data_6G8S # _entry.id 6G8S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6G8S pdb_00006g8s 10.2210/pdb6g8s/pdb WWPDB D_1200009538 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-24 2 'Structure model' 1 1 2019-08-28 3 'Structure model' 1 2 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_database_2.pdbx_DOI' 13 3 'Structure model' '_database_2.pdbx_database_accession' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 28 3 'Structure model' '_pdbx_struct_conn_angle.value' 29 3 'Structure model' '_struct_conn.pdbx_dist_value' 30 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6G8S _pdbx_database_status.recvd_initial_deposition_date 2018-04-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McQuaid, K.T.' 1 ? 'Hall, J.P.' 2 ? 'Cardin, C.J.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistry _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0947-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first 15859 _citation.page_last 15867 _citation.title 'X-ray Crystal Structures Show DNA Stacking Advantage of Terminal Nitrile Substitution in Ru-dppz Complexes.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/chem.201803021 _citation.pdbx_database_id_PubMed 30063271 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McQuaid, K.' 1 ? primary 'Hall, J.P.' 2 ? primary 'Brazier, J.A.' 3 ? primary 'Cardin, D.J.' 4 ? primary 'Cardin, C.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*GP*GP*GP*TP*CP*CP*GP*G)-3') ; 3061.991 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*CP*GP*GP*AP*CP*CP*CP*GP*G)-3') ; 3030.981 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 2 ? ? ? ? 4 non-polymer syn 'Ruthenium (bis-(tetraazaphenanthrene)) (11,12-dicyano-dipyridophenazine)' 797.751 2 ? ? ? ? 5 water nat water 18.015 68 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DG)(DG)(DT)(DC)(DC)(DG)(DG)' CCGGGTCCGG A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DG)(DA)(DC)(DC)(DC)(DG)(DG)' CCGGACCCGG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'BARIUM ION' BA 4 'Ruthenium (bis-(tetraazaphenanthrene)) (11,12-dicyano-dipyridophenazine)' EQQ 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DG n 2 1 DC n 2 2 DC n 2 3 DG n 2 4 DG n 2 5 DA n 2 6 DC n 2 7 DC n 2 8 DC n 2 9 DG n 2 10 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 10 'synthetic construct' ? 32630 ? 2 1 sample 1 10 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EQQ non-polymer . 'Ruthenium (bis-(tetraazaphenanthrene)) (11,12-dicyano-dipyridophenazine)' ? 'C40 H20 N14 Ru' 797.751 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DC 7 7 7 DC DC B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 DG 9 9 9 DG DG B . n B 2 10 DG 10 10 10 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BA 1 101 101 BA BA A . D 4 EQQ 1 102 1 EQQ RC2 A . E 3 BA 1 101 102 BA BA B . F 4 EQQ 1 102 2 EQQ RC2 B . G 5 HOH 1 201 49 HOH HOH A . G 5 HOH 2 202 114 HOH HOH A . G 5 HOH 3 203 23 HOH HOH A . G 5 HOH 4 204 8 HOH HOH A . G 5 HOH 5 205 25 HOH HOH A . G 5 HOH 6 206 9 HOH HOH A . G 5 HOH 7 207 18 HOH HOH A . G 5 HOH 8 208 10 HOH HOH A . G 5 HOH 9 209 4 HOH HOH A . G 5 HOH 10 210 110 HOH HOH A . G 5 HOH 11 211 21 HOH HOH A . G 5 HOH 12 212 112 HOH HOH A . G 5 HOH 13 213 89 HOH HOH A . G 5 HOH 14 214 33 HOH HOH A . G 5 HOH 15 215 1 HOH HOH A . G 5 HOH 16 216 92 HOH HOH A . G 5 HOH 17 217 107 HOH HOH A . G 5 HOH 18 218 76 HOH HOH A . G 5 HOH 19 219 29 HOH HOH A . G 5 HOH 20 220 93 HOH HOH A . G 5 HOH 21 221 96 HOH HOH A . G 5 HOH 22 222 94 HOH HOH A . G 5 HOH 23 223 30 HOH HOH A . G 5 HOH 24 224 79 HOH HOH A . G 5 HOH 25 225 19 HOH HOH A . G 5 HOH 26 226 85 HOH HOH A . G 5 HOH 27 227 74 HOH HOH A . G 5 HOH 28 228 55 HOH HOH A . G 5 HOH 29 229 70 HOH HOH A . G 5 HOH 30 230 97 HOH HOH A . G 5 HOH 31 231 87 HOH HOH A . G 5 HOH 32 232 90 HOH HOH A . G 5 HOH 33 233 105 HOH HOH A . G 5 HOH 34 234 101 HOH HOH A . G 5 HOH 35 235 40 HOH HOH A . G 5 HOH 36 236 41 HOH HOH A . G 5 HOH 37 237 12 HOH HOH A . H 5 HOH 1 201 128 HOH HOH B . H 5 HOH 2 202 59 HOH HOH B . H 5 HOH 3 203 69 HOH HOH B . H 5 HOH 4 204 22 HOH HOH B . H 5 HOH 5 205 11 HOH HOH B . H 5 HOH 6 206 14 HOH HOH B . H 5 HOH 7 207 24 HOH HOH B . H 5 HOH 8 208 7 HOH HOH B . H 5 HOH 9 209 6 HOH HOH B . H 5 HOH 10 210 3 HOH HOH B . H 5 HOH 11 211 20 HOH HOH B . H 5 HOH 12 212 31 HOH HOH B . H 5 HOH 13 213 54 HOH HOH B . H 5 HOH 14 214 2 HOH HOH B . H 5 HOH 15 215 130 HOH HOH B . H 5 HOH 16 216 61 HOH HOH B . H 5 HOH 17 217 63 HOH HOH B . H 5 HOH 18 218 26 HOH HOH B . H 5 HOH 19 219 109 HOH HOH B . H 5 HOH 20 220 82 HOH HOH B . H 5 HOH 21 221 28 HOH HOH B . H 5 HOH 22 222 34 HOH HOH B . H 5 HOH 23 223 52 HOH HOH B . H 5 HOH 24 224 106 HOH HOH B . H 5 HOH 25 225 44 HOH HOH B . H 5 HOH 26 226 126 HOH HOH B . H 5 HOH 27 227 73 HOH HOH B . H 5 HOH 28 228 65 HOH HOH B . H 5 HOH 29 229 48 HOH HOH B . H 5 HOH 30 230 38 HOH HOH B . H 5 HOH 31 231 16 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.13_2998: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXCD ? ? ? . 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6G8S _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.247 _cell.length_a_esd ? _cell.length_b 47.247 _cell.length_b_esd ? _cell.length_c 33.981 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6G8S _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.11 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Crystallisation was observed in a number of conditions from the Nucleic Acid Mini-Screen from Hampton Research, where the best diffracting example came from a 8uL drop containing; 125 uM d(CCGGACCCGG/CCGGGTCCGG)2, 750 uM rac-[Ru(TAP)2(11,12-CN2-dppz)]2+, 7.5% v/v MPD, 30 mM pH 7 sodium cacodylate, 9 mM spermine tetrahydrochloride, 60 mM KCl and 15 mM BaCl2; all equilibrated against 1 mL of 35% v/v MPD. Orange/red rods grew following roughly 3 weeks of incubation at 291 K. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-07-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Dual Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97950 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6G8S _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.66 _reflns.d_resolution_low 27.59 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9018 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.9 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.053 _reflns.pdbx_Rpim_I_all 0.015 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.66 _reflns_shell.d_res_low 1.69 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 460 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.905 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 13 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.942 _reflns_shell.pdbx_Rpim_I_all 0.261 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.652 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6G8S _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.660 _refine.ls_d_res_low 23.623 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9018 _refine.ls_number_reflns_R_free 941 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.96 _refine.ls_percent_reflns_R_free 5.42 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1883 _refine.ls_R_factor_R_free 0.2034 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1873 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.51 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.09 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.22 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 112 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 584 _refine_hist.d_res_high 1.660 _refine_hist.d_res_low 23.623 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 638 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.939 ? 1002 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 27.173 ? 222 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.045 ? 92 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 28 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6601 1.7476 . . 130 2356 100.00 . . . 0.3934 . 0.3962 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7476 1.8570 . . 118 2352 100.00 . . . 0.4328 . 0.3389 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8570 2.0003 . . 138 2366 100.00 . . . 0.2722 . 0.2909 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0003 2.2015 . . 128 2323 100.00 . . . 0.1866 . 0.2307 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2015 2.5198 . . 127 2374 100.00 . . . 0.2634 . 0.1989 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5198 3.1734 . . 135 2337 100.00 . . . 0.2438 . 0.1998 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1734 23.6258 . . 165 2312 100.00 . . . 0.1639 . 0.1483 . . . . . . . . . . # _struct.entry_id 6G8S _struct.title '[Ru(TAP)2(11,12-CN2-dppz)]2+ bound to d(CCGGACCCGG/CCGGGTCCGG)2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6G8S _struct_keywords.text 'Ruthenium, intercalation, DNA, asymmetric' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6G8S 6G8S ? 1 ? 1 2 PDB 6G8S 6G8S ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6G8S A 1 ? 10 ? 6G8S 1 ? 10 ? 1 10 2 2 6G8S B 1 ? 10 ? 6G8S 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2120 ? 1 MORE -32 ? 1 'SSA (A^2)' 4480 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA . BA ? ? A DG 4 A BA 101 1_555 ? ? ? ? ? ? ? 2.753 ? ? metalc2 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? A BA 101 A HOH 204 1_555 ? ? ? ? ? ? ? 2.672 ? ? metalc3 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? A BA 101 A HOH 208 1_555 ? ? ? ? ? ? ? 2.777 ? ? metalc4 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? A BA 101 A HOH 211 1_555 ? ? ? ? ? ? ? 2.725 ? ? metalc5 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? A BA 101 A HOH 217 1_555 ? ? ? ? ? ? ? 2.957 ? ? metalc6 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? A BA 101 A HOH 237 1_555 ? ? ? ? ? ? ? 2.704 ? ? metalc7 metalc ? ? C BA . BA ? ? ? 1_555 H HOH . O ? ? A BA 101 B HOH 212 1_555 ? ? ? ? ? ? ? 2.963 ? ? metalc8 metalc ? ? G HOH . O ? ? ? 1_555 E BA . BA ? ? A HOH 214 B BA 101 1_555 ? ? ? ? ? ? ? 2.983 ? ? metalc9 metalc ? ? B DG 4 O6 ? ? ? 1_555 E BA . BA ? ? B DG 4 B BA 101 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc10 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 205 1_555 ? ? ? ? ? ? ? 2.747 ? ? metalc11 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 208 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc12 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 211 1_555 ? ? ? ? ? ? ? 2.790 ? ? metalc13 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 220 1_555 ? ? ? ? ? ? ? 2.913 ? ? metalc14 metalc ? ? E BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 B HOH 231 1_555 ? ? ? ? ? ? ? 2.718 ? ? hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 6 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 6 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 A ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 B ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 A ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 N2 B ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 9 O6 A ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 9 O6 B ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 A ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog29 hydrog ? ? A DG 10 O6 B ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 204 ? 1_555 67.6 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 128.7 ? 3 O ? G HOH . ? A HOH 204 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 208 ? 1_555 136.4 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 138.2 ? 5 O ? G HOH . ? A HOH 204 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 76.9 ? 6 O ? G HOH . ? A HOH 208 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 67.0 ? 7 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 217 ? 1_555 80.1 ? 8 O ? G HOH . ? A HOH 204 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 217 ? 1_555 134.0 ? 9 O ? G HOH . ? A HOH 208 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 217 ? 1_555 89.3 ? 10 O ? G HOH . ? A HOH 211 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 217 ? 1_555 141.6 ? 11 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 237 ? 1_555 136.4 ? 12 O ? G HOH . ? A HOH 204 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 237 ? 1_555 97.7 ? 13 O ? G HOH . ? A HOH 208 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 237 ? 1_555 90.9 ? 14 O ? G HOH . ? A HOH 211 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 237 ? 1_555 68.1 ? 15 O ? G HOH . ? A HOH 217 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? G HOH . ? A HOH 237 ? 1_555 83.4 ? 16 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? H HOH . ? B HOH 212 ? 1_555 76.4 ? 17 O ? G HOH . ? A HOH 204 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? H HOH . ? B HOH 212 ? 1_555 71.3 ? 18 O ? G HOH . ? A HOH 208 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? H HOH . ? B HOH 212 ? 1_555 145.2 ? 19 O ? G HOH . ? A HOH 211 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? H HOH . ? B HOH 212 ? 1_555 112.8 ? 20 O ? G HOH . ? A HOH 217 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? H HOH . ? B HOH 212 ? 1_555 69.9 ? 21 O ? G HOH . ? A HOH 237 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? H HOH . ? B HOH 212 ? 1_555 60.0 ? 22 O ? G HOH . ? A HOH 214 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 75.5 ? 23 O ? G HOH . ? A HOH 214 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 205 ? 1_555 144.9 ? 24 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 205 ? 1_555 130.9 ? 25 O ? G HOH . ? A HOH 214 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 208 ? 1_555 69.9 ? 26 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 208 ? 1_555 70.0 ? 27 O ? H HOH . ? B HOH 205 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 208 ? 1_555 135.3 ? 28 O ? G HOH . ? A HOH 214 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 211 ? 1_555 114.4 ? 29 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 211 ? 1_555 139.3 ? 30 O ? H HOH . ? B HOH 205 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 211 ? 1_555 63.6 ? 31 O ? H HOH . ? B HOH 208 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 211 ? 1_555 76.8 ? 32 O ? G HOH . ? A HOH 214 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 220 ? 1_555 70.8 ? 33 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 220 ? 1_555 80.1 ? 34 O ? H HOH . ? B HOH 205 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 220 ? 1_555 89.6 ? 35 O ? H HOH . ? B HOH 208 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 220 ? 1_555 135.1 ? 36 O ? H HOH . ? B HOH 211 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 220 ? 1_555 140.5 ? 37 O ? G HOH . ? A HOH 214 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 1_555 65.7 ? 38 O6 ? B DG 4 ? B DG 4 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 1_555 138.1 ? 39 O ? H HOH . ? B HOH 205 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 1_555 81.0 ? 40 O ? H HOH . ? B HOH 208 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 1_555 108.6 ? 41 O ? H HOH . ? B HOH 211 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 1_555 74.6 ? 42 O ? H HOH . ? B HOH 220 ? 1_555 BA ? E BA . ? B BA 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 1_555 72.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BA 101 ? 8 'binding site for residue BA A 101' AC2 Software A EQQ 102 ? 13 'binding site for residue EQQ A 102' AC3 Software B BA 101 ? 8 'binding site for residue BA B 101' AC4 Software B EQQ 102 ? 13 'binding site for residue EQQ B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 8 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 8 HOH G . ? HOH A 204 . ? 1_555 ? 4 AC1 8 HOH G . ? HOH A 208 . ? 1_555 ? 5 AC1 8 HOH G . ? HOH A 211 . ? 1_555 ? 6 AC1 8 HOH G . ? HOH A 217 . ? 1_555 ? 7 AC1 8 HOH G . ? HOH A 237 . ? 1_555 ? 8 AC1 8 HOH H . ? HOH B 212 . ? 1_555 ? 9 AC2 13 DC A 7 ? DC A 7 . ? 4_565 ? 10 AC2 13 DC A 8 ? DC A 8 . ? 4_565 ? 11 AC2 13 DG A 9 ? DG A 9 . ? 1_555 ? 12 AC2 13 DG A 10 ? DG A 10 . ? 1_555 ? 13 AC2 13 HOH G . ? HOH A 205 . ? 1_555 ? 14 AC2 13 HOH G . ? HOH A 212 . ? 3_654 ? 15 AC2 13 HOH G . ? HOH A 221 . ? 1_555 ? 16 AC2 13 DC B 1 ? DC B 1 . ? 1_555 ? 17 AC2 13 DC B 2 ? DC B 2 . ? 1_555 ? 18 AC2 13 DG B 3 ? DG B 3 . ? 1_555 ? 19 AC2 13 DG B 3 ? DG B 3 . ? 4_565 ? 20 AC2 13 DG B 4 ? DG B 4 . ? 4_565 ? 21 AC2 13 HOH H . ? HOH B 219 . ? 4_565 ? 22 AC3 8 HOH G . ? HOH A 214 . ? 1_555 ? 23 AC3 8 DG B 3 ? DG B 3 . ? 1_555 ? 24 AC3 8 DG B 4 ? DG B 4 . ? 1_555 ? 25 AC3 8 HOH H . ? HOH B 205 . ? 1_555 ? 26 AC3 8 HOH H . ? HOH B 208 . ? 1_555 ? 27 AC3 8 HOH H . ? HOH B 211 . ? 1_555 ? 28 AC3 8 HOH H . ? HOH B 220 . ? 1_555 ? 29 AC3 8 HOH H . ? HOH B 231 . ? 1_555 ? 30 AC4 13 DC A 1 ? DC A 1 . ? 1_555 ? 31 AC4 13 DC A 2 ? DC A 2 . ? 1_555 ? 32 AC4 13 DG A 3 ? DG A 3 . ? 1_555 ? 33 AC4 13 DG A 3 ? DG A 3 . ? 3_554 ? 34 AC4 13 DG A 4 ? DG A 4 . ? 3_554 ? 35 AC4 13 HOH G . ? HOH A 232 . ? 3_554 ? 36 AC4 13 DC B 7 ? DC B 7 . ? 3_554 ? 37 AC4 13 DC B 8 ? DC B 8 . ? 3_554 ? 38 AC4 13 DG B 9 ? DG B 9 . ? 1_555 ? 39 AC4 13 DG B 10 ? DG B 10 . ? 1_555 ? 40 AC4 13 HOH H . ? HOH B 207 . ? 1_555 ? 41 AC4 13 HOH H . ? HOH B 216 . ? 4_555 ? 42 AC4 13 HOH H . ? HOH B 217 . ? 1_555 ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x,z+3/4 3 y,-x,z+1/4 4 -x,-y,z+1/2 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 14.2545 13.1973 5.5714 0.4526 0.4765 0.3965 0.0729 -0.0351 -0.0539 0.9237 0.5315 0.0768 0.7091 0.1605 0.1115 0.5678 -0.2128 -0.1278 0.3363 -0.3987 -0.0998 0.4403 -0.2690 0.0163 'X-RAY DIFFRACTION' 2 ? refined 11.7791 10.8490 -3.4934 0.4214 0.4491 0.3718 0.0946 -0.0612 -0.0561 0.2726 0.7806 0.1399 0.4732 -0.1935 -0.3204 -0.2332 0.2170 -0.1515 0.0845 0.3835 -0.0782 -0.1579 0.3784 0.0002 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 10 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 10 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 EQQ N01 N N N 145 EQQ C02 C N N 146 EQQ C03 C Y N 147 EQQ C04 C Y N 148 EQQ C05 C Y N 149 EQQ C06 C Y N 150 EQQ C07 C Y N 151 EQQ C08 C Y N 152 EQQ C10 C Y N 153 EQQ C11 C Y N 154 EQQ C13 C Y N 155 EQQ C14 C Y N 156 EQQ C15 C Y N 157 EQQ C16 C Y N 158 EQQ C18 C Y N 159 EQQ C19 C Y N 160 EQQ C20 C Y N 161 EQQ C23 C Y N 162 EQQ C24 C Y N 163 EQQ C25 C Y N 164 EQQ C27 C Y N 165 EQQ C28 C Y N 166 EQQ C30 C Y N 167 EQQ C31 C Y N 168 EQQ C32 C Y N 169 EQQ C33 C Y N 170 EQQ C34 C Y N 171 EQQ C36 C Y N 172 EQQ C37 C Y N 173 EQQ C38 C Y N 174 EQQ C41 C Y N 175 EQQ C42 C Y N 176 EQQ C44 C Y N 177 EQQ C45 C Y N 178 EQQ C46 C Y N 179 EQQ C47 C Y N 180 EQQ C48 C Y N 181 EQQ C49 C Y N 182 EQQ C52 C Y N 183 EQQ C53 C Y N 184 EQQ C54 C N N 185 EQQ N09 N Y N 186 EQQ N12 N Y N 187 EQQ N17 N Y N 188 EQQ N22 N Y N 189 EQQ N26 N Y N 190 EQQ N29 N Y N 191 EQQ N35 N Y N 192 EQQ N39 N Y N 193 EQQ N40 N Y N 194 EQQ N43 N Y N 195 EQQ N50 N Y N 196 EQQ N51 N Y N 197 EQQ N55 N N N 198 EQQ RU RU N N 199 EQQ H1 H N N 200 EQQ H2 H N N 201 EQQ H3 H N N 202 EQQ H4 H N N 203 EQQ H5 H N N 204 EQQ H6 H N N 205 EQQ H7 H N N 206 EQQ H8 H N N 207 EQQ H9 H N N 208 EQQ H10 H N N 209 EQQ H11 H N N 210 EQQ H12 H N N 211 EQQ H13 H N N 212 EQQ H14 H N N 213 EQQ H15 H N N 214 EQQ H16 H N N 215 EQQ H17 H N N 216 EQQ H18 H N N 217 EQQ H19 H N N 218 EQQ H20 H N N 219 HOH O O N N 220 HOH H1 H N N 221 HOH H2 H N N 222 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 EQQ C33 C32 doub Y N 150 EQQ C33 C34 sing Y N 151 EQQ C32 C31 sing Y N 152 EQQ N35 C34 doub Y N 153 EQQ N35 C36 sing Y N 154 EQQ C34 C38 sing Y N 155 EQQ C36 C37 doub Y N 156 EQQ C31 N29 doub Y N 157 EQQ C31 C30 sing Y N 158 EQQ N29 C28 sing Y N 159 EQQ C38 C30 sing Y N 160 EQQ C38 N39 doub Y N 161 EQQ C30 N26 doub Y N 162 EQQ C37 N39 sing Y N 163 EQQ N39 RU sing N N 164 EQQ C28 C27 doub Y N 165 EQQ C53 C52 doub Y N 166 EQQ C53 N50 sing Y N 167 EQQ C52 N51 sing Y N 168 EQQ N26 C27 sing Y N 169 EQQ N26 RU sing N N 170 EQQ N50 RU sing N N 171 EQQ N50 C49 doub Y N 172 EQQ N51 C48 doub Y N 173 EQQ RU N22 sing N N 174 EQQ RU N17 sing N N 175 EQQ RU N40 sing N N 176 EQQ C23 N22 doub Y N 177 EQQ C23 C24 sing Y N 178 EQQ N22 C19 sing Y N 179 EQQ C49 C48 sing Y N 180 EQQ C49 C45 sing Y N 181 EQQ C48 C47 sing Y N 182 EQQ C24 C25 doub Y N 183 EQQ N17 C16 doub Y N 184 EQQ N17 C18 sing Y N 185 EQQ C16 C15 sing Y N 186 EQQ C19 C18 doub Y N 187 EQQ C19 C20 sing Y N 188 EQQ C18 C13 sing Y N 189 EQQ N40 C45 doub Y N 190 EQQ N40 C41 sing Y N 191 EQQ C25 C20 sing Y N 192 EQQ C45 C44 sing Y N 193 EQQ C47 C46 doub Y N 194 EQQ C20 C11 doub Y N 195 EQQ C15 C14 doub Y N 196 EQQ C13 C14 sing Y N 197 EQQ C13 C10 doub Y N 198 EQQ C41 C42 doub Y N 199 EQQ C11 C10 sing Y N 200 EQQ C11 N12 sing Y N 201 EQQ C44 C46 sing Y N 202 EQQ C44 N43 doub Y N 203 EQQ C10 N09 sing Y N 204 EQQ N12 C08 doub Y N 205 EQQ C42 N43 sing Y N 206 EQQ N09 C07 doub Y N 207 EQQ C08 C07 sing Y N 208 EQQ C08 C05 sing Y N 209 EQQ C07 C06 sing Y N 210 EQQ C05 C04 doub Y N 211 EQQ C06 C03 doub Y N 212 EQQ C04 C03 sing Y N 213 EQQ C04 C54 sing N N 214 EQQ C03 C02 sing N N 215 EQQ C54 N55 trip N N 216 EQQ C02 N01 trip N N 217 EQQ C05 H1 sing N N 218 EQQ C06 H2 sing N N 219 EQQ C14 H3 sing N N 220 EQQ C15 H4 sing N N 221 EQQ C16 H5 sing N N 222 EQQ C23 H6 sing N N 223 EQQ C24 H7 sing N N 224 EQQ C25 H8 sing N N 225 EQQ C27 H9 sing N N 226 EQQ C28 H10 sing N N 227 EQQ C32 H11 sing N N 228 EQQ C33 H12 sing N N 229 EQQ C36 H13 sing N N 230 EQQ C37 H14 sing N N 231 EQQ C41 H15 sing N N 232 EQQ C42 H16 sing N N 233 EQQ C46 H17 sing N N 234 EQQ C47 H18 sing N N 235 EQQ C52 H19 sing N N 236 EQQ C53 H20 sing N N 237 HOH O H1 sing N N 238 HOH O H2 sing N N 239 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6G8S 'double helix' 6G8S 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.013 2.289 -0.410 7.270 4.348 -85.100 1 A_DC1:DG10_B A 1 ? B 10 ? ? ? 1 A DC 2 1_555 B DG 9 1_555 0.222 -0.177 -0.163 -4.885 5.915 -0.692 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.188 -0.036 0.381 27.227 -6.749 0.730 3 A_DG3:DC8_B A 3 ? B 8 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.256 -0.164 -0.142 -13.132 0.871 0.118 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DG 5 1_555 B DC 6 1_555 -0.326 -0.297 0.272 -3.865 -4.579 2.560 5 A_DG5:DC6_B A 5 ? B 6 ? 19 1 1 A DT 6 1_555 B DA 5 1_555 0.112 -0.348 0.242 2.287 -5.051 0.183 6 A_DT6:DA5_B A 6 ? B 5 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.278 -0.108 -0.217 14.295 -0.342 0.885 7 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.261 -0.081 0.407 -27.709 -5.961 -0.577 8 A_DC8:DG3_B A 8 ? B 3 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.364 -0.186 -0.228 3.766 5.693 -0.786 9 A_DG9:DC2_B A 9 ? B 2 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 0.062 -2.161 1.249 -15.691 -12.123 84.513 10 A_DG10:DC1_B A 10 ? B 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.047 1.685 2.699 -2.197 6.782 20.325 2.036 -0.928 3.070 18.498 5.994 21.527 1 AA_DC2DG3:DC8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.043 0.969 5.327 0.342 52.645 13.834 -5.349 0.089 2.340 76.317 -0.496 54.308 2 AA_DG3DG4:DC7DC8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DG 5 1_555 B DC 6 1_555 -0.982 0.390 3.181 -9.886 8.720 31.367 -0.779 0.040 3.321 15.310 17.357 33.960 3 AA_DG4DG5:DC6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DG 5 1_555 B DC 6 1_555 A DT 6 1_555 B DA 5 1_555 -0.207 -0.524 3.165 0.028 8.583 29.817 -2.546 0.392 2.905 16.260 -0.052 31.001 4 AA_DG5DT6:DA5DC6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DT 6 1_555 B DA 5 1_555 A DC 7 1_555 B DG 4 1_555 1.120 0.430 3.157 9.734 8.658 32.915 -0.613 -0.360 3.350 14.589 -16.401 35.333 5 AA_DT6DC7:DG4DA5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 0.049 0.981 5.355 -1.194 52.162 13.907 -5.403 -0.203 2.375 76.092 1.742 53.871 6 AA_DC7DC8:DG3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.011 1.692 2.714 2.994 5.747 19.269 2.447 1.253 3.047 16.574 -8.635 20.320 7 AA_DC8DG9:DC2DG3_BB A 8 ? B 3 ? A 9 ? B 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/K019279/1 1 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/M004635/1 2 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/P021328/1 3 # _space_group.crystal_system tetragonal _space_group.name_H-M_alt 'P 43' _space_group.IT_number 78 _space_group.name_Hall 'P 4cw' _space_group.id 1 # _atom_sites.entry_id 6G8S _atom_sites.fract_transf_matrix[1][1] 0.021165 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021165 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029428 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C N O P RU # loop_