HEADER RNA BINDING PROTEIN 10-APR-18 6G99 TITLE SOLUTION STRUCTURE OF FUS-ZNF BOUND TO UGGUG COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN FUS; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: 75 KDA DNA-PAIRING PROTEIN,ONCOGENE FUS,ONCOGENE TLS,POMP75, COMPND 5 TRANSLOCATED IN LIPOSARCOMA PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*UP*GP*GP*UP*G)-3'); COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FUS, TLS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS RNA ZINC FINGER RNA BINDING PROTEIN ZINC RIBBON, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.E.LOUGHLIN,F.H.-T.ALLAIN REVDAT 3 15-MAY-24 6G99 1 REMARK REVDAT 2 08-MAY-19 6G99 1 REMARK REVDAT 1 20-FEB-19 6G99 0 JRNL AUTH F.E.LOUGHLIN,P.J.LUKAVSKY,T.KAZEEVA,S.REBER,E.M.HOCK, JRNL AUTH 2 M.COLOMBO,C.VON SCHROETTER,P.PAULI,A.CLERY,O.MUHLEMANN, JRNL AUTH 3 M.POLYMENIDOU,M.D.RUEPP,F.H.ALLAIN JRNL TITL THE SOLUTION STRUCTURE OF FUS BOUND TO RNA REVEALS A JRNL TITL 2 BIPARTITE MODE OF RNA RECOGNITION WITH BOTH SEQUENCE AND JRNL TITL 3 SHAPE SPECIFICITY. JRNL REF MOL. CELL V. 73 490 2019 JRNL REFN ISSN 1097-4164 JRNL PMID 30581145 JRNL DOI 10.1016/J.MOLCEL.2018.11.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009562. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 278 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 20; 20 REMARK 210 PRESSURE : AMBIENT PA; AMBIENT PA REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 FUS-ZNF, 1.0 MM RNA (5'-R(*UP*GP* REMARK 210 GP*UP*G)-3'), 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM BETA- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O; REMARK 210 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 FUS-ZNF, 1.0 MM RNA (5'-R(*UP*GP* REMARK 210 GP*UP*G)-3'), 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM BETA- REMARK 210 MERCAPTOETHANOL, 100% D2O; 1.0 REMARK 210 MM [U-99% 15N] FUS-ZNF, 0.9 MM REMARK 210 RNA (5'-R(*UP*GP*GP*UP*G)-3'), REMARK 210 20 MM SODIUM PHOSPHATE, 1 MM REMARK 210 BETA-MERCAPTOETHANOL, 90% H2O/10% REMARK 210 D2O; 1.0 MM [U-99% 13C; U-99% REMARK 210 15N] FUS-ZNF, 0.9 MM RNA (5'-R(* REMARK 210 UP*GP*GP*UP*G)-3'), 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM BETA- REMARK 210 MERCAPTOETHANOL, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -15N NOESY; 2D 1H-1H NOESY; 2D REMARK 210 13C F2-FILTERED NOESY; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CANDID, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS B 433 -69.74 -121.94 REMARK 500 1 GLU B 434 17.08 53.07 REMARK 500 1 GLN B 446 -37.93 -135.41 REMARK 500 1 LYS B 448 15.87 58.41 REMARK 500 2 SER B 418 11.09 57.76 REMARK 500 2 CYS B 433 -70.05 -120.06 REMARK 500 2 GLN B 446 -32.95 -136.62 REMARK 500 2 LYS B 448 17.40 58.32 REMARK 500 3 GLN B 420 -39.60 -134.96 REMARK 500 3 GLN B 421 153.51 59.51 REMARK 500 3 CYS B 433 -68.68 -121.96 REMARK 500 3 GLU B 434 19.50 52.49 REMARK 500 3 GLN B 446 -32.06 -136.05 REMARK 500 3 LYS B 448 17.56 58.06 REMARK 500 4 GLU B 434 17.50 52.36 REMARK 500 4 GLN B 446 -33.81 -136.84 REMARK 500 4 LYS B 448 16.43 57.98 REMARK 500 5 GLU B 434 17.99 53.08 REMARK 500 5 GLN B 446 -33.63 -134.26 REMARK 500 5 LYS B 448 17.60 58.06 REMARK 500 6 GLU B 434 17.61 52.50 REMARK 500 6 GLN B 446 -33.84 -136.11 REMARK 500 6 LYS B 448 15.07 58.34 REMARK 500 7 GLU B 434 16.05 53.96 REMARK 500 7 GLN B 446 -32.49 -136.90 REMARK 500 7 LYS B 448 18.12 57.64 REMARK 500 8 CYS B 433 -68.98 -120.13 REMARK 500 8 GLN B 446 -33.45 -135.71 REMARK 500 8 LYS B 448 16.22 57.68 REMARK 500 9 LEU B 416 16.74 56.17 REMARK 500 9 GLN B 446 -33.59 -137.81 REMARK 500 9 LYS B 448 17.51 57.46 REMARK 500 10 GLU B 434 15.72 52.53 REMARK 500 10 GLN B 446 -41.14 -134.67 REMARK 500 10 LYS B 448 18.69 57.83 REMARK 500 11 GLN B 446 -30.78 -134.06 REMARK 500 11 LYS B 448 17.60 58.12 REMARK 500 12 CYS B 433 -68.87 -126.04 REMARK 500 12 GLU B 434 15.78 53.61 REMARK 500 12 GLN B 446 -32.42 -136.85 REMARK 500 12 LYS B 448 18.72 57.03 REMARK 500 13 CYS B 433 -71.61 -119.80 REMARK 500 13 GLU B 434 17.97 54.38 REMARK 500 13 GLN B 446 -32.81 -135.62 REMARK 500 13 LYS B 448 18.35 56.49 REMARK 500 14 SER B 418 16.45 57.06 REMARK 500 14 CYS B 433 -68.65 -120.41 REMARK 500 14 GLN B 446 -31.32 -133.99 REMARK 500 14 LYS B 448 18.58 56.32 REMARK 500 15 GLU B 434 17.12 53.06 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 428 SG REMARK 620 2 CYS B 433 SG 114.8 REMARK 620 3 CYS B 444 SG 113.7 102.6 REMARK 620 4 CYS B 447 SG 103.6 115.5 106.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34258 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF FUS-ZNF BOUND TO UGGUG DBREF 6G99 B 419 454 UNP P35637 FUS_HUMAN 419 454 DBREF 6G99 A 1 5 PDB 6G99 6G99 1 5 SEQADV 6G99 GLY B 414 UNP P35637 EXPRESSION TAG SEQADV 6G99 PRO B 415 UNP P35637 EXPRESSION TAG SEQADV 6G99 LEU B 416 UNP P35637 EXPRESSION TAG SEQADV 6G99 GLY B 417 UNP P35637 EXPRESSION TAG SEQADV 6G99 SER B 418 UNP P35637 EXPRESSION TAG SEQRES 1 B 41 GLY PRO LEU GLY SER GLY GLN GLN ARG ALA GLY ASP TRP SEQRES 2 B 41 LYS CYS PRO ASN PRO THR CYS GLU ASN MET ASN PHE SER SEQRES 3 B 41 TRP ARG ASN GLU CYS ASN GLN CYS LYS ALA PRO LYS PRO SEQRES 4 B 41 ASP GLY SEQRES 1 A 5 U G G U G HET ZN B 501 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ SHEET 1 AA1 2 TRP B 426 LYS B 427 0 SHEET 2 AA1 2 MET B 436 ASN B 437 -1 O ASN B 437 N TRP B 426 LINK SG CYS B 428 ZN ZN B 501 1555 1555 1.98 LINK SG CYS B 433 ZN ZN B 501 1555 1555 1.98 LINK SG CYS B 444 ZN ZN B 501 1555 1555 1.98 LINK SG CYS B 447 ZN ZN B 501 1555 1555 1.99 SITE 1 AC1 4 CYS B 428 CYS B 433 CYS B 444 CYS B 447 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1