HEADER HYDROLASE/ANTIBIOTIC 10-APR-18 6G9F TITLE STRUCTURAL BASIS FOR THE INHIBITION OF E. COLI PBP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN D,D-TRANSPEPTIDASE MRDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN 2,PBP-2; COMPND 5 EC: 3.4.16.4; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE SER 330 IN THE STRUCTURE IS MODIFIED COVALENTLY COMPND 8 AND IS NAMED (S31) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: MRDA, PBPA, B0635, JW0630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS PENICILLIN BINDING PROTEIN, HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.RUFF,N.LEVY REVDAT 3 17-JAN-24 6G9F 1 HETSYN REVDAT 2 05-FEB-20 6G9F 1 SOURCE DBREF SEQADV REVDAT 1 22-MAY-19 6G9F 0 JRNL AUTH N.LEVY,J.M.BRUNEAU,E.LE ROUZIC,D.BONNARD,F.LE STRAT, JRNL AUTH 2 A.CARAVANO,F.CHEVREUIL,J.BARBION,S.CHASSET,B.LEDOUSSAL, JRNL AUTH 3 F.MOREAU,M.RUFF JRNL TITL STRUCTURAL BASIS FOR E. COLI PENICILLIN BINDING PROTEIN JRNL TITL 2 (PBP) 2 INHIBITION, A PLATFORM FOR DRUG DESIGN. JRNL REF J.MED.CHEM. V. 62 4742 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 30995398 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00338 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 35639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 3754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0099 - 7.0360 0.97 2343 142 0.1533 0.1781 REMARK 3 2 7.0360 - 5.5899 0.97 2331 143 0.1742 0.2271 REMARK 3 3 5.5899 - 4.8848 0.96 2333 145 0.1508 0.1975 REMARK 3 4 4.8848 - 4.4389 0.97 2292 139 0.1403 0.1616 REMARK 3 5 4.4389 - 4.1211 0.97 2390 139 0.1519 0.1969 REMARK 3 6 4.1211 - 3.8784 0.97 2324 134 0.1644 0.2564 REMARK 3 7 3.8784 - 3.6843 0.97 2361 137 0.1769 0.2452 REMARK 3 8 3.6843 - 3.5240 0.98 2360 140 0.1813 0.2468 REMARK 3 9 3.5240 - 3.3884 0.98 2358 139 0.2012 0.2393 REMARK 3 10 3.3884 - 3.2716 0.99 2405 139 0.2113 0.2964 REMARK 3 11 3.2716 - 3.1693 0.99 2354 137 0.2200 0.3064 REMARK 3 12 3.1693 - 3.0788 0.99 2424 144 0.2485 0.2938 REMARK 3 13 3.0788 - 2.9977 0.99 2363 139 0.2394 0.3224 REMARK 3 14 2.9977 - 2.9246 1.00 2427 146 0.2403 0.2881 REMARK 3 15 2.9246 - 2.8582 0.99 2391 143 0.2468 0.3075 REMARK 3 16 2.8582 - 2.7974 1.00 2449 145 0.2584 0.3032 REMARK 3 17 2.7974 - 2.7414 0.99 2347 142 0.2733 0.2845 REMARK 3 18 2.7414 - 2.6897 0.99 2384 142 0.2781 0.2805 REMARK 3 19 2.6897 - 2.6417 1.00 2415 146 0.2998 0.3785 REMARK 3 20 2.6417 - 2.5969 1.00 2413 140 0.3025 0.3335 REMARK 3 21 2.5969 - 2.5550 0.99 2395 142 0.3044 0.3536 REMARK 3 22 2.5550 - 2.5157 0.99 2368 140 0.3134 0.3395 REMARK 3 23 2.5157 - 2.4787 0.99 2419 139 0.3072 0.3142 REMARK 3 24 2.4787 - 2.4438 0.98 2394 144 0.3173 0.4203 REMARK 3 25 2.4438 - 2.4108 0.94 2208 135 0.3243 0.3670 REMARK 3 26 2.4108 - 2.3795 0.89 2203 129 0.3223 0.3192 REMARK 3 27 2.3795 - 2.3498 0.77 1817 104 0.3194 0.3611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4386 REMARK 3 ANGLE : 0.971 5965 REMARK 3 CHIRALITY : 0.053 646 REMARK 3 PLANARITY : 0.007 774 REMARK 3 DIHEDRAL : 6.285 2622 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 28.9950 55.2310 38.5428 REMARK 3 T TENSOR REMARK 3 T11: 0.3710 T22: 0.3825 REMARK 3 T33: 0.3007 T12: -0.0529 REMARK 3 T13: -0.0141 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.5106 L22: 1.9455 REMARK 3 L33: 0.0129 L12: 1.4841 REMARK 3 L13: 0.2467 L23: 0.0109 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: 0.0046 S13: 0.0023 REMARK 3 S21: -0.0278 S22: -0.0026 S23: 0.0460 REMARK 3 S31: 0.0582 S32: -0.0198 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 39.005 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.14540 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 2.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6G9S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISBASE / BICINE PH 8,5 ; 0.1 M REMARK 280 [CARBOXYLIC ACIDS MIX (0.02 M SODIUM FORMATE ; 0.02 M AMMONIUM REMARK 280 ACETATE ; 0.02 M SODIUM CITRATE TRIBASIC DIHYDRATE ; 0.02 M REMARK 280 SODIUM POTASSIUM TARTRATE TETRAHYDRATE ; 0.02 M SODIUM OXAMATE) ; REMARK 280 24 % GLYCEROL ; 12 % PEG 4000] EQUILIBRATED AGAINST 2.0 M NACL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.38350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.38350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.53900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.43750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.53900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.43750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.38350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 62.53900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.43750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.38350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 62.53900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.43750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 734 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 770 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 796 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 808 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 55 REMARK 465 PRO A 56 REMARK 465 VAL A 550 REMARK 465 PHE A 551 REMARK 465 GLY A 552 REMARK 465 LEU A 553 REMARK 465 LYS A 554 REMARK 465 ALA A 555 REMARK 465 ASN A 556 REMARK 465 GLU A 557 REMARK 465 THR A 558 REMARK 465 TYR A 559 REMARK 465 ASN A 560 REMARK 465 ALA A 561 REMARK 465 HIS A 562 REMARK 465 LYS A 563 REMARK 465 ILE A 564 REMARK 465 ALA A 565 REMARK 465 GLU A 566 REMARK 465 ARG A 567 REMARK 465 GLY A 614 REMARK 465 ASP A 615 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 31.45 -65.18 REMARK 500 SER A 291 -160.05 -113.75 REMARK 500 THR A 315 67.12 39.90 REMARK 500 ALA A 329 -137.26 51.78 REMARK 500 ASP A 420 55.41 -91.14 REMARK 500 GLN A 455 -144.19 -122.71 REMARK 500 GLU A 489 107.95 73.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 822 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 823 DISTANCE = 6.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NXL A 1330 DBREF 6G9F A 57 615 UNP P0AD65 MRDA_ECOLI 57 615 SEQADV 6G9F GLY A 55 UNP P0AD65 EXPRESSION TAG SEQADV 6G9F PRO A 56 UNP P0AD65 EXPRESSION TAG SEQRES 1 A 561 GLY PRO ASN ARG ILE LYS LEU VAL PRO ILE ALA PRO SER SEQRES 2 A 561 ARG GLY ILE ILE TYR ASP ARG ASN GLY ILE PRO LEU ALA SEQRES 3 A 561 LEU ASN ARG THR ILE TYR GLN ILE GLU MET MET PRO GLU SEQRES 4 A 561 LYS VAL ASP ASN VAL GLN GLN THR LEU ASP ALA LEU ARG SEQRES 5 A 561 SER VAL VAL ASP LEU THR ASP ASP ASP ILE ALA ALA PHE SEQRES 6 A 561 ARG LYS GLU ARG ALA ARG SER HIS ARG PHE THR SER ILE SEQRES 7 A 561 PRO VAL LYS THR ASN LEU THR GLU VAL GLN VAL ALA ARG SEQRES 8 A 561 PHE ALA VAL ASN GLN TYR ARG PHE PRO GLY VAL GLU VAL SEQRES 9 A 561 LYS GLY TYR LYS ARG ARG TYR TYR PRO TYR GLY SER ALA SEQRES 10 A 561 LEU THR HIS VAL ILE GLY TYR VAL SER LYS ILE ASN ASP SEQRES 11 A 561 LYS ASP VAL GLU ARG LEU ASN ASN ASP GLY LYS LEU ALA SEQRES 12 A 561 ASN TYR ALA ALA THR HIS ASP ILE GLY LYS LEU GLY ILE SEQRES 13 A 561 GLU ARG TYR TYR GLU ASP VAL LEU HIS GLY GLN THR GLY SEQRES 14 A 561 TYR GLU GLU VAL GLU VAL ASN ASN ARG GLY ARG VAL ILE SEQRES 15 A 561 ARG GLN LEU LYS GLU VAL PRO PRO GLN ALA GLY HIS ASP SEQRES 16 A 561 ILE TYR LEU THR LEU ASP LEU LYS LEU GLN GLN TYR ILE SEQRES 17 A 561 GLU THR LEU LEU ALA GLY SER ARG ALA ALA VAL VAL VAL SEQRES 18 A 561 THR ASP PRO ARG THR GLY GLY VAL LEU ALA LEU VAL SER SEQRES 19 A 561 THR PRO SER TYR ASP PRO ASN LEU PHE VAL ASP GLY ILE SEQRES 20 A 561 SER SER LYS ASP TYR SER ALA LEU LEU ASN ASP PRO ASN SEQRES 21 A 561 THR PRO LEU VAL ASN ARG ALA THR GLN GLY VAL TYR PRO SEQRES 22 A 561 PRO ALA SER THR VAL LYS PRO TYR VAL ALA VAL SER ALA SEQRES 23 A 561 LEU SER ALA GLY VAL ILE THR ARG ASN THR THR LEU PHE SEQRES 24 A 561 ASP PRO GLY TRP TRP GLN LEU PRO GLY SER GLU LYS ARG SEQRES 25 A 561 TYR ARG ASP TRP LYS LYS TRP GLY HIS GLY ARG LEU ASN SEQRES 26 A 561 VAL THR ARG SER LEU GLU GLU SER ALA ASP THR PHE PHE SEQRES 27 A 561 TYR GLN VAL ALA TYR ASP MET GLY ILE ASP ARG LEU SER SEQRES 28 A 561 GLU TRP MET GLY LYS PHE GLY TYR GLY HIS TYR THR GLY SEQRES 29 A 561 ILE ASP LEU ALA GLU GLU ARG SER GLY ASN MET PRO THR SEQRES 30 A 561 ARG GLU TRP LYS GLN LYS ARG PHE LYS LYS PRO TRP TYR SEQRES 31 A 561 GLN GLY ASP THR ILE PRO VAL GLY ILE GLY GLN GLY TYR SEQRES 32 A 561 TRP THR ALA THR PRO ILE GLN MET SER LYS ALA LEU MET SEQRES 33 A 561 ILE LEU ILE ASN ASP GLY ILE VAL LYS VAL PRO HIS LEU SEQRES 34 A 561 LEU MET SER THR ALA GLU ASP GLY LYS GLN VAL PRO TRP SEQRES 35 A 561 VAL GLN PRO HIS GLU PRO PRO VAL GLY ASP ILE HIS SER SEQRES 36 A 561 GLY TYR TRP GLU LEU ALA LYS ASP GLY MET TYR GLY VAL SEQRES 37 A 561 ALA ASN ARG PRO ASN GLY THR ALA HIS LYS TYR PHE ALA SEQRES 38 A 561 SER ALA PRO TYR LYS ILE ALA ALA LYS SER GLY THR ALA SEQRES 39 A 561 GLN VAL PHE GLY LEU LYS ALA ASN GLU THR TYR ASN ALA SEQRES 40 A 561 HIS LYS ILE ALA GLU ARG LEU ARG ASP HIS LYS LEU MET SEQRES 41 A 561 THR ALA PHE ALA PRO TYR ASN ASN PRO GLN VAL ALA VAL SEQRES 42 A 561 ALA MET ILE LEU GLU ASN GLY GLY ALA GLY PRO ALA VAL SEQRES 43 A 561 GLY THR LEU MET ARG GLN ILE LEU ASP HIS ILE MET LEU SEQRES 44 A 561 GLY ASP HET NXL A1330 17 HETNAM NXL (2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2- HETNAM 2 NXL CARBOXAMIDE HETSYN NXL AVIBACTAM, BOUND FORM; NXL104, BOUND FORM FORMUL 2 NXL C7 H13 N3 O6 S FORMUL 3 HOH *123(H2 O) HELIX 1 AA1 PRO A 92 VAL A 95 5 4 HELIX 2 AA2 ASN A 97 ASP A 110 1 14 HELIX 3 AA3 THR A 112 ARG A 125 1 14 HELIX 4 AA4 THR A 139 GLN A 150 1 12 HELIX 5 AA5 TYR A 151 PHE A 153 5 3 HELIX 6 AA6 TYR A 168 ALA A 171 5 4 HELIX 7 AA7 LEU A 172 GLY A 177 1 6 HELIX 8 AA8 ASN A 183 ASP A 193 1 11 HELIX 9 AA9 LYS A 195 ALA A 200 5 6 HELIX 10 AB1 LEU A 208 TYR A 214 1 7 HELIX 11 AB2 TYR A 214 HIS A 219 1 6 HELIX 12 AB3 ASP A 255 LEU A 266 1 12 HELIX 13 AB4 PRO A 294 ASP A 299 1 6 HELIX 14 AB5 SER A 302 ASN A 311 1 10 HELIX 15 AB6 ASN A 319 GLY A 324 1 6 HELIX 16 AB7 PRO A 328 THR A 331 5 4 HELIX 17 AB8 VAL A 332 GLY A 344 1 13 HELIX 18 AB9 ASN A 379 SER A 387 1 9 HELIX 19 AC1 ASP A 389 PHE A 411 1 23 HELIX 20 AC2 THR A 431 LYS A 440 1 10 HELIX 21 AC3 TYR A 444 GLY A 452 1 9 HELIX 22 AC4 THR A 461 ASN A 474 1 14 HELIX 23 AC5 GLY A 510 ARG A 525 1 16 HELIX 24 AC6 ALA A 530 ALA A 535 1 6 HELIX 25 AC7 ASN A 593 GLY A 595 5 3 HELIX 26 AC8 ALA A 599 LEU A 613 1 15 SHEET 1 AA1 3 ARG A 58 ILE A 64 0 SHEET 2 AA1 3 GLY A 223 VAL A 229 -1 O VAL A 227 N LYS A 60 SHEET 3 AA1 3 VAL A 235 VAL A 242 -1 O LEU A 239 N GLU A 226 SHEET 1 AA2 3 ILE A 132 LYS A 135 0 SHEET 2 AA2 3 PRO A 78 MET A 90 -1 N ILE A 88 O VAL A 134 SHEET 3 AA2 3 VAL A 156 TYR A 165 -1 O ARG A 163 N ARG A 83 SHEET 1 AA3 6 ILE A 132 LYS A 135 0 SHEET 2 AA3 6 PRO A 78 MET A 90 -1 N ILE A 88 O VAL A 134 SHEET 3 AA3 6 ILE A 71 TYR A 72 -1 N ILE A 71 O LEU A 79 SHEET 4 AA3 6 ILE A 250 LEU A 252 1 O LEU A 252 N TYR A 72 SHEET 5 AA3 6 LEU A 484 THR A 487 -1 O MET A 485 N TYR A 251 SHEET 6 AA3 6 VAL A 494 PRO A 495 -1 O VAL A 494 N THR A 487 SHEET 1 AA4 2 VAL A 179 LYS A 181 0 SHEET 2 AA4 2 ASP A 204 GLY A 206 -1 O ILE A 205 N SER A 180 SHEET 1 AA5 2 GLY A 220 GLN A 221 0 SHEET 2 AA5 2 GLN A 245 ALA A 246 -1 O GLN A 245 N GLN A 221 SHEET 1 AA6 5 VAL A 283 THR A 289 0 SHEET 2 AA6 5 ALA A 271 THR A 276 -1 N VAL A 275 O ALA A 285 SHEET 3 AA6 5 VAL A 585 LEU A 591 -1 O ALA A 586 N THR A 276 SHEET 4 AA6 5 HIS A 571 ALA A 578 -1 N LYS A 572 O LEU A 591 SHEET 5 AA6 5 ALA A 542 ALA A 548 -1 N GLY A 546 O LEU A 573 SHEET 1 AA7 2 LEU A 352 ASP A 354 0 SHEET 2 AA7 2 GLY A 376 LEU A 378 -1 O LEU A 378 N LEU A 352 SHEET 1 AA8 2 TRP A 357 GLN A 359 0 SHEET 2 AA8 2 ARG A 366 ARG A 368 -1 O TYR A 367 N TRP A 358 LINK OG SER A 330 CAN NXL A1330 1555 1555 1.44 CISPEP 1 THR A 289 PRO A 290 0 -1.09 CISPEP 2 GLU A 489 ASP A 490 0 23.89 CISPEP 3 ALA A 578 PRO A 579 0 -13.81 SITE 1 AC1 12 ALA A 329 SER A 330 LYS A 333 TRP A 370 SITE 2 AC1 12 SER A 387 ASP A 389 ILE A 453 SER A 545 SITE 3 AC1 12 GLY A 546 THR A 547 HOH A 709 HOH A 738 CRYST1 125.078 182.875 74.767 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013375 0.00000