HEADER TRANSFERASE 11-APR-18 6G9W TITLE CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS UDP-N-ACETYLGLUCOSAMINE TITLE 2 PYROPHOSPHORYLASE IN COMPLEX WITH UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEOSARTORYA FUMIGATA (STRAIN ATCC MYA-4609 / SOURCE 3 AF293 / CBS 101355 / FGSC A1100); SOURCE 4 ORGANISM_COMMON: ASPERGILLUS FUMIGATUS; SOURCE 5 ORGANISM_TAXID: 330879; SOURCE 6 GENE: AFUA_7G02180; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASPERGILLUS FUMIGATUS, PYROPHOSPHORYLASE, CATALYSIS, CELL WALL, ANTI KEYWDS 2 FUNGAL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.G.RAIMI,R.HURTADO-GUERRERO,V.BORODIN,M.URBANIAK,M.FERGUSON,D.VAN AUTHOR 2 AALTEN REVDAT 3 17-JAN-24 6G9W 1 JRNL REVDAT 2 01-APR-20 6G9W 1 JRNL REVDAT 1 24-APR-19 6G9W 0 JRNL AUTH O.G.RAIMI,R.HURTADO-GUERRERO,V.BORODKIN,A.FERENBACH, JRNL AUTH 2 M.D.URBANIAK,M.A.J.FERGUSON,D.M.F.VAN AALTEN JRNL TITL A MECHANISM-INSPIRED UDP-N-ACETYLGLUCOSAMINE JRNL TITL 2 PYROPHOSPHORYLASE INHIBITOR JRNL REF RSC CHEM. BIOL. 2020 JRNL REFN ESSN 2633-0679 JRNL DOI 10.1039/C9CB00017H REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 45031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : -2.39000 REMARK 3 B33 (A**2) : 1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.390 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.276 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.201 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.401 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7544 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10188 ; 1.227 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 923 ; 5.777 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 338 ;35.057 ;24.675 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1339 ;15.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;13.917 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1114 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5631 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3363 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5121 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 300 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4781 ; 0.560 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7450 ; 0.957 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3116 ; 1.228 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2737 ; 1.938 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46020 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2YQS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE AND 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.35550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.14650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.14650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.35550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 VAL A 9 REMARK 465 SER A 10 REMARK 465 ASN A 11 REMARK 465 PHE A 12 REMARK 465 MET A 13 REMARK 465 GLU A 14 REMARK 465 ARG A 15 REMARK 465 PHE A 16 REMARK 465 HIS A 17 REMARK 465 GLY A 18 REMARK 465 HIS A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 ASN A 22 REMARK 465 LEU A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 25 REMARK 465 GLU A 26 REMARK 465 PRO A 85 REMARK 465 LYS A 86 REMARK 465 ALA A 87 REMARK 465 ASP A 88 REMARK 465 ASP A 89 REMARK 465 GLY A 90 REMARK 465 PRO A 386 REMARK 465 LYS A 389 REMARK 465 GLU A 390 REMARK 465 GLY A 391 REMARK 465 THR A 392 REMARK 465 GLY A 393 REMARK 465 GLU A 394 REMARK 465 PHE A 395 REMARK 465 PHE A 396 REMARK 465 LYS A 397 REMARK 465 PRO A 398 REMARK 465 GLU A 399 REMARK 465 LYS A 400 REMARK 465 ASP A 474 REMARK 465 VAL A 475 REMARK 465 GLU A 508 REMARK 465 GLU A 509 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 465 ALA B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 6 REMARK 465 GLU B 7 REMARK 465 THR B 8 REMARK 465 VAL B 9 REMARK 465 SER B 10 REMARK 465 ASN B 11 REMARK 465 PHE B 12 REMARK 465 MET B 13 REMARK 465 GLU B 14 REMARK 465 ARG B 15 REMARK 465 PHE B 16 REMARK 465 HIS B 17 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 465 PRO B 20 REMARK 465 GLU B 21 REMARK 465 ASN B 22 REMARK 465 LEU B 23 REMARK 465 PRO B 24 REMARK 465 ARG B 25 REMARK 465 GLU B 26 REMARK 465 LYS B 86 REMARK 465 ALA B 87 REMARK 465 ASP B 88 REMARK 465 ASP B 89 REMARK 465 GLY B 90 REMARK 465 PRO B 91 REMARK 465 GLY B 391 REMARK 465 THR B 392 REMARK 465 GLU B 472 REMARK 465 GLY B 473 REMARK 465 ASP B 474 REMARK 465 VAL B 475 REMARK 465 VAL B 476 REMARK 465 GLU B 508 REMARK 465 GLU B 509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 277 O3' UTP B 601 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 55 43.08 -87.44 REMARK 500 THR A 56 -50.48 67.73 REMARK 500 THR A 140 24.59 -79.66 REMARK 500 LEU A 319 -179.24 -172.11 REMARK 500 GLN A 345 73.17 -162.05 REMARK 500 TRP A 372 -5.45 -148.99 REMARK 500 SER B 314 39.90 -82.41 REMARK 500 GLN B 345 70.29 -156.32 REMARK 500 TRP B 372 -18.55 -142.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UTP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UTP B 601 DBREF 6G9W A 1 509 UNP Q4WAR0 Q4WAR0_ASPFU 1 509 DBREF 6G9W B 1 509 UNP Q4WAR0 Q4WAR0_ASPFU 1 509 SEQRES 1 A 509 MET ALA VAL ALA ILE LYS GLU THR VAL SER ASN PHE MET SEQRES 2 A 509 GLU ARG PHE HIS GLY HIS PRO GLU ASN LEU PRO ARG GLU SEQRES 3 A 509 PRO SER ALA GLU GLU PHE GLN GLN LEU ARG LYS LYS TYR SEQRES 4 A 509 THR ASP ALA GLY GLN GLY HIS VAL PHE ALA PHE VAL ASP SEQRES 5 A 509 GLU LEU GLN THR GLY GLU ARG SER GLN LEU PHE HIS GLN SEQRES 6 A 509 LEU SER SER PHE ASP PRO VAL ARG ILE ASN GLU LEU ALA SEQRES 7 A 509 ASP LYS ALA LEU ASN PRO PRO LYS ALA ASP ASP GLY PRO SEQRES 8 A 509 ALA SER LEU GLU PRO LEU PRO ASP ILE ALA THR ALA SER SEQRES 9 A 509 ILE LEU ASP SER ASP PRO LYS ASP LEU GLU GLN TRP TYR SEQRES 10 A 509 GLU GLU GLY LEU LYS LEU VAL ALA GLY ASN LYS VAL ALA SEQRES 11 A 509 VAL VAL LEU MET ALA GLY GLY GLN GLY THR ARG LEU GLY SEQRES 12 A 509 SER SER ALA PRO LYS GLY CYS PHE ASP ILE GLY LEU PRO SEQRES 13 A 509 SER HIS LYS SER LEU PHE GLN ILE GLN ALA GLU ARG ILE SEQRES 14 A 509 ALA LYS LEU GLN LEU LEU ALA GLN ARG ILE SER GLY LYS SEQRES 15 A 509 GLU ALA VAL ILE PRO TRP TYR VAL MET THR SER GLY PRO SEQRES 16 A 509 THR ARG LYS PRO THR GLU GLU PHE PHE GLU GLN HIS LYS SEQRES 17 A 509 TYR PHE GLY LEU ASN LYS SER ASP VAL ILE ILE PHE GLU SEQRES 18 A 509 GLN GLY VAL LEU PRO CYS ILE SER ASN GLU GLY LYS ILE SEQRES 19 A 509 LEU MET GLU SER LYS PHE LYS VAL ALA VAL ALA PRO ASP SEQRES 20 A 509 GLY ASN GLY GLY ILE TYR GLN ALA LEU LEU THR SER GLY SEQRES 21 A 509 VAL ARG GLU ASP MET ARG LYS ARG GLY ILE GLU HIS ILE SEQRES 22 A 509 HIS THR TYR CYS VAL ASP ASN CYS LEU VAL LYS VAL ALA SEQRES 23 A 509 ASP PRO VAL PHE ILE GLY PHE ALA ALA SER LYS GLN VAL SEQRES 24 A 509 ASP ILE ALA THR LYS VAL VAL ARG LYS ARG ASN ALA THR SEQRES 25 A 509 GLU SER VAL GLY LEU ILE LEU GLN LYS ASN GLY LYS PRO SEQRES 26 A 509 ASP VAL VAL GLU TYR SER GLU ILE ASP LYS GLU THR ALA SEQRES 27 A 509 GLU ALA LYS ASP PRO LYS GLN PRO ASP VAL LEU LYS PHE SEQRES 28 A 509 ARG ALA ALA ASN ILE VAL ASN HIS TYR TYR SER PHE LYS SEQRES 29 A 509 PHE PHE GLU SER ILE GLU LEU TRP ALA HIS LYS LEU PRO SEQRES 30 A 509 HIS HIS VAL ALA ARG LYS LYS ILE PRO CYS ILE LYS GLU SEQRES 31 A 509 GLY THR GLY GLU PHE PHE LYS PRO GLU LYS PRO ASN GLY SEQRES 32 A 509 ILE LYS LEU GLU GLN PHE VAL PHE ASP VAL PHE PRO MET SEQRES 33 A 509 THR PRO LEU GLU LYS PHE ALA CYS ILE GLU VAL ARG ARG SEQRES 34 A 509 GLU ASP GLU PHE SER PRO LEU LYS ASN ALA ARG GLY THR SEQRES 35 A 509 GLY GLU ASP ASP PRO ASP THR SER LYS ARG ASP ILE MET SEQRES 36 A 509 SER GLN GLY GLN ARG TRP ILE GLU LYS ALA GLY GLY ILE SEQRES 37 A 509 VAL ILE THR GLU GLY ASP VAL VAL GLY VAL GLU VAL SER SEQRES 38 A 509 PRO LEU ILE SER TYR GLY GLY GLU GLY LEU GLU PHE LEU SEQRES 39 A 509 LYS GLY ARG GLU ILE LYS ALA PRO ALA PHE ILE GLU LYS SEQRES 40 A 509 GLU GLU SEQRES 1 B 509 MET ALA VAL ALA ILE LYS GLU THR VAL SER ASN PHE MET SEQRES 2 B 509 GLU ARG PHE HIS GLY HIS PRO GLU ASN LEU PRO ARG GLU SEQRES 3 B 509 PRO SER ALA GLU GLU PHE GLN GLN LEU ARG LYS LYS TYR SEQRES 4 B 509 THR ASP ALA GLY GLN GLY HIS VAL PHE ALA PHE VAL ASP SEQRES 5 B 509 GLU LEU GLN THR GLY GLU ARG SER GLN LEU PHE HIS GLN SEQRES 6 B 509 LEU SER SER PHE ASP PRO VAL ARG ILE ASN GLU LEU ALA SEQRES 7 B 509 ASP LYS ALA LEU ASN PRO PRO LYS ALA ASP ASP GLY PRO SEQRES 8 B 509 ALA SER LEU GLU PRO LEU PRO ASP ILE ALA THR ALA SER SEQRES 9 B 509 ILE LEU ASP SER ASP PRO LYS ASP LEU GLU GLN TRP TYR SEQRES 10 B 509 GLU GLU GLY LEU LYS LEU VAL ALA GLY ASN LYS VAL ALA SEQRES 11 B 509 VAL VAL LEU MET ALA GLY GLY GLN GLY THR ARG LEU GLY SEQRES 12 B 509 SER SER ALA PRO LYS GLY CYS PHE ASP ILE GLY LEU PRO SEQRES 13 B 509 SER HIS LYS SER LEU PHE GLN ILE GLN ALA GLU ARG ILE SEQRES 14 B 509 ALA LYS LEU GLN LEU LEU ALA GLN ARG ILE SER GLY LYS SEQRES 15 B 509 GLU ALA VAL ILE PRO TRP TYR VAL MET THR SER GLY PRO SEQRES 16 B 509 THR ARG LYS PRO THR GLU GLU PHE PHE GLU GLN HIS LYS SEQRES 17 B 509 TYR PHE GLY LEU ASN LYS SER ASP VAL ILE ILE PHE GLU SEQRES 18 B 509 GLN GLY VAL LEU PRO CYS ILE SER ASN GLU GLY LYS ILE SEQRES 19 B 509 LEU MET GLU SER LYS PHE LYS VAL ALA VAL ALA PRO ASP SEQRES 20 B 509 GLY ASN GLY GLY ILE TYR GLN ALA LEU LEU THR SER GLY SEQRES 21 B 509 VAL ARG GLU ASP MET ARG LYS ARG GLY ILE GLU HIS ILE SEQRES 22 B 509 HIS THR TYR CYS VAL ASP ASN CYS LEU VAL LYS VAL ALA SEQRES 23 B 509 ASP PRO VAL PHE ILE GLY PHE ALA ALA SER LYS GLN VAL SEQRES 24 B 509 ASP ILE ALA THR LYS VAL VAL ARG LYS ARG ASN ALA THR SEQRES 25 B 509 GLU SER VAL GLY LEU ILE LEU GLN LYS ASN GLY LYS PRO SEQRES 26 B 509 ASP VAL VAL GLU TYR SER GLU ILE ASP LYS GLU THR ALA SEQRES 27 B 509 GLU ALA LYS ASP PRO LYS GLN PRO ASP VAL LEU LYS PHE SEQRES 28 B 509 ARG ALA ALA ASN ILE VAL ASN HIS TYR TYR SER PHE LYS SEQRES 29 B 509 PHE PHE GLU SER ILE GLU LEU TRP ALA HIS LYS LEU PRO SEQRES 30 B 509 HIS HIS VAL ALA ARG LYS LYS ILE PRO CYS ILE LYS GLU SEQRES 31 B 509 GLY THR GLY GLU PHE PHE LYS PRO GLU LYS PRO ASN GLY SEQRES 32 B 509 ILE LYS LEU GLU GLN PHE VAL PHE ASP VAL PHE PRO MET SEQRES 33 B 509 THR PRO LEU GLU LYS PHE ALA CYS ILE GLU VAL ARG ARG SEQRES 34 B 509 GLU ASP GLU PHE SER PRO LEU LYS ASN ALA ARG GLY THR SEQRES 35 B 509 GLY GLU ASP ASP PRO ASP THR SER LYS ARG ASP ILE MET SEQRES 36 B 509 SER GLN GLY GLN ARG TRP ILE GLU LYS ALA GLY GLY ILE SEQRES 37 B 509 VAL ILE THR GLU GLY ASP VAL VAL GLY VAL GLU VAL SER SEQRES 38 B 509 PRO LEU ILE SER TYR GLY GLY GLU GLY LEU GLU PHE LEU SEQRES 39 B 509 LYS GLY ARG GLU ILE LYS ALA PRO ALA PHE ILE GLU LYS SEQRES 40 B 509 GLU GLU HET UTP A 601 58 HET UTP B 601 29 HETNAM UTP URIDINE 5'-TRIPHOSPHATE FORMUL 3 UTP 2(C9 H15 N2 O15 P3) FORMUL 5 HOH *120(H2 O) HELIX 1 AA1 SER A 28 ALA A 42 1 15 HELIX 2 AA2 GLN A 44 ALA A 49 5 6 HELIX 3 AA3 PHE A 50 LEU A 54 5 5 HELIX 4 AA4 THR A 56 SER A 68 1 13 HELIX 5 AA5 ASP A 70 ASN A 83 1 14 HELIX 6 AA6 PRO A 98 ILE A 100 5 3 HELIX 7 AA7 ASP A 109 GLY A 126 1 18 HELIX 8 AA8 PRO A 147 PHE A 151 5 5 HELIX 9 AA9 SER A 160 GLY A 181 1 22 HELIX 10 AB1 SER A 193 HIS A 207 1 15 HELIX 11 AB2 LYS A 208 LEU A 212 5 5 HELIX 12 AB3 ASN A 213 SER A 215 5 3 HELIX 13 AB4 GLY A 248 GLY A 250 5 3 HELIX 14 AB5 GLY A 251 SER A 259 1 9 HELIX 15 AB6 GLY A 260 GLY A 269 1 10 HELIX 16 AB7 ASP A 287 LYS A 297 1 11 HELIX 17 AB8 GLU A 329 ILE A 333 5 5 HELIX 18 AB9 ASP A 334 ALA A 340 1 7 HELIX 19 AC1 PHE A 363 GLU A 367 1 5 HELIX 20 AC2 SER A 368 LEU A 376 5 9 HELIX 21 AC3 PHE A 409 PHE A 414 5 6 HELIX 22 AC4 PRO A 418 GLU A 420 5 3 HELIX 23 AC5 ARG A 428 PHE A 433 1 6 HELIX 24 AC6 ASP A 446 ALA A 465 1 20 HELIX 25 AC7 LEU A 491 LYS A 495 5 5 HELIX 26 AC8 SER B 28 ALA B 42 1 15 HELIX 27 AC9 GLN B 44 ALA B 49 5 6 HELIX 28 AD1 PHE B 50 LEU B 54 5 5 HELIX 29 AD2 GLN B 55 SER B 68 1 14 HELIX 30 AD3 ASP B 70 ASN B 83 1 14 HELIX 31 AD4 PRO B 98 ILE B 100 5 3 HELIX 32 AD5 ASP B 109 GLY B 126 1 18 HELIX 33 AD6 PRO B 147 PHE B 151 5 5 HELIX 34 AD7 SER B 160 GLY B 181 1 22 HELIX 35 AD8 SER B 193 HIS B 207 1 15 HELIX 36 AD9 LYS B 208 LEU B 212 5 5 HELIX 37 AE1 ASN B 213 SER B 215 5 3 HELIX 38 AE2 GLY B 248 GLY B 250 5 3 HELIX 39 AE3 GLY B 251 SER B 259 1 9 HELIX 40 AE4 GLY B 260 GLY B 269 1 10 HELIX 41 AE5 ASP B 287 LYS B 297 1 11 HELIX 42 AE6 GLU B 329 ILE B 333 5 5 HELIX 43 AE7 ASP B 334 ALA B 340 1 7 HELIX 44 AE8 PHE B 363 GLU B 367 1 5 HELIX 45 AE9 SER B 368 ALA B 373 1 6 HELIX 46 AF1 HIS B 374 LEU B 376 5 3 HELIX 47 AF2 PHE B 409 THR B 417 5 9 HELIX 48 AF3 PRO B 418 GLU B 420 5 3 HELIX 49 AF4 ARG B 428 PHE B 433 1 6 HELIX 50 AF5 ASP B 446 ALA B 465 1 20 HELIX 51 AF6 LEU B 491 LYS B 495 5 5 SHEET 1 AA1 3 LEU A 94 GLU A 95 0 SHEET 2 AA1 3 LEU A 317 LYS A 321 -1 O GLN A 320 N GLU A 95 SHEET 3 AA1 3 PRO A 325 VAL A 328 -1 O ASP A 326 N LEU A 319 SHEET 1 AA2 8 THR A 102 SER A 104 0 SHEET 2 AA2 8 PHE A 422 VAL A 427 1 O GLU A 426 N ALA A 103 SHEET 3 AA2 8 ILE A 301 ARG A 307 1 N THR A 303 O ILE A 425 SHEET 4 AA2 8 ALA A 353 SER A 362 -1 O TYR A 360 N ALA A 302 SHEET 5 AA2 8 HIS A 272 CYS A 277 -1 N THR A 275 O HIS A 359 SHEET 6 AA2 8 VAL A 129 MET A 134 1 N MET A 134 O TYR A 276 SHEET 7 AA2 8 TRP A 188 THR A 192 1 O MET A 191 N LEU A 133 SHEET 8 AA2 8 VAL A 217 GLU A 221 1 O PHE A 220 N THR A 192 SHEET 1 AA3 2 VAL A 224 PRO A 226 0 SHEET 2 AA3 2 VAL A 244 PRO A 246 -1 O ALA A 245 N LEU A 225 SHEET 1 AA4 2 MET A 236 SER A 238 0 SHEET 2 AA4 2 LYS A 241 VAL A 242 -1 O LYS A 241 N SER A 238 SHEET 1 AA5 2 LYS A 341 ASP A 342 0 SHEET 2 AA5 2 GLN A 345 LEU A 349 -1 O VAL A 348 N ASP A 342 SHEET 1 AA6 2 HIS A 379 LYS A 383 0 SHEET 2 AA6 2 GLY A 403 GLU A 407 -1 O GLU A 407 N HIS A 379 SHEET 1 AA7 2 ILE A 468 ILE A 470 0 SHEET 2 AA7 2 GLU A 498 LYS A 500 1 O ILE A 499 N ILE A 470 SHEET 1 AA8 2 VAL A 478 VAL A 480 0 SHEET 2 AA8 2 ALA A 503 ILE A 505 1 O ILE A 505 N GLU A 479 SHEET 1 AA9 3 LEU B 94 GLU B 95 0 SHEET 2 AA9 3 LEU B 317 LYS B 321 -1 O GLN B 320 N GLU B 95 SHEET 3 AA9 3 LYS B 324 VAL B 328 -1 O LYS B 324 N LYS B 321 SHEET 1 AB1 8 THR B 102 SER B 104 0 SHEET 2 AB1 8 PHE B 422 GLU B 426 1 O GLU B 426 N ALA B 103 SHEET 3 AB1 8 ILE B 301 ARG B 307 1 N THR B 303 O ILE B 425 SHEET 4 AB1 8 ALA B 353 SER B 362 -1 O TYR B 360 N ALA B 302 SHEET 5 AB1 8 HIS B 272 CYS B 277 -1 N THR B 275 O HIS B 359 SHEET 6 AB1 8 VAL B 129 ALA B 135 1 N MET B 134 O TYR B 276 SHEET 7 AB1 8 TRP B 188 THR B 192 1 O MET B 191 N LEU B 133 SHEET 8 AB1 8 VAL B 217 GLU B 221 1 O PHE B 220 N THR B 192 SHEET 1 AB2 2 VAL B 224 PRO B 226 0 SHEET 2 AB2 2 VAL B 244 PRO B 246 -1 O ALA B 245 N LEU B 225 SHEET 1 AB3 3 ILE B 228 SER B 229 0 SHEET 2 AB3 3 GLY B 403 GLU B 407 -1 O ILE B 404 N ILE B 228 SHEET 3 AB3 3 HIS B 379 LYS B 383 -1 N HIS B 379 O GLU B 407 SHEET 1 AB4 2 MET B 236 SER B 238 0 SHEET 2 AB4 2 LYS B 241 VAL B 242 -1 O LYS B 241 N GLU B 237 SHEET 1 AB5 2 LYS B 341 ASP B 342 0 SHEET 2 AB5 2 GLN B 345 LEU B 349 -1 O VAL B 348 N ASP B 342 SHEET 1 AB6 2 CYS B 387 ILE B 388 0 SHEET 2 AB6 2 PHE B 395 PHE B 396 -1 O PHE B 396 N CYS B 387 SHEET 1 AB7 2 ILE B 468 ILE B 470 0 SHEET 2 AB7 2 GLU B 498 LYS B 500 1 O ILE B 499 N ILE B 468 SHEET 1 AB8 2 VAL B 478 VAL B 480 0 SHEET 2 AB8 2 ALA B 503 ILE B 505 1 O ILE B 505 N GLU B 479 CISPEP 1 ALA A 501 PRO A 502 0 -2.11 CISPEP 2 ALA B 501 PRO B 502 0 -6.05 SITE 1 AC1 20 MET A 134 ALA A 135 GLY A 136 GLY A 137 SITE 2 AC1 20 GLN A 138 GLY A 139 THR A 140 ARG A 141 SITE 3 AC1 20 LYS A 148 MET A 191 GLN A 222 PRO A 246 SITE 4 AC1 20 GLY A 248 ASN A 249 CYS A 277 VAL A 278 SITE 5 AC1 20 LYS A 383 GLU A 407 GLN A 408 LYS A 437 SITE 1 AC2 17 MET B 134 ALA B 135 GLY B 136 GLY B 137 SITE 2 AC2 17 GLN B 138 GLY B 139 THR B 140 ARG B 141 SITE 3 AC2 17 LYS B 148 MET B 191 GLN B 222 PRO B 246 SITE 4 AC2 17 GLY B 248 ASN B 249 CYS B 277 VAL B 278 SITE 5 AC2 17 HOH B 704 CRYST1 56.711 139.980 146.293 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017633 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006836 0.00000