLU GLU HIS THR SER THR LEU LEU LEU ASN GLY TYR SEQRES 3 A 69 GLN THR LEU GLU ASP PHE LYS GLU LEU ARG GLU THR HIS SEQRES 4 A 69 LEU ASN GLU LEU ASN ILE MET ASP PRO GLN HIS ARG ALA SEQRES 5 A 69 LYS LEU LEU THR ALA ALA GLU LEU LEU LEU ASP TYR ASP SEQRES 6 A 69 THR GLY CYS GLU SEQRES 1 B 69 GLY PRO LYS THR LEU HIS GLU LEU LEU GLU ARG ILE GLY SEQRES 2 B 69 LEU GLU GLU HIS THR SER THR LEU LEU LEU ASN GLY TYR SEQRES 3 B 69 GLN THR LEU GLU ASP PHE LYS GLU LEU ARG GLU THR HIS SEQRES 4 B 69 LEU ASN GLU LEU ASN ILE MET ASP PRO GLN HIS ARG ALA SEQRES 5 B 69 LYS LEU LEU THR ALA ALA GLU LEU LEU LEU ASP TYR ASP SEQRES 6 B 69 THR GLY CYS GLU HELIX 1 AA1 THR A 4 GLY A 13 1 10 HELIX 2 AA2 LEU A 14 GLU A 16 5 3 HELIX 3 AA3 HIS A 17 ASN A 24 1 8 HELIX 4 AA4 THR A 28 LYS A 33 1 6 HELIX 5 AA5 ARG A 36 ASN A 44 1 9 HELIX 6 AA6 ASP A 47 TYR A 64 1 18 HELIX 7 AA7 THR B 4 GLY B 13 1 10 HELIX 8 AA8 LEU B 14 GLU B 16 5 3 HELIX 9 AA9 HIS B 17 ASN B 24 1 8 HELIX 10 AB1 THR B 28 LYS B 33 1 6 HELIX 11 AB2 ARG B 36 ASN B 44 1 9 HELIX 12 AB3 ASP B 47 TYR B 64 1 18 SSBOND 1 CYS A 68 CYS B 68 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1