HEADER IMMUNE SYSTEM 13-APR-18 6GB6 TITLE STRUCTURE OF H-2KB WITH DIPEPTIDE GL COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: H-2K(B); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: E, B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-K1, H2-K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MHC, MHC-I, H-2KB, H-2K(B), IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.HAFSTRAND,T.SANDALOVA,A.ACHOUR REVDAT 4 17-JAN-24 6GB6 1 REMARK REVDAT 3 20-MAR-19 6GB6 1 JRNL REVDAT 2 13-MAR-19 6GB6 1 COMPND SOURCE JRNL REMARK REVDAT 2 2 1 DBREF SEQADV SEQRES SITE REVDAT 2 3 1 ATOM REVDAT 1 06-MAR-19 6GB6 0 JRNL AUTH I.HAFSTRAND,E.C.SAYITOGLU,A.APAVALOAEI,B.J.JOSEY,R.SUN, JRNL AUTH 2 X.HAN,S.PELLEGRINO,D.OZKAZANC,R.POTENS,L.JANSSEN, JRNL AUTH 3 J.NILVEBRANT,P.A.NYGREN,T.SANDALOVA,S.SPRINGER, JRNL AUTH 4 A.M.GEORGOUDAKI,A.D.DURU,A.ACHOUR JRNL TITL SUCCESSIVE CRYSTAL STRUCTURE SNAPSHOTS SUGGEST THE BASIS FOR JRNL TITL 2 MHC CLASS I PEPTIDE LOADING AND EDITING BY TAPASIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 5055 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 30808808 JRNL DOI 10.1073/PNAS.1807656116 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 82002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6093 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 311 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 636 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : 3.03000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.178 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6263 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5631 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8530 ; 1.346 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12967 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 756 ; 5.939 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 305 ;30.324 ;23.574 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 981 ;13.150 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;18.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 889 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7127 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1491 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3021 ; 1.875 ; 3.044 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3020 ; 1.875 ; 3.044 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3769 ; 3.107 ; 4.551 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3770 ; 3.107 ; 4.551 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3242 ; 2.190 ; 3.262 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3242 ; 2.189 ; 3.262 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4759 ; 3.590 ; 4.790 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7320 ; 6.311 ;25.424 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7054 ; 6.051 ;25.065 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82002 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 83.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.15 M NA/K PHOSPHATE, 15% MPD, PH REMARK 280 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.12000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 174 REMARK 465 GLY A 175 REMARK 465 ASN A 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 66 CE NZ REMARK 470 ARG A 111 CD NE CZ NH1 NH2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 157 CD NE CZ NH1 NH2 REMARK 470 LYS A 186 CD CE NZ REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 ILE A 225 CG1 CG2 CD1 REMARK 470 GLN A 226 CG CD OE1 NE2 REMARK 470 ASP A 227 CG OD1 OD2 REMARK 470 GLU D 41 CG CD OE1 OE2 REMARK 470 ARG D 79 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 89 CG CD CE NZ REMARK 470 ARG D 111 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 131 CG CD CE NZ REMARK 470 LYS D 146 CG CD CE NZ REMARK 470 GLN D 149 CG CD OE1 NE2 REMARK 470 GLU D 154 CG CD OE1 OE2 REMARK 470 ARG D 155 CD NE CZ NH1 NH2 REMARK 470 LYS D 173 CG CD CE NZ REMARK 470 GLU D 196 CG CD OE1 OE2 REMARK 470 GLU D 222 CG CD OE1 OE2 REMARK 470 ILE D 225 CG1 CG2 CD1 REMARK 470 GLN D 226 CG CD OE1 NE2 REMARK 470 LYS E 48 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY A 302 N LEU A 303 1.33 REMARK 500 C GLY D 303 N LEU D 304 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 178 -11.44 -42.54 REMARK 500 GLU A 196 -124.29 62.41 REMARK 500 ASP D 30 19.69 58.77 REMARK 500 TYR D 123 -63.61 -120.76 REMARK 500 ARG D 181 124.00 -34.86 REMARK 500 GLU D 196 -133.14 60.61 REMARK 500 TRP E 60 -9.13 83.56 REMARK 500 TRP B 60 -9.58 84.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY A 302 REMARK 610 GLY D 303 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LEU A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LEU D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 101 DBREF 6GB6 A 1 276 UNP P01901 HA1B_MOUSE 22 297 DBREF 6GB6 D 1 276 UNP P01901 HA1B_MOUSE 22 297 DBREF 6GB6 E 0 99 UNP P01887 B2MG_MOUSE 20 119 DBREF 6GB6 B 0 99 UNP P01887 B2MG_MOUSE 20 119 SEQADV 6GB6 GLY E 0 UNP P01887 ALA 20 CONFLICT SEQADV 6GB6 ASP E 85 UNP P01887 ALA 105 VARIANT SEQADV 6GB6 GLY B 0 UNP P01887 ALA 20 CONFLICT SEQADV 6GB6 ASP B 85 UNP P01887 ALA 105 VARIANT SEQRES 1 A 276 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 A 276 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 A 276 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 A 276 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 8 A 276 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 A 276 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 A 276 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 A 276 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 A 276 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 276 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 276 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 A 276 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 276 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 276 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 A 276 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 D 276 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 D 276 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 D 276 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 276 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 D 276 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 D 276 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 D 276 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 8 D 276 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 D 276 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 D 276 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 D 276 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 D 276 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 D 276 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 D 276 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 D 276 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 D 276 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 276 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 D 276 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 D 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 D 276 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 D 276 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 D 276 TRP GLU PRO SEQRES 1 E 100 GLY ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 E 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 E 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 E 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 E 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 E 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 E 100 TYR ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO SEQRES 8 E 100 LYS THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 B 100 GLY ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 B 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 B 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 B 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 B 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 B 100 TYR ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO SEQRES 8 B 100 LYS THR VAL TYR TRP ASP ARG ASP MET HET GOL A 301 6 HET GLY A 302 4 HET LEU A 303 9 HET GOL D 301 6 HET GOL D 302 6 HET GLY D 303 4 HET LEU D 304 9 HET GOL E 101 6 HETNAM GOL GLYCEROL HETNAM GLY GLYCINE HETNAM LEU LEUCINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 6 GLY 2(C2 H5 N O2) FORMUL 7 LEU 2(C6 H13 N O2) FORMUL 13 HOH *636(H2 O) HELIX 1 AA1 TRP A 51 GLU A 55 5 5 HELIX 2 AA2 GLY A 56 ASN A 86 1 31 HELIX 3 AA3 ASP A 137 GLN A 149 1 13 HELIX 4 AA4 GLY A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 TYR A 171 1 10 HELIX 6 AA6 LYS A 253 GLN A 255 5 3 HELIX 7 AA7 ALA D 49 GLU D 55 5 7 HELIX 8 AA8 GLY D 56 TYR D 85 1 30 HELIX 9 AA9 ASP D 137 GLY D 151 1 15 HELIX 10 AB1 GLY D 151 GLY D 162 1 12 HELIX 11 AB2 GLY D 162 LEU D 180 1 19 HELIX 12 AB3 LYS D 253 GLN D 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O VAL A 34 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O SER A 99 N TYR A 7 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N GLU A 102 SHEET 7 AA1 8 CYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 SER A 193 0 SHEET 2 AA2 4 LYS A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 LYS A 186 SER A 193 0 SHEET 2 AA3 4 LYS A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 GLU A 223 0 SHEET 2 AA4 4 THR A 214 LEU A 219 -1 N LEU A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 TYR A 262 -1 O TYR A 262 N THR A 214 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 8 GLU D 46 PRO D 47 0 SHEET 2 AA5 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 AA5 8 ARG D 21 VAL D 28 -1 N GLU D 24 O PHE D 36 SHEET 4 AA5 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 AA5 8 THR D 94 VAL D 103 -1 O SER D 99 N TYR D 7 SHEET 6 AA5 8 LEU D 109 TYR D 118 -1 O TYR D 113 N GLY D 100 SHEET 7 AA5 8 CYS D 121 LEU D 126 -1 O ILE D 124 N TYR D 116 SHEET 8 AA5 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 AA6 4 LYS D 186 SER D 193 0 SHEET 2 AA6 4 LYS D 198 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AA6 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AA6 4 GLU D 229 LEU D 230 -1 N GLU D 229 O SER D 246 SHEET 1 AA7 4 LYS D 186 SER D 193 0 SHEET 2 AA7 4 LYS D 198 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AA7 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AA7 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AA8 4 GLU D 222 GLU D 223 0 SHEET 2 AA8 4 THR D 214 LEU D 219 -1 N LEU D 219 O GLU D 222 SHEET 3 AA8 4 TYR D 257 TYR D 262 -1 O TYR D 262 N THR D 214 SHEET 4 AA8 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 AA9 4 GLN E 6 SER E 11 0 SHEET 2 AA9 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AA9 4 PHE E 62 PHE E 70 -1 O ALA E 66 N CYS E 25 SHEET 4 AA9 4 GLU E 50 MET E 51 -1 N GLU E 50 O HIS E 67 SHEET 1 AB1 4 GLN E 6 SER E 11 0 SHEET 2 AB1 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB1 4 PHE E 62 PHE E 70 -1 O ALA E 66 N CYS E 25 SHEET 4 AB1 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 AB2 4 LYS E 44 LYS E 45 0 SHEET 2 AB2 4 GLU E 36 LYS E 41 -1 N LYS E 41 O LYS E 44 SHEET 3 AB2 4 TYR E 78 LYS E 83 -1 O ARG E 81 N GLN E 38 SHEET 4 AB2 4 LYS E 91 TYR E 94 -1 O LYS E 91 N VAL E 82 SHEET 1 AB3 4 GLN B 6 SER B 11 0 SHEET 2 AB3 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AB3 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AB3 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AB4 4 GLN B 6 SER B 11 0 SHEET 2 AB4 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AB4 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AB4 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AB5 4 LYS B 44 LYS B 45 0 SHEET 2 AB5 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AB5 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 AB5 4 LYS B 91 TYR B 94 -1 O VAL B 93 N CYS B 80 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.08 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.02 SSBOND 3 CYS D 101 CYS D 164 1555 1555 2.07 SSBOND 4 CYS D 203 CYS D 259 1555 1555 2.03 SSBOND 5 CYS E 25 CYS E 80 1555 1555 2.04 SSBOND 6 CYS B 25 CYS B 80 1555 1555 2.04 CISPEP 1 TYR A 209 PRO A 210 0 -3.33 CISPEP 2 TYR D 209 PRO D 210 0 -0.17 CISPEP 3 HIS E 31 PRO E 32 0 5.98 CISPEP 4 HIS B 31 PRO B 32 0 5.90 SITE 1 AC1 6 ARG A 6 PHE A 8 TYR A 27 ASP A 30 SITE 2 AC1 6 PHE B 56 TYR B 63 SITE 1 AC2 5 ASP A 77 LYS A 146 TRP A 147 LEU A 303 SITE 2 AC2 5 HOH A 530 SITE 1 AC3 8 ASP A 77 THR A 80 TYR A 84 THR A 143 SITE 2 AC3 8 LYS A 146 TRP A 147 GLY A 302 HOH A 422 SITE 1 AC4 2 GLN D 114 HOH D 539 SITE 1 AC5 8 TYR D 7 ARG D 62 GLU D 63 LYS D 66 SITE 2 AC5 8 TYR D 159 TRP D 167 TYR D 171 HOH D 513 SITE 1 AC6 3 ASP D 77 TRP D 147 LEU D 304 SITE 1 AC7 7 ASP D 77 THR D 80 TYR D 84 THR D 143 SITE 2 AC7 7 TRP D 147 GLY D 303 HOH D 414 SITE 1 AC8 7 PHE D 8 TYR D 27 ASP D 30 PHE E 56 SITE 2 AC8 7 TYR E 63 HOH E 228 HOH E 275 CRYST1 66.630 82.240 89.550 90.00 111.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015008 0.000000 0.005848 0.00000 SCALE2 0.000000 0.012160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011985 0.00000