HEADER TRANSFERASE 13-APR-18 6GBF TITLE THE STRUCTURE OF VARIANT R369A OF THE MO-INSERTASE DOMAIN CNX1E FROM TITLE 2 ARABIDOPSIS THALIANA IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MOLYBDENUM COFACTOR BIOSYNTHESIS ENZYME CNX1; COMPND 5 EC: 2.10.1.1,2.7.7.75; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CNX1, AT5G20990, F22D1.6, T10F18.20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RK5204; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGPLUS-CNX1E KEYWDS ARABIDOPSIS, ARABIDOPSIS PROTEINS, COENZYMES, METALLOPROTEINS, KEYWDS 2 CATALYTIC DOMAIN, NUCLEOTIDE BINDING, ENTROPIC ENZYME, ADENOSINE KEYWDS 3 MONOPHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KRAUSZE REVDAT 2 17-JAN-24 6GBF 1 LINK REVDAT 1 18-JUL-18 6GBF 0 JRNL AUTH J.KRAUSZE,T.W.HERCHER,D.ZWERSCHKE,M.L.KIRK,W.BLANKENFELDT, JRNL AUTH 2 R.R.MENDEL,T.KRUSE JRNL TITL THE FUNCTIONAL PRINCIPLE OF EUKARYOTIC MOLYBDENUM JRNL TITL 2 INSERTASES. JRNL REF BIOCHEM. J. V. 475 1739 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29717023 JRNL DOI 10.1042/BCJ20170935 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.6 REMARK 3 NUMBER OF REFLECTIONS : 42206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2121 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.45 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 281 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2309 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 264 REMARK 3 BIN R VALUE (WORKING SET) : 0.2346 REMARK 3 BIN FREE R VALUE : 0.1749 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.05 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3090 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08480 REMARK 3 B22 (A**2) : 0.93420 REMARK 3 B33 (A**2) : -0.84940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.126 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.115 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.111 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6488 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11819 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1424 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 992 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6488 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 443 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7010 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.71 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.10 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 27.1825 19.5430 1.1463 REMARK 3 T TENSOR REMARK 3 T11: -0.0864 T22: -0.0824 REMARK 3 T33: -0.0523 T12: 0.0188 REMARK 3 T13: 0.0229 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.3195 L22: 0.3650 REMARK 3 L33: 1.0602 L12: 0.0271 REMARK 3 L13: 0.1315 L23: 0.0326 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0101 S13: 0.0885 REMARK 3 S21: -0.0002 S22: -0.0206 S23: 0.0342 REMARK 3 S31: -0.1981 S32: -0.0693 S33: -0.0318 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DATA WERE CORRECTED FOR ANISOTROPY REMARK 3 PRIOR TO REFINEMENT. REMARK 4 REMARK 4 6GBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUN 1, 2017 REMARK 200 DATA SCALING SOFTWARE : STARANISO 1.10.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42230 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.712 REMARK 200 RESOLUTION RANGE LOW (A) : 66.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 17.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 5G2R REMARK 200 REMARK 200 REMARK: ISOMETRIC TETRAGONAL PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 0.1 M MES PH 6.5; REMARK 280 0.06 M SODIUM NITRATE, 0.06 M SODIUM PHOSPHATE, 0.06 M AMMONIUM REMARK 280 SULFATE; 20 % (V/V) PEG 500 MME, 10 % PEG 8000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.34000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.01500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.34000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.01500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.98500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.34000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.01500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.98500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.34000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 66.03000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 CYS A 6 REMARK 465 CYS A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 GLU A 15 REMARK 465 VAL A 130 REMARK 465 SER A 131 REMARK 465 THR A 132 REMARK 465 GLU A 133 REMARK 465 THR A 309 REMARK 465 GLU A 310 REMARK 465 SER A 311 REMARK 465 MET A 312 REMARK 465 LEU A 313 REMARK 465 LYS A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 LEU A 447 REMARK 465 SER A 448 REMARK 465 GLU A 449 REMARK 465 PRO A 450 REMARK 465 ARG A 451 REMARK 465 SER A 452 REMARK 465 TRP A 453 REMARK 465 SER A 454 REMARK 465 HIS A 455 REMARK 465 PRO A 456 REMARK 465 GLN A 457 REMARK 465 PHE A 458 REMARK 465 GLU A 459 REMARK 465 LYS A 460 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LYS A 290 CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LYS A 364 CE NZ REMARK 470 ASP A 435 CG OD1 OD2 REMARK 470 ILE A 436 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ILE A 436 CB ILE A 436 3655 1.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 135 76.86 62.19 REMARK 500 SER A 269 -142.69 -93.32 REMARK 500 PRO A 298 25.51 -76.85 REMARK 500 ASP A 435 104.32 -32.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 991 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 992 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 993 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 995 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 996 DISTANCE = 7.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP A 501 O2P REMARK 620 2 HOH A 659 O 169.8 REMARK 620 3 HOH A 668 O 91.5 93.3 REMARK 620 4 HOH A 717 O 89.5 85.5 178.0 REMARK 620 5 HOH A 779 O 92.1 96.9 91.2 90.5 REMARK 620 6 HOH A 859 O 91.2 80.0 86.7 91.5 176.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDCM8 RELATED DB: SASBDB DBREF 6GBF A 1 450 UNP Q39054 CNX1_ARATH 1 450 SEQADV 6GBF ALA A 369 UNP Q39054 ARG 369 ENGINEERED MUTATION SEQADV 6GBF ARG A 451 UNP Q39054 EXPRESSION TAG SEQADV 6GBF SER A 452 UNP Q39054 EXPRESSION TAG SEQADV 6GBF TRP A 453 UNP Q39054 EXPRESSION TAG SEQADV 6GBF SER A 454 UNP Q39054 EXPRESSION TAG SEQADV 6GBF HIS A 455 UNP Q39054 EXPRESSION TAG SEQADV 6GBF PRO A 456 UNP Q39054 EXPRESSION TAG SEQADV 6GBF GLN A 457 UNP Q39054 EXPRESSION TAG SEQADV 6GBF PHE A 458 UNP Q39054 EXPRESSION TAG SEQADV 6GBF GLU A 459 UNP Q39054 EXPRESSION TAG SEQADV 6GBF LYS A 460 UNP Q39054 EXPRESSION TAG SEQRES 1 A 460 MET GLU GLY GLN GLY CYS CYS GLY GLY GLY GLY GLY LYS SEQRES 2 A 460 THR GLU MET ILE PRO THR GLU GLU ALA LEU ARG ILE VAL SEQRES 3 A 460 PHE GLY VAL SER LYS ARG LEU PRO PRO VAL ILE VAL SER SEQRES 4 A 460 LEU TYR GLU ALA LEU GLY LYS VAL LEU ALA GLU ASP ILE SEQRES 5 A 460 ARG ALA PRO ASP PRO LEU PRO PRO TYR PRO ALA SER VAL SEQRES 6 A 460 LYS ASP GLY TYR ALA VAL VAL ALA SER ASP GLY PRO GLY SEQRES 7 A 460 GLU TYR PRO VAL ILE THR GLU SER ARG ALA GLY ASN ASP SEQRES 8 A 460 GLY LEU GLY VAL THR VAL THR PRO GLY THR VAL ALA TYR SEQRES 9 A 460 VAL THR THR GLY GLY PRO ILE PRO ASP GLY ALA ASP ALA SEQRES 10 A 460 VAL VAL GLN VAL GLU ASP THR LYS VAL ILE GLY ASP VAL SEQRES 11 A 460 SER THR GLU SER LYS ARG VAL LYS ILE LEU ILE GLN THR SEQRES 12 A 460 LYS LYS GLY THR ASP ILE ARG ARG VAL GLY CSX ASP ILE SEQRES 13 A 460 GLU LYS ASP ALA THR VAL LEU THR THR GLY GLU ARG ILE SEQRES 14 A 460 GLY ALA SER GLU ILE GLY LEU LEU ALA THR ALA GLY VAL SEQRES 15 A 460 THR MET VAL LYS VAL TYR PRO MET PRO ILE VAL ALA ILE SEQRES 16 A 460 LEU SER THR GLY ASP GLU LEU VAL GLU PRO THR ALA GLY SEQRES 17 A 460 THR LEU GLY ARG GLY GLN ILE ARG ASP SER ASN ARG ALA SEQRES 18 A 460 MET LEU VAL ALA ALA VAL MET GLN GLN GLN CYS LYS VAL SEQRES 19 A 460 VAL ASP LEU GLY ILE VAL ARG ASP ASP ARG LYS GLU LEU SEQRES 20 A 460 GLU LYS VAL LEU ASP GLU ALA VAL SER SER GLY VAL ASP SEQRES 21 A 460 ILE ILE LEU THR SER GLY GLY VAL SER MET GLY ASP ARG SEQRES 22 A 460 ASP PHE VAL LYS PRO LEU LEU GLU GLU LYS GLY LYS VAL SEQRES 23 A 460 TYR PHE SER LYS VAL LEU MET LYS PRO GLY LYS PRO LEU SEQRES 24 A 460 THR PHE ALA GLU ILE ARG ALA LYS PRO THR GLU SER MET SEQRES 25 A 460 LEU GLY LYS THR VAL LEU ALA PHE GLY LEU PRO GLY ASN SEQRES 26 A 460 PRO VAL SER CYS LEU VAL CYS PHE ASN ILE PHE VAL VAL SEQRES 27 A 460 PRO THR ILE ARG GLN LEU ALA GLY TRP THR SER PRO HIS SEQRES 28 A 460 PRO LEU ARG VAL ARG LEU ARG LEU GLN GLU PRO ILE LYS SEQRES 29 A 460 SER ASP PRO ILE ALA PRO GLU PHE HIS ARG ALA ILE ILE SEQRES 30 A 460 LYS TRP LYS ASP ASN ASP GLY SER GLY THR PRO GLY PHE SEQRES 31 A 460 VAL ALA GLU SER THR GLY HIS GLN MET SER SER ARG LEU SEQRES 32 A 460 LEU SER MET ARG SER ALA ASN ALA LEU LEU GLU LEU PRO SEQRES 33 A 460 ALA THR GLY ASN VAL LEU SER ALA GLY SER SER VAL SER SEQRES 34 A 460 ALA ILE ILE VAL SER ASP ILE SER ALA PHE SER ILE ASP SEQRES 35 A 460 LYS LYS ALA SER LEU SER GLU PRO ARG SER TRP SER HIS SEQRES 36 A 460 PRO GLN PHE GLU LYS MODRES 6GBF CSX A 154 CYS MODIFIED RESIDUE HET CSX A 154 12 HET AMP A 501 35 HET MG A 502 1 HET EDO A 503 10 HET EDO A 504 10 HET ACT A 505 7 HET ACT A 506 7 HET ACT A 507 7 HETNAM CSX S-OXY CYSTEINE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSX C3 H7 N O3 S FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 MG MG 2+ FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 ACT 3(C2 H3 O2 1-) FORMUL 9 HOH *396(H2 O) HELIX 1 AA1 THR A 19 SER A 30 1 12 HELIX 2 AA2 TYR A 41 LEU A 44 5 4 HELIX 3 AA3 VAL A 72 GLY A 76 5 5 HELIX 4 AA4 GLY A 170 ALA A 180 1 11 HELIX 5 AA5 SER A 218 GLN A 230 1 13 HELIX 6 AA6 ASP A 243 SER A 257 1 15 HELIX 7 AA7 PHE A 275 GLY A 284 1 10 HELIX 8 AA8 ASN A 325 ALA A 345 1 21 HELIX 9 AA9 ARG A 402 ARG A 407 5 6 HELIX 10 AB1 ASP A 435 PHE A 439 5 5 SHEET 1 AA1 2 ILE A 17 PRO A 18 0 SHEET 2 AA1 2 VAL A 291 LEU A 292 1 O LEU A 292 N ILE A 17 SHEET 1 AA2 3 VAL A 36 SER A 39 0 SHEET 2 AA2 3 MET A 184 TYR A 188 -1 O VAL A 185 N VAL A 38 SHEET 3 AA2 3 VAL A 47 LEU A 48 -1 N VAL A 47 O TYR A 188 SHEET 1 AA3 2 ILE A 52 ARG A 53 0 SHEET 2 AA3 2 THR A 161 LEU A 163 -1 O LEU A 163 N ILE A 52 SHEET 1 AA4 2 ALA A 63 SER A 64 0 SHEET 2 AA4 2 ILE A 149 ARG A 150 -1 O ARG A 150 N ALA A 63 SHEET 1 AA5 6 ALA A 117 GLN A 120 0 SHEET 2 AA5 6 GLY A 68 VAL A 71 -1 N VAL A 71 O ALA A 117 SHEET 3 AA5 6 VAL A 102 VAL A 105 -1 O VAL A 105 N GLY A 68 SHEET 4 AA5 6 GLY A 78 SER A 86 1 N SER A 86 O TYR A 104 SHEET 5 AA5 6 ARG A 136 ILE A 139 -1 O ILE A 139 N GLY A 78 SHEET 6 AA5 6 THR A 124 ILE A 127 -1 N LYS A 125 O LYS A 138 SHEET 1 AA6 6 VAL A 234 VAL A 240 0 SHEET 2 AA6 6 VAL A 193 THR A 198 1 N ILE A 195 O LEU A 237 SHEET 3 AA6 6 ILE A 261 SER A 265 1 O LEU A 263 N ALA A 194 SHEET 4 AA6 6 THR A 316 LEU A 322 1 O LEU A 318 N ILE A 262 SHEET 5 AA6 6 THR A 300 ARG A 305 -1 N ILE A 304 O VAL A 317 SHEET 6 AA6 6 LYS A 285 PHE A 288 -1 N LYS A 285 O GLU A 303 SHEET 1 AA7 2 LEU A 202 VAL A 203 0 SHEET 2 AA7 2 ILE A 215 ARG A 216 1 O ILE A 215 N VAL A 203 SHEET 1 AA8 6 LEU A 353 LEU A 359 0 SHEET 2 AA8 6 GLY A 389 SER A 394 1 O PHE A 390 N ARG A 358 SHEET 3 AA8 6 GLU A 371 LYS A 380 -1 N LYS A 380 O GLY A 389 SHEET 4 AA8 6 ALA A 411 LEU A 415 -1 O LEU A 413 N HIS A 373 SHEET 5 AA8 6 SER A 427 ILE A 432 -1 O ILE A 431 N LEU A 412 SHEET 6 AA8 6 LEU A 353 LEU A 359 -1 N LEU A 353 O ILE A 432 SHEET 1 AA9 2 ILE A 363 LYS A 364 0 SHEET 2 AA9 2 VAL A 421 LEU A 422 -1 O LEU A 422 N ILE A 363 LINK C GLY A 153 N CSX A 154 1555 1555 1.34 LINK C CSX A 154 N ASP A 155 1555 1555 1.35 LINK O2P AMP A 501 MG MG A 502 1555 1555 2.06 LINK MG MG A 502 O HOH A 659 1555 1555 2.12 LINK MG MG A 502 O HOH A 668 1555 1555 2.07 LINK MG MG A 502 O HOH A 717 1555 1555 2.08 LINK MG MG A 502 O HOH A 779 1555 1555 2.08 LINK MG MG A 502 O HOH A 859 1555 3655 2.13 CISPEP 1 LEU A 58 PRO A 59 0 -6.43 CISPEP 2 LYS A 294 PRO A 295 0 -7.75 SITE 1 AC1 26 THR A 107 GLY A 108 SER A 197 GLU A 201 SITE 2 AC1 26 LEU A 202 ILE A 215 ASP A 217 SER A 218 SITE 3 AC1 26 ASN A 219 GLY A 266 GLY A 267 SER A 269 SITE 4 AC1 26 GLY A 324 ASN A 325 MG A 502 HOH A 605 SITE 5 AC1 26 HOH A 623 HOH A 625 HOH A 635 HOH A 668 SITE 6 AC1 26 HOH A 702 HOH A 717 HOH A 779 HOH A 800 SITE 7 AC1 26 HOH A 823 HOH A 859 SITE 1 AC2 6 AMP A 501 HOH A 659 HOH A 668 HOH A 717 SITE 2 AC2 6 HOH A 779 HOH A 859 SITE 1 AC3 4 GLY A 166 TRP A 347 THR A 348 SER A 349 SITE 1 AC4 6 SER A 172 GLU A 173 SER A 408 HOH A 615 SITE 2 AC4 6 HOH A 795 HOH A 803 SITE 1 AC5 3 ASP A 272 ASP A 274 HOH A 618 SITE 1 AC6 3 THR A 209 GLN A 214 HOH A 703 SITE 1 AC7 4 SER A 400 HOH A 622 HOH A 671 HOH A 677 CRYST1 66.030 123.970 132.680 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015145 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007537 0.00000