HEADER PEPTIDE BINDING PROTEIN 09-APR-18 6G8R TITLE SP140 PHD-BROMODOMAIN COMPLEX WITH SCFV COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-CHAIN VARIABLE FRAGMENT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MISSING DENSITY FOR LINKER REGION; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR BODY PROTEIN SP140; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 687-862; COMPND 10 SYNONYM: LYMPHOID-RESTRICTED HOMOLOG OF SP100,LYSP100,NUCLEAR COMPND 11 AUTOANTIGEN SP-140,SPECKLED 140 KDA; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: ZINC ATOMS NUMBERED 1000 AND 1001 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: SP140, LYSP100; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPIGENETICS PHD BROMODOMAIN SHORT-CHAIN VARIABLE FRAGMENT, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, PEPTIDE BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.FAIRHEAD,S.GRASLUND,C.STRAIN-DAMERELL,S.S.PICAUD,A.C.W.PIKE, AUTHOR 2 D.M.PINKAS,E.WIGREN,C.PREGER,H.PERSSON LOTSHOLM,E.OSSIPOVA, AUTHOR 3 P.FILIPPAKOPOULOS,N.A.BURGESS-BROWN,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 4 C.BOUNTRA,F.VON DELFT,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 17-JAN-24 6G8R 1 REMARK REVDAT 3 13-NOV-19 6G8R 1 COMPND REMARK HELIX SHEET REVDAT 3 2 1 SSBOND LINK SITE SCALE REVDAT 3 3 1 ATOM REVDAT 2 16-JAN-19 6G8R 1 COMPND REMARK HETNAM REVDAT 1 18-APR-18 6G8R 0 JRNL AUTH M.FAIRHEAD,S.GRASLUND,C.STRAIN-DAMERELL,S.S.PICAUD, JRNL AUTH 2 A.C.W.PIKE,D.M.PINKAS,E.WIGREN,C.PREGER,H.PERSSON LOTSHOLM, JRNL AUTH 3 E.OSSIPOVA,P.FILIPPAKOPOULOS,N.A.BURGESS-BROWN, JRNL AUTH 4 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,F.VON DELFT JRNL TITL SP140 PHD-BROMODOMAIN COMPLEX WITH SCFV JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 21107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3980 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -1.78000 REMARK 3 B12 (A**2) : 0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.353 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.812 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3124 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2759 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4212 ; 1.301 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6391 ; 1.128 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 6.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;29.940 ;21.635 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;14.893 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.022 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.043 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3501 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 707 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): -44.0417 43.2150 -5.2119 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.1376 REMARK 3 T33: 0.0062 T12: -0.0467 REMARK 3 T13: 0.0171 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.5401 L22: 2.6171 REMARK 3 L33: 0.9711 L12: -0.3115 REMARK 3 L13: 0.9060 L23: -0.0975 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.1236 S13: 0.0465 REMARK 3 S21: -0.0148 S22: 0.0141 S23: -0.0826 REMARK 3 S31: -0.0637 S32: 0.1353 S33: 0.0340 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 686 B 862 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2408 28.5601 17.6872 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.1322 REMARK 3 T33: 0.0190 T12: -0.0073 REMARK 3 T13: 0.0228 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.5959 L22: 3.0882 REMARK 3 L33: 1.8833 L12: -0.4523 REMARK 3 L13: 0.3171 L23: -0.5506 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0221 S13: -0.1416 REMARK 3 S21: -0.0335 S22: -0.0139 S23: 0.0960 REMARK 3 S31: 0.1231 S32: -0.0767 S33: 0.0207 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6G8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 64.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.53 REMARK 200 R MERGE (I) : 0.22500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.59 REMARK 200 R MERGE FOR SHELL (I) : 3.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2MD8, 5FBO, 5GS3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M SODIUM MALONATE, 0.5 % JEFFAMINE REMARK 280 ED-2003, 0.1 M HEPES PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.45000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 228.90000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.67500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 286.12500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.22500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 114.45000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 228.90000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 286.12500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 171.67500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 57.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 ALA A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 245 REMARK 465 LEU A 246 REMARK 465 TYR A 247 REMARK 465 PHE A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 GLY B 740 REMARK 465 SER B 741 REMARK 465 GLN B 742 REMARK 465 GLN B 743 REMARK 465 CYS B 744 REMARK 465 GLU B 790 REMARK 465 ALA B 791 REMARK 465 CYS B 792 REMARK 465 GLN B 793 REMARK 465 GLY B 794 REMARK 465 LYS B 835 REMARK 465 TYR B 836 REMARK 465 LYS B 837 REMARK 465 SER B 863 REMARK 465 SER B 864 REMARK 465 LYS B 865 REMARK 465 GLY B 866 REMARK 465 GLY B 867 REMARK 465 TYR B 868 REMARK 465 GLY B 869 REMARK 465 LEU B 870 REMARK 465 ASN B 871 REMARK 465 ASP B 872 REMARK 465 ILE B 873 REMARK 465 PHE B 874 REMARK 465 GLU B 875 REMARK 465 ALA B 876 REMARK 465 GLN B 877 REMARK 465 LYS B 878 REMARK 465 ILE B 879 REMARK 465 GLU B 880 REMARK 465 TRP B 881 REMARK 465 HIS B 882 REMARK 465 GLU B 883 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 SER A 141 OG REMARK 470 MET B 687 CG SD CE REMARK 470 GLU B 724 CG CD OE1 OE2 REMARK 470 GLN B 746 CG CD OE1 NE2 REMARK 470 GLU B 752 CG CD OE1 OE2 REMARK 470 TYR B 784 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 788 CG1 CG2 CD1 REMARK 470 ARG B 789 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 796 CG CD CE NZ REMARK 470 TYR B 834 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 838 CG OD1 OD2 REMARK 470 LYS B 852 CG CD CE NZ REMARK 470 GLN B 861 CG CD OE1 NE2 REMARK 470 GLU B 862 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 48 -61.95 -108.57 REMARK 500 TYR A 52 -119.26 -111.16 REMARK 500 ARG A 67 -45.02 -137.19 REMARK 500 TYR A 103 30.60 -145.66 REMARK 500 SER A 164 -120.04 48.36 REMARK 500 ALA A 185 -36.91 72.49 REMARK 500 LEU A 228 -153.48 60.83 REMARK 500 THR B 707 -61.73 -97.56 REMARK 500 GLU B 797 123.86 -179.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1009 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 900 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 693 SG REMARK 620 2 CYS B 696 SG 109.5 REMARK 620 3 HIS B 713 ND1 101.9 100.8 REMARK 620 4 CYS B 716 SG 104.9 119.3 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 705 SG REMARK 620 2 CYS B 708 SG 101.8 REMARK 620 3 CYS B 730 SG 112.4 117.1 REMARK 620 4 CYS B 733 SG 109.5 100.6 114.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 901 DBREF 6G8R A 1 250 PDB 6G8R 6G8R 1 250 DBREF 6G8R B 687 862 UNP Q13342 SP140_HUMAN 687 862 SEQADV 6G8R SER B 686 UNP Q13342 EXPRESSION TAG SEQADV 6G8R SER B 863 UNP Q13342 EXPRESSION TAG SEQADV 6G8R SER B 864 UNP Q13342 EXPRESSION TAG SEQADV 6G8R LYS B 865 UNP Q13342 EXPRESSION TAG SEQADV 6G8R GLY B 866 UNP Q13342 EXPRESSION TAG SEQADV 6G8R GLY B 867 UNP Q13342 EXPRESSION TAG SEQADV 6G8R TYR B 868 UNP Q13342 EXPRESSION TAG SEQADV 6G8R GLY B 869 UNP Q13342 EXPRESSION TAG SEQADV 6G8R LEU B 870 UNP Q13342 EXPRESSION TAG SEQADV 6G8R ASN B 871 UNP Q13342 EXPRESSION TAG SEQADV 6G8R ASP B 872 UNP Q13342 EXPRESSION TAG SEQADV 6G8R ILE B 873 UNP Q13342 EXPRESSION TAG SEQADV 6G8R PHE B 874 UNP Q13342 EXPRESSION TAG SEQADV 6G8R GLU B 875 UNP Q13342 EXPRESSION TAG SEQADV 6G8R ALA B 876 UNP Q13342 EXPRESSION TAG SEQADV 6G8R GLN B 877 UNP Q13342 EXPRESSION TAG SEQADV 6G8R LYS B 878 UNP Q13342 EXPRESSION TAG SEQADV 6G8R ILE B 879 UNP Q13342 EXPRESSION TAG SEQADV 6G8R GLU B 880 UNP Q13342 EXPRESSION TAG SEQADV 6G8R TRP B 881 UNP Q13342 EXPRESSION TAG SEQADV 6G8R HIS B 882 UNP Q13342 EXPRESSION TAG SEQADV 6G8R GLU B 883 UNP Q13342 EXPRESSION TAG SEQRES 1 A 250 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 250 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 250 PHE THR PHE TYR GLY SER GLY MET GLY TRP VAL ARG GLN SEQRES 4 A 250 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE TYR SEQRES 5 A 250 SER GLY SER GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 250 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 A 250 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 250 ALA VAL TYR TYR CYS ALA ARG THR SER ILE TYR TYR TYR SEQRES 9 A 250 TYR MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 A 250 SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 11 A 250 GLY GLY GLY SER ASP ILE GLN MET THR GLN SER PRO SER SEQRES 12 A 250 SER LEU SER ALA SER VAL GLY ASP ARG VAL THR ILE THR SEQRES 13 A 250 CYS ARG ALA SER GLN SER ILE SER SER TYR LEU ASN TRP SEQRES 14 A 250 TYR GLN GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE SEQRES 15 A 250 TYR ALA ALA SER SER LEU GLN SER GLY VAL PRO SER ARG SEQRES 16 A 250 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU THR SEQRES 17 A 250 ILE SER SER LEU GLN PRO GLU ASP PHE ALA THR TYR TYR SEQRES 18 A 250 CYS GLN GLN SER SER SER LEU PHE THR PHE GLY GLN GLY SEQRES 19 A 250 THR LYS LEU GLU ILE LYS ARG THR ALA GLU ASN LEU TYR SEQRES 20 A 250 PHE GLN SER SEQRES 1 B 198 SER MET ARG ASN LEU ASP GLU CYS GLU VAL CYS ARG ASP SEQRES 2 B 198 GLY GLY GLU LEU PHE CYS CYS ASP THR CYS SER ARG VAL SEQRES 3 B 198 PHE HIS GLU ASP CYS HIS ILE PRO PRO VAL GLU ALA GLU SEQRES 4 B 198 ARG THR PRO TRP ASN CYS ILE PHE CYS ARG MET LYS GLU SEQRES 5 B 198 SER PRO GLY SER GLN GLN CYS CYS GLN GLU SER GLU VAL SEQRES 6 B 198 LEU GLU ARG GLN MET CYS PRO GLU GLU GLN LEU LYS CYS SEQRES 7 B 198 GLU PHE LEU LEU LEU LYS VAL TYR CYS CYS SER GLU SER SEQRES 8 B 198 SER PHE PHE ALA LYS ILE PRO TYR TYR TYR TYR ILE ARG SEQRES 9 B 198 GLU ALA CYS GLN GLY LEU LYS GLU PRO MET TRP LEU ASP SEQRES 10 B 198 LYS ILE LYS LYS ARG LEU ASN GLU HIS GLY TYR PRO GLN SEQRES 11 B 198 VAL GLU GLY PHE VAL GLN ASP MET ARG LEU ILE PHE GLN SEQRES 12 B 198 ASN HIS ARG ALA SER TYR LYS TYR LYS ASP PHE GLY GLN SEQRES 13 B 198 MET GLY PHE ARG LEU GLU ALA GLU PHE GLU LYS ASN PHE SEQRES 14 B 198 LYS GLU VAL PHE ALA ILE GLN GLU SER SER LYS GLY GLY SEQRES 15 B 198 TYR GLY LEU ASN ASP ILE PHE GLU ALA GLN LYS ILE GLU SEQRES 16 B 198 TRP HIS GLU HET EDO A 301 4 HET EDO A 302 4 HET ZN B 900 1 HET ZN B 901 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *13(H2 O) HELIX 1 AA1 THR A 28 SER A 32 5 5 HELIX 2 AA2 ASP A 62 LYS A 65 5 4 HELIX 3 AA3 GLN A 213 PHE A 217 5 5 HELIX 4 AA4 CYS B 730 LYS B 736 1 7 HELIX 5 AA5 GLN B 746 ARG B 753 1 8 HELIX 6 AA6 CYS B 756 CYS B 773 1 18 HELIX 7 AA7 GLU B 775 LYS B 781 1 7 HELIX 8 AA8 PRO B 783 ILE B 788 5 6 HELIX 9 AA9 TRP B 800 GLU B 810 1 11 HELIX 10 AB1 GLN B 815 ALA B 832 1 18 HELIX 11 AB2 GLY B 843 PHE B 858 1 16 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N LEU A 5 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 113 VAL A 117 1 O THR A 116 N VAL A 12 SHEET 3 AA2 6 ALA A 92 SER A 100 -1 N TYR A 94 O THR A 113 SHEET 4 AA2 6 GLY A 33 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O SER A 49 N TRP A 36 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O TYR A 59 N SER A 50 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 113 VAL A 117 1 O THR A 116 N VAL A 12 SHEET 3 AA3 4 ALA A 92 SER A 100 -1 N TYR A 94 O THR A 113 SHEET 4 AA3 4 TYR A 105 TRP A 109 -1 O TYR A 105 N SER A 100 SHEET 1 AA4 4 MET A 138 SER A 141 0 SHEET 2 AA4 4 VAL A 153 ALA A 159 -1 O ARG A 158 N THR A 139 SHEET 3 AA4 4 ASP A 204 ILE A 209 -1 O PHE A 205 N CYS A 157 SHEET 4 AA4 4 PHE A 196 SER A 201 -1 N SER A 197 O THR A 208 SHEET 1 AA5 6 SER A 144 ALA A 147 0 SHEET 2 AA5 6 THR A 235 ILE A 239 1 O GLU A 238 N LEU A 145 SHEET 3 AA5 6 ALA A 218 GLN A 224 -1 N ALA A 218 O LEU A 237 SHEET 4 AA5 6 LEU A 167 GLN A 172 -1 N TYR A 170 O TYR A 221 SHEET 5 AA5 6 LYS A 179 TYR A 183 -1 O LYS A 179 N GLN A 171 SHEET 6 AA5 6 SER A 187 LEU A 188 -1 O SER A 187 N TYR A 183 SHEET 1 AA6 4 SER A 144 ALA A 147 0 SHEET 2 AA6 4 THR A 235 ILE A 239 1 O GLU A 238 N LEU A 145 SHEET 3 AA6 4 ALA A 218 GLN A 224 -1 N ALA A 218 O LEU A 237 SHEET 4 AA6 4 THR A 230 PHE A 231 -1 O THR A 230 N GLN A 224 SHEET 1 AA7 2 PHE B 703 CYS B 704 0 SHEET 2 AA7 2 VAL B 711 PHE B 712 -1 O PHE B 712 N PHE B 703 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 2 CYS A 157 CYS A 222 1555 1555 2.02 LINK SG CYS B 693 ZN ZN B 900 1555 1555 2.33 LINK SG CYS B 696 ZN ZN B 900 1555 1555 2.35 LINK SG CYS B 705 ZN ZN B 901 1555 1555 2.33 LINK SG CYS B 708 ZN ZN B 901 1555 1555 2.35 LINK ND1 HIS B 713 ZN ZN B 900 1555 1555 2.12 LINK SG CYS B 716 ZN ZN B 900 1555 1555 2.32 LINK SG CYS B 730 ZN ZN B 901 1555 1555 2.34 LINK SG CYS B 733 ZN ZN B 901 1555 1555 2.33 CISPEP 1 SER A 141 PRO A 142 0 -7.36 CISPEP 2 ILE B 718 PRO B 719 0 -2.06 CISPEP 3 THR B 726 PRO B 727 0 -5.17 SITE 1 AC1 4 GLN A 171 LYS A 179 PHE A 196 ASP A 216 SITE 1 AC2 4 GLN A 172 PRO A 174 GLY A 175 LYS A 176 SITE 1 AC3 4 CYS B 693 CYS B 696 HIS B 713 CYS B 716 SITE 1 AC4 4 CYS B 705 CYS B 708 CYS B 730 CYS B 733 CRYST1 89.200 89.200 343.350 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011211 0.006473 0.000000 0.00000 SCALE2 0.000000 0.012945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002912 0.00000