HEADER ONCOPROTEIN 09-APR-18 6G8P TITLE 14-3-3SIGMA IN COMPLEX WITH A P129BETA3P AND L132BETA3L MUTATED YAP TITLE 2 PS127 PHOSPHOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSCRIPTIONAL COACTIVATOR YAP1; COMPND 8 CHAIN: P; COMPND 9 FRAGMENT: UNP RESIDUES 124-133; COMPND 10 SYNONYM: YES-ASSOCIATED PROTEIN 1,PROTEIN YORKIE HOMOLOG,YES- COMPND 11 ASSOCIATED PROTEIN YAP65 HOMOLOG; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: EOE AND B3L ARE BETA3-AMINO ACID MUTATIONS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS BETA AMINO ACID, HIPPO PATHWAY, YAP/TAZ, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ANDREI,V.THIJSSEN,L.BRUNSVELD,C.OTTMANN,L.G.MILROY REVDAT 5 17-JAN-24 6G8P 1 REMARK REVDAT 4 15-NOV-23 6G8P 1 REMARK LINK ATOM REVDAT 3 18-DEC-19 6G8P 1 JRNL REVDAT 2 04-DEC-19 6G8P 1 JRNL REVDAT 1 17-APR-19 6G8P 0 JRNL AUTH S.A.ANDREI,V.THIJSSEN,L.BRUNSVELD,C.OTTMANN,L.G.MILROY JRNL TITL A STUDY ON THE EFFECT OF SYNTHETIC ALPHA-TO-BETA3-AMINO ACID JRNL TITL 2 MUTATIONS ON THE BINDING OF PHOSPHOPEPTIDES TO 14-3-3 JRNL TITL 3 PROTEINS. JRNL REF CHEM.COMMUN.(CAMB.) V. 55 14809 2019 JRNL REFN ESSN 1364-548X JRNL PMID 31763628 JRNL DOI 10.1039/C9CC07982C REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6016 - 3.7992 1.00 2866 154 0.1543 0.1566 REMARK 3 2 3.7992 - 3.0158 1.00 2734 145 0.1262 0.1389 REMARK 3 3 3.0158 - 2.6347 1.00 2736 148 0.1410 0.1799 REMARK 3 4 2.6347 - 2.3938 1.00 2699 141 0.1215 0.1506 REMARK 3 5 2.3938 - 2.2222 1.00 2702 132 0.1153 0.1440 REMARK 3 6 2.2222 - 2.0912 1.00 2699 149 0.1200 0.1759 REMARK 3 7 2.0912 - 1.9865 1.00 2645 169 0.1263 0.1714 REMARK 3 8 1.9865 - 1.9000 0.97 2599 143 0.1414 0.1792 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8215 -10.7776 0.5812 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0764 REMARK 3 T33: 0.0967 T12: -0.0039 REMARK 3 T13: 0.0012 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.4856 L22: 1.3786 REMARK 3 L33: 1.0288 L12: -0.1810 REMARK 3 L13: 0.4034 L23: -0.5295 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: 0.0001 S13: 0.0376 REMARK 3 S21: 0.0013 S22: 0.0609 S23: 0.0569 REMARK 3 S31: 0.0055 S32: -0.0391 S33: 0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5041 11.6251 -27.8111 REMARK 3 T TENSOR REMARK 3 T11: 0.6001 T22: 0.4321 REMARK 3 T33: 0.4139 T12: 0.0916 REMARK 3 T13: -0.1100 T23: 0.1271 REMARK 3 L TENSOR REMARK 3 L11: 1.8316 L22: 0.2137 REMARK 3 L33: 0.9423 L12: -0.6256 REMARK 3 L13: 0.9043 L23: -0.3287 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: 0.5001 S13: 0.4334 REMARK 3 S21: -0.6687 S22: 0.2401 S23: 0.6798 REMARK 3 S31: -0.3186 S32: -0.5790 S33: -0.0385 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3424 -14.8718 -10.3289 REMARK 3 T TENSOR REMARK 3 T11: 0.0763 T22: 0.1030 REMARK 3 T33: 0.0870 T12: -0.0260 REMARK 3 T13: 0.0008 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.4117 L22: 2.1022 REMARK 3 L33: 0.7690 L12: 0.0238 REMARK 3 L13: 0.0549 L23: -0.4702 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: 0.0267 S13: -0.0366 REMARK 3 S21: -0.1863 S22: 0.0381 S23: -0.0974 REMARK 3 S31: 0.0396 S32: 0.0394 S33: 0.0037 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1721 -27.0878 -16.0835 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.1115 REMARK 3 T33: 0.0997 T12: 0.0002 REMARK 3 T13: 0.0077 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.3838 L22: 3.2788 REMARK 3 L33: 3.4216 L12: 1.4979 REMARK 3 L13: -1.1330 L23: -2.1009 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: 0.1226 S13: -0.1814 REMARK 3 S21: -0.3221 S22: 0.0032 S23: -0.1690 REMARK 3 S31: 0.1868 S32: 0.1253 S33: 0.0394 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4590 -25.9129 -12.2695 REMARK 3 T TENSOR REMARK 3 T11: 0.1112 T22: 0.1468 REMARK 3 T33: 0.1378 T12: -0.0321 REMARK 3 T13: -0.0066 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.1884 L22: 0.4716 REMARK 3 L33: 1.2650 L12: 0.4706 REMARK 3 L13: -0.2113 L23: -0.1722 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0189 S13: 0.0339 REMARK 3 S21: -0.0387 S22: 0.0452 S23: 0.0853 REMARK 3 S31: 0.0442 S32: -0.1159 S33: -0.0270 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8649 -20.6132 -6.4680 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1894 REMARK 3 T33: 0.1778 T12: 0.0178 REMARK 3 T13: -0.0012 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.5810 L22: 3.8375 REMARK 3 L33: 5.5881 L12: 0.1837 REMARK 3 L13: -0.3516 L23: -3.5505 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: -0.0515 S13: 0.1144 REMARK 3 S21: 0.3180 S22: 0.0365 S23: 0.0878 REMARK 3 S31: -0.4522 S32: -0.4255 S33: -0.0497 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 125 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3041 -14.3131 -9.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1906 REMARK 3 T33: 0.2086 T12: -0.0047 REMARK 3 T13: 0.0110 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 5.1433 L22: 4.0218 REMARK 3 L33: 6.8550 L12: 1.5185 REMARK 3 L13: 0.3352 L23: -1.3507 REMARK 3 S TENSOR REMARK 3 S11: -0.1027 S12: 0.0027 S13: 0.1504 REMARK 3 S21: -0.1414 S22: 0.0167 S23: 0.3723 REMARK 3 S31: -0.4275 S32: -0.5303 S33: 0.0549 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22902 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 66.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.18200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 3MHR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095 M HEPES, PH 7.1, 29% PEG 400, REMARK 280 0.19 M CACL2, 5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.01850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.74950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.01850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.74950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.23000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.01850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.74950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.23000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.01850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.74950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 731 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 734 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE P 123 REMARK 465 ARG P 124 REMARK 465 ALA P 135 REMARK 465 SER P 136 REMARK 465 B3L P 137 REMARK 465 GLN P 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 640 O HOH A 654 1.91 REMARK 500 O HOH P 205 O HOH P 206 1.98 REMARK 500 O HOH A 548 O HOH A 703 1.98 REMARK 500 OE1 GLU A 110 O HOH A 401 2.04 REMARK 500 OD2 ASP A 211 O HOH A 402 2.06 REMARK 500 O HOH A 648 O HOH A 671 2.09 REMARK 500 O HOH A 682 O HOH A 696 2.09 REMARK 500 O HOH A 690 O HOH A 723 2.12 REMARK 500 O HOH A 645 O HOH A 647 2.12 REMARK 500 OG SER A 177 O HOH A 403 2.13 REMARK 500 OE1 GLU A 86 O HOH A 404 2.13 REMARK 500 OE2 GLU A 91 O HOH A 405 2.15 REMARK 500 O HOH A 413 O HOH A 428 2.16 REMARK 500 O HOH A 559 O HOH A 573 2.17 REMARK 500 OD1 ASP A 139 O HOH A 406 2.17 REMARK 500 O HOH A 651 O HOH A 703 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 603 O HOH A 632 3655 1.99 REMARK 500 O HOH A 646 O HOH A 733 8545 2.08 REMARK 500 O HOH A 520 O HOH A 616 4555 2.13 REMARK 500 O HOH A 658 O HOH A 687 6544 2.17 REMARK 500 O HOH A 654 O HOH A 687 3655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER P 128 O - C - N ANGL. DEV. = -11.1 DEGREES REMARK 500 EOE P 134 C - N - CA ANGL. DEV. = -26.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 77.97 -104.62 REMARK 500 HIS A 106 37.63 -146.88 REMARK 500 THR A 136 -6.32 -142.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER P 128 EOE P 134 144.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 734 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 736 DISTANCE = 7.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 GLU A 2 OE1 0.0 REMARK 620 3 HOH A 466 O 71.2 71.2 REMARK 620 4 HOH A 466 O 75.1 75.1 144.7 REMARK 620 5 HOH A 640 O 70.4 70.4 116.1 59.9 REMARK 620 6 HOH A 640 O 140.4 140.4 69.2 143.4 129.1 REMARK 620 7 HOH A 654 O 73.3 73.3 83.4 97.0 37.5 102.1 REMARK 620 8 HOH A 654 O 171.4 171.4 117.2 96.9 103.1 48.1 105.1 REMARK 620 9 HOH A 687 O 124.9 124.9 131.8 77.2 54.5 83.5 64.0 48.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE2 49.9 REMARK 620 3 GLU A 110 O 85.4 84.7 REMARK 620 4 GLU A 188 OE2 120.2 87.3 45.8 REMARK 620 5 HOH A 534 O 117.9 84.6 45.3 2.7 REMARK 620 6 HOH A 536 O 120.1 84.5 49.2 4.6 3.9 REMARK 620 7 HOH A 614 O 118.5 83.1 48.3 5.1 3.5 1.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6G8I RELATED DB: PDB REMARK 900 SIMILAR STRUCTURE IN SAME STUDY REMARK 900 RELATED ID: 6G6X RELATED DB: PDB REMARK 900 SIMILAR STRUCTURE IN SAME STUDY REMARK 900 RELATED ID: 6G8J RELATED DB: PDB REMARK 900 SIMILAR STRUCTURE IN SAME STUDY REMARK 900 RELATED ID: 6G8K RELATED DB: PDB REMARK 900 SIMILAR STRUCTURE IN SAME STUDY REMARK 900 RELATED ID: 6G8L RELATED DB: PDB REMARK 900 SIMILAR STRUCTURE IN SAME STUDY DBREF 6G8P A 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 6G8P P 124 138 UNP P46937 YAP1_HUMAN 124 133 SEQADV 6G8P GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 6G8P ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 6G8P MET A -2 UNP P31947 EXPRESSION TAG SEQADV 6G8P GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 6G8P SER A 0 UNP P31947 EXPRESSION TAG SEQADV 6G8P ACE P 123 UNP P46937 ACETYLATION SEQRES 1 A 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 236 TRP THR SEQRES 1 P 11 ACE ARG ALA HIS SEP SER EOE ALA SER B3L GLN MODRES 6G8P SEP P 127 SER MODIFIED RESIDUE MODRES 6G8P EOE P 134 PRO MODIFIED RESIDUE HET SEP P 127 13 HET EOE P 134 16 HET CA A 301 1 HET CA A 302 1 HET CL A 303 1 HETNAM SEP PHOSPHOSERINE HETNAM EOE BETA3-PROLINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP C3 H8 N O6 P FORMUL 2 EOE C6 H11 N O2 FORMUL 3 CA 2(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 HOH *349(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 GLU A 31 1 14 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 SER A 105 1 27 HELIX 5 AA5 HIS A 106 ALA A 111 1 6 HELIX 6 AA6 ASP A 113 ALA A 135 1 23 HELIX 7 AA7 ASP A 139 MET A 162 1 24 HELIX 8 AA8 ASN A 166 ILE A 183 1 18 HELIX 9 AA9 SER A 186 ALA A 203 1 18 HELIX 10 AB1 ASP A 204 LEU A 208 5 5 HELIX 11 AB2 SER A 209 THR A 231 1 23 LINK C HIS P 126 N SEP P 127 1555 1555 1.32 LINK C SEP P 127 N SER P 128 1555 1555 1.33 LINK C SER P 128 N AEOE P 134 1555 1555 1.43 LINK C SER P 128 N BEOE P 134 1555 1555 1.43 LINK OE1 GLU A 2 CA CA A 302 1555 1555 2.75 LINK OE1 GLU A 2 CA CA A 302 1555 3655 2.20 LINK OE1 GLU A 35 CA CA A 301 1555 6545 2.30 LINK OE2 GLU A 35 CA CA A 301 1555 6545 2.79 LINK O GLU A 110 CA CA A 301 1555 6545 2.32 LINK OE2 GLU A 188 CA CA A 301 1555 1555 2.39 LINK CA CA A 301 O HOH A 534 1555 1555 2.38 LINK CA CA A 301 O HOH A 536 1555 6544 2.25 LINK CA CA A 301 O HOH A 614 1555 6544 2.33 LINK CA CA A 302 O HOH A 466 1555 1555 2.56 LINK CA CA A 302 O HOH A 466 1555 3655 2.59 LINK CA CA A 302 O HOH A 640 1555 1555 2.94 LINK CA CA A 302 O HOH A 640 1555 3655 2.32 LINK CA CA A 302 O HOH A 654 1555 1555 3.02 LINK CA CA A 302 O HOH A 654 1555 3655 2.37 LINK CA CA A 302 O HOH A 687 1555 1555 2.80 LINK CA CA A 302 O HOH A 687 1555 3655 2.88 CISPEP 1 SER A 105 HIS A 106 0 7.99 SITE 1 AC1 6 GLU A 35 GLU A 110 GLU A 188 HOH A 534 SITE 2 AC1 6 HOH A 536 HOH A 614 SITE 1 AC2 5 GLU A 2 HOH A 466 HOH A 640 HOH A 654 SITE 2 AC2 5 HOH A 687 SITE 1 AC3 3 LYS A 9 HOH A 635 HOH A 693 CRYST1 82.037 111.499 62.460 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012190 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016010 0.00000