HEADER TRANSFERASE 13-APR-18 6GBC TITLE THE STRUCTURE OF VARIANT R369A OF THE MO-INSERTASE DOMAIN CNX1E FROM TITLE 2 ARABIDOPSIS THALIANA IN COMPLEX WITH AMP AND MOLYBDATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MOLYBDENUM COFACTOR BIOSYNTHESIS ENZYME CNX1; COMPND 5 EC: 2.10.1.1,2.7.7.75; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CNX1, AT5G20990, F22D1.6, T10F18.20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RK5204; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGPLUS-CNX1E KEYWDS ARABIDOPSIS, ARABIDOPSIS PROTEINS, COENZYMES, METALLOPROTEINS, KEYWDS 2 CATALYTIC DOMAIN, NUCLEOTIDE BINDING, ENTROPIC ENZYME, ADENOSINE KEYWDS 3 MONOPHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KRAUSZE REVDAT 2 17-JAN-24 6GBC 1 LINK REVDAT 1 18-JUL-18 6GBC 0 JRNL AUTH J.KRAUSZE,T.W.HERCHER,D.ZWERSCHKE,M.L.KIRK,W.BLANKENFELDT, JRNL AUTH 2 R.R.MENDEL,T.KRUSE JRNL TITL THE FUNCTIONAL PRINCIPLE OF EUKARYOTIC MOLYBDENUM JRNL TITL 2 INSERTASES. JRNL REF BIOCHEM. J. V. 475 1739 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29717023 JRNL DOI 10.1042/BCJ20170935 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 70.9 REMARK 3 NUMBER OF REFLECTIONS : 51433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 2431 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.26 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 284 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2335 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 272 REMARK 3 BIN R VALUE (WORKING SET) : 0.2269 REMARK 3 BIN FREE R VALUE : 0.4097 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.23 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3125 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 385 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50260 REMARK 3 B22 (A**2) : 0.88300 REMARK 3 B33 (A**2) : -0.38050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.103 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.094 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.121 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.091 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6504 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11853 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1433 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 980 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6504 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 446 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7357 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.88 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.58 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 27.3632 19.4919 1.3557 REMARK 3 T TENSOR REMARK 3 T11: -0.0913 T22: -0.0828 REMARK 3 T33: -0.0527 T12: 0.0221 REMARK 3 T13: 0.0267 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.3204 L22: 0.4029 REMARK 3 L33: 1.0421 L12: 0.0259 REMARK 3 L13: 0.1256 L23: 0.0785 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: -0.0135 S13: 0.0954 REMARK 3 S21: -0.0008 S22: -0.0460 S23: 0.0342 REMARK 3 S31: -0.2008 S32: -0.0752 S33: -0.0280 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENDING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUN 1, 2017 REMARK 200 DATA SCALING SOFTWARE : STARANISO 1.10.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 65.771 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 16.2 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 1.43300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 5G2R REMARK 200 REMARK 200 REMARK: ISOMETRIC TETRAGONAL PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 0.1 M MES PH 6.5; REMARK 280 0.06 M SODIUM NITRATE, 0.06 M SODIUM PHOSPHATE, 0.06 M AMMONIUM REMARK 280 SULFATE; 20 % (V/V) PEG 500 MME, 10 % (W/V) PEG 8000; 0.015 M REMARK 280 SODIUM MOLYBDATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.92000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.95000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.77000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.92000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.95000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.77000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.92000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.95000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.77000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.92000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.95000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.77000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 65.84000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 CYS A 6 REMARK 465 CYS A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 THR A 309 REMARK 465 GLU A 310 REMARK 465 SER A 311 REMARK 465 MET A 312 REMARK 465 LEU A 313 REMARK 465 LYS A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 LEU A 447 REMARK 465 SER A 448 REMARK 465 GLU A 449 REMARK 465 PRO A 450 REMARK 465 ARG A 451 REMARK 465 SER A 452 REMARK 465 TRP A 453 REMARK 465 SER A 454 REMARK 465 HIS A 455 REMARK 465 PRO A 456 REMARK 465 GLN A 457 REMARK 465 PHE A 458 REMARK 465 GLU A 459 REMARK 465 LYS A 460 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ASP A 435 CG OD1 OD2 REMARK 470 ILE A 436 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ILE A 436 CB ILE A 436 3655 1.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 130 -66.21 -15.27 REMARK 500 SER A 269 -138.91 -94.45 REMARK 500 SER A 289 10.46 -141.47 REMARK 500 ASP A 435 106.54 -26.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 981 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 982 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 983 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 984 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 985 DISTANCE = 7.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP A 501 O2P REMARK 620 2 HOH A 616 O 93.4 REMARK 620 3 HOH A 635 O 91.7 174.8 REMARK 620 4 HOH A 636 O 171.0 89.9 84.8 REMARK 620 5 HOH A 808 O 92.2 91.8 88.7 96.0 REMARK 620 6 HOH A 838 O 92.0 85.6 93.4 79.9 175.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MOO A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDCM8 RELATED DB: SASBDB DBREF 6GBC A 1 450 UNP Q39054 CNX1_ARATH 1 450 SEQADV 6GBC ALA A 369 UNP Q39054 ARG 369 ENGINEERED MUTATION SEQADV 6GBC ARG A 451 UNP Q39054 EXPRESSION TAG SEQADV 6GBC SER A 452 UNP Q39054 EXPRESSION TAG SEQADV 6GBC TRP A 453 UNP Q39054 EXPRESSION TAG SEQADV 6GBC SER A 454 UNP Q39054 EXPRESSION TAG SEQADV 6GBC HIS A 455 UNP Q39054 EXPRESSION TAG SEQADV 6GBC PRO A 456 UNP Q39054 EXPRESSION TAG SEQADV 6GBC GLN A 457 UNP Q39054 EXPRESSION TAG SEQADV 6GBC PHE A 458 UNP Q39054 EXPRESSION TAG SEQADV 6GBC GLU A 459 UNP Q39054 EXPRESSION TAG SEQADV 6GBC LYS A 460 UNP Q39054 EXPRESSION TAG SEQRES 1 A 460 MET GLU GLY GLN GLY CYS CYS GLY GLY GLY GLY GLY LYS SEQRES 2 A 460 THR GLU MET ILE PRO THR GLU GLU ALA LEU ARG ILE VAL SEQRES 3 A 460 PHE GLY VAL SER LYS ARG LEU PRO PRO VAL ILE VAL SER SEQRES 4 A 460 LEU TYR GLU ALA LEU GLY LYS VAL LEU ALA GLU ASP ILE SEQRES 5 A 460 ARG ALA PRO ASP PRO LEU PRO PRO TYR PRO ALA SER VAL SEQRES 6 A 460 LYS ASP GLY TYR ALA VAL VAL ALA SER ASP GLY PRO GLY SEQRES 7 A 460 GLU TYR PRO VAL ILE THR GLU SER ARG ALA GLY ASN ASP SEQRES 8 A 460 GLY LEU GLY VAL THR VAL THR PRO GLY THR VAL ALA TYR SEQRES 9 A 460 VAL THR THR GLY GLY PRO ILE PRO ASP GLY ALA ASP ALA SEQRES 10 A 460 VAL VAL GLN VAL GLU ASP THR LYS VAL ILE GLY ASP VAL SEQRES 11 A 460 SER THR GLU SER LYS ARG VAL LYS ILE LEU ILE GLN THR SEQRES 12 A 460 LYS LYS GLY THR ASP ILE ARG ARG VAL GLY CSX ASP ILE SEQRES 13 A 460 GLU LYS ASP ALA THR VAL LEU THR THR GLY GLU ARG ILE SEQRES 14 A 460 GLY ALA SER GLU ILE GLY LEU LEU ALA THR ALA GLY VAL SEQRES 15 A 460 THR MET VAL LYS VAL TYR PRO MET PRO ILE VAL ALA ILE SEQRES 16 A 460 LEU SER THR GLY ASP GLU LEU VAL GLU PRO THR ALA GLY SEQRES 17 A 460 THR LEU GLY ARG GLY GLN ILE ARG ASP SER ASN ARG ALA SEQRES 18 A 460 MET LEU VAL ALA ALA VAL MET GLN GLN GLN CYS LYS VAL SEQRES 19 A 460 VAL ASP LEU GLY ILE VAL ARG ASP ASP ARG LYS GLU LEU SEQRES 20 A 460 GLU LYS VAL LEU ASP GLU ALA VAL SER SER GLY VAL ASP SEQRES 21 A 460 ILE ILE LEU THR SER GLY GLY VAL SER MET GLY ASP ARG SEQRES 22 A 460 ASP PHE VAL LYS PRO LEU LEU GLU GLU LYS GLY LYS VAL SEQRES 23 A 460 TYR PHE SER LYS VAL LEU MET LYS PRO GLY LYS PRO LEU SEQRES 24 A 460 THR PHE ALA GLU ILE ARG ALA LYS PRO THR GLU SER MET SEQRES 25 A 460 LEU GLY LYS THR VAL LEU ALA PHE GLY LEU PRO GLY ASN SEQRES 26 A 460 PRO VAL SER CYS LEU VAL CYS PHE ASN ILE PHE VAL VAL SEQRES 27 A 460 PRO THR ILE ARG GLN LEU ALA GLY TRP THR SER PRO HIS SEQRES 28 A 460 PRO LEU ARG VAL ARG LEU ARG LEU GLN GLU PRO ILE LYS SEQRES 29 A 460 SER ASP PRO ILE ALA PRO GLU PHE HIS ARG ALA ILE ILE SEQRES 30 A 460 LYS TRP LYS ASP ASN ASP GLY SER GLY THR PRO GLY PHE SEQRES 31 A 460 VAL ALA GLU SER THR GLY HIS GLN MET SER SER ARG LEU SEQRES 32 A 460 LEU SER MET ARG SER ALA ASN ALA LEU LEU GLU LEU PRO SEQRES 33 A 460 ALA THR GLY ASN VAL LEU SER ALA GLY SER SER VAL SER SEQRES 34 A 460 ALA ILE ILE VAL SER ASP ILE SER ALA PHE SER ILE ASP SEQRES 35 A 460 LYS LYS ALA SER LEU SER GLU PRO ARG SER TRP SER HIS SEQRES 36 A 460 PRO GLN PHE GLU LYS MODRES 6GBC CSX A 154 CYS MODIFIED RESIDUE HET CSX A 154 12 HET AMP A 501 35 HET MG A 502 1 HET EDO A 503 10 HET EDO A 504 10 HET EDO A 505 10 HET EDO A 506 10 HET MOO A 507 5 HETNAM CSX S-OXY CYSTEINE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MOO MOLYBDATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN MOO MOLYBDATE FORMUL 1 CSX C3 H7 N O3 S FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 MG MG 2+ FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 MOO MO O4 2- FORMUL 9 HOH *385(H2 O) HELIX 1 AA1 THR A 19 SER A 30 1 12 HELIX 2 AA2 TYR A 41 LEU A 44 5 4 HELIX 3 AA3 VAL A 72 GLY A 76 5 5 HELIX 4 AA4 GLY A 170 ALA A 180 1 11 HELIX 5 AA5 SER A 218 GLN A 230 1 13 HELIX 6 AA6 ASP A 243 SER A 257 1 15 HELIX 7 AA7 PHE A 275 GLY A 284 1 10 HELIX 8 AA8 ASN A 325 ALA A 345 1 21 HELIX 9 AA9 ARG A 402 ARG A 407 5 6 HELIX 10 AB1 ASP A 435 PHE A 439 5 5 SHEET 1 AA1 2 ILE A 17 PRO A 18 0 SHEET 2 AA1 2 VAL A 291 LEU A 292 1 O LEU A 292 N ILE A 17 SHEET 1 AA2 3 VAL A 36 SER A 39 0 SHEET 2 AA2 3 MET A 184 TYR A 188 -1 O VAL A 185 N VAL A 38 SHEET 3 AA2 3 VAL A 47 LEU A 48 -1 N VAL A 47 O TYR A 188 SHEET 1 AA3 2 ILE A 52 ARG A 53 0 SHEET 2 AA3 2 THR A 161 LEU A 163 -1 O LEU A 163 N ILE A 52 SHEET 1 AA4 2 ALA A 63 SER A 64 0 SHEET 2 AA4 2 ILE A 149 ARG A 150 -1 O ARG A 150 N ALA A 63 SHEET 1 AA5 6 ALA A 117 GLN A 120 0 SHEET 2 AA5 6 GLY A 68 VAL A 71 -1 N TYR A 69 O VAL A 119 SHEET 3 AA5 6 VAL A 102 VAL A 105 -1 O VAL A 105 N GLY A 68 SHEET 4 AA5 6 GLY A 78 SER A 86 1 N SER A 86 O TYR A 104 SHEET 5 AA5 6 ARG A 136 ILE A 139 -1 O ILE A 139 N GLY A 78 SHEET 6 AA5 6 THR A 124 ILE A 127 -1 N LYS A 125 O LYS A 138 SHEET 1 AA6 6 VAL A 234 VAL A 240 0 SHEET 2 AA6 6 VAL A 193 THR A 198 1 N ILE A 195 O LEU A 237 SHEET 3 AA6 6 ILE A 261 SER A 265 1 O LEU A 263 N ALA A 194 SHEET 4 AA6 6 LYS A 315 LEU A 322 1 O LEU A 318 N ILE A 262 SHEET 5 AA6 6 THR A 300 ALA A 306 -1 N ALA A 302 O ALA A 319 SHEET 6 AA6 6 LYS A 285 PHE A 288 -1 N LYS A 285 O GLU A 303 SHEET 1 AA7 2 LEU A 202 VAL A 203 0 SHEET 2 AA7 2 ILE A 215 ARG A 216 1 O ILE A 215 N VAL A 203 SHEET 1 AA8 6 ARG A 354 LEU A 359 0 SHEET 2 AA8 6 GLY A 389 SER A 394 1 O PHE A 390 N ARG A 358 SHEET 3 AA8 6 GLU A 371 LYS A 380 -1 N LYS A 380 O GLY A 389 SHEET 4 AA8 6 ALA A 411 LEU A 415 -1 O LEU A 413 N HIS A 373 SHEET 5 AA8 6 SER A 427 ILE A 432 -1 O SER A 429 N GLU A 414 SHEET 6 AA8 6 ARG A 354 LEU A 359 -1 N VAL A 355 O ALA A 430 SHEET 1 AA9 2 ILE A 363 LYS A 364 0 SHEET 2 AA9 2 VAL A 421 LEU A 422 -1 O LEU A 422 N ILE A 363 LINK C GLY A 153 N CSX A 154 1555 1555 1.34 LINK C CSX A 154 N ASP A 155 1555 1555 1.36 LINK O2P AMP A 501 MG MG A 502 1555 1555 1.98 LINK MG MG A 502 O HOH A 616 1555 1555 2.06 LINK MG MG A 502 O HOH A 635 1555 1555 2.13 LINK MG MG A 502 O HOH A 636 1555 1555 2.14 LINK MG MG A 502 O HOH A 808 1555 1555 2.04 LINK MG MG A 502 O HOH A 838 1555 3655 2.12 CISPEP 1 LEU A 58 PRO A 59 0 -9.05 CISPEP 2 LYS A 294 PRO A 295 0 -6.88 SITE 1 AC1 27 THR A 107 GLY A 108 ARG A 150 SER A 197 SITE 2 AC1 27 GLU A 201 LEU A 202 ILE A 215 ASP A 217 SITE 3 AC1 27 SER A 218 ASN A 219 GLY A 266 GLY A 267 SITE 4 AC1 27 SER A 269 GLY A 324 ASN A 325 MG A 502 SITE 5 AC1 27 HOH A 606 HOH A 611 HOH A 616 HOH A 635 SITE 6 AC1 27 HOH A 689 HOH A 704 HOH A 708 HOH A 808 SITE 7 AC1 27 HOH A 824 HOH A 828 HOH A 838 SITE 1 AC2 6 AMP A 501 HOH A 616 HOH A 635 HOH A 636 SITE 2 AC2 6 HOH A 808 HOH A 838 SITE 1 AC3 4 GLY A 166 TRP A 347 THR A 348 SER A 349 SITE 1 AC4 7 ALA A 171 SER A 172 GLU A 173 HOH A 683 SITE 2 AC4 7 HOH A 709 HOH A 732 HOH A 738 SITE 1 AC5 2 GLU A 50 HOH A 614 SITE 1 AC6 4 GLU A 85 TYR A 104 ASP A 272 HOH A 654 SITE 1 AC7 11 PRO A 295 GLY A 296 LYS A 297 PRO A 298 SITE 2 AC7 11 ASN A 325 SER A 328 SER A 400 HOH A 651 SITE 3 AC7 11 HOH A 658 HOH A 720 HOH A 818 CRYST1 65.840 123.900 131.540 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015188 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007602 0.00000