HEADER RNA BINDING PROTEIN 15-APR-18 6GBM TITLE SOLUTION STRUCTURE OF FUS-RRM BOUND TO STEM-LOOP RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN FUS; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: 75 KDA DNA-PAIRING PROTEIN,ONCOGENE FUS,ONCOGENE TLS,POMP75, COMPND 5 TRANSLOCATED IN LIPOSARCOMA PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'- COMPND 9 R(*GP*GP*CP*AP*GP*AP*UP*UP*AP*CP*AP*AP*UP*UP*CP*UP*AP*UP*UP*UP*GP*CP* COMPND 10 C)-3'); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FUS, TLS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS RNA, RNA RECOGNITION MOTIF, RRM, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.E.LOUGHLIN,F.H.-T.ALLAIN REVDAT 2 08-MAY-19 6GBM 1 REMARK REVDAT 1 20-FEB-19 6GBM 0 JRNL AUTH F.E.LOUGHLIN,P.J.LUKAVSKY,T.KAZEEVA,S.REBER,E.M.HOCK, JRNL AUTH 2 M.COLOMBO,C.VON SCHROETTER,P.PAULI,A.CLERY,O.MUHLEMANN, JRNL AUTH 3 M.POLYMENIDOU,M.D.RUEPP,F.H.ALLAIN JRNL TITL THE SOLUTION STRUCTURE OF FUS BOUND TO RNA REVEALS A JRNL TITL 2 BIPARTITE MODE OF RNA RECOGNITION WITH BOTH SEQUENCE AND JRNL TITL 3 SHAPE SPECIFICITY. JRNL REF MOL. CELL V. 73 490 2019 JRNL REFN ISSN 1097-4164 JRNL PMID 30581145 JRNL DOI 10.1016/J.MOLCEL.2018.11.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009708. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 FUS-RRM, 0.8 MM [U-99% 15N] RNA REMARK 210 STEM LOOP, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM BETA- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O; REMARK 210 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 FUS-RRM, 0.8 MM [U-99% 15N] STEM- REMARK 210 LOOP RNA, 20 MM SODIUM PHOSPHATE, REMARK 210 1 MM BETA-MERCAPTOETHANOL, 100% REMARK 210 D2O; 1 MM [U-99% 15N] FUS-RRM, REMARK 210 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 STEM-LOOP RNA, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM BETA- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O; REMARK 210 1.0 MM [U-99% 15N] FUS-RRM, 0.8 REMARK 210 MM [U-99% 13C; U-99% 15N] STEM- REMARK 210 LOOP RNA, 20 MM SODIUM PHOSPHATE, REMARK 210 1 MM BETA-MERCAPTOETHANOL, 100% REMARK 210 D2O; 1.0 MM [U-99% 15N] FUS-RRM, REMARK 210 1.0 MM [U-99% 15N] STEM-LOOP RNA, REMARK 210 20 MM SODIUM PHOSPHATE, 1 MM REMARK 210 BETA-MERCAPTOETHANOL, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY AROMATIC; 3D 1H REMARK 210 -15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 1H-1H NOESY; 2D 1H- REMARK 210 15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY, CANDID, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 11 U A 13 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 16 A A 12 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP B 355 108.23 -52.27 REMARK 500 1 SER B 360 19.28 53.99 REMARK 500 1 THR B 370 -154.81 -144.56 REMARK 500 2 LYS B 332 -108.79 -70.28 REMARK 500 2 ASP B 355 108.50 -52.29 REMARK 500 2 SER B 360 17.13 55.49 REMARK 500 2 THR B 370 -155.01 -147.65 REMARK 500 3 ASN B 281 31.79 -91.34 REMARK 500 3 SER B 360 19.50 53.31 REMARK 500 3 THR B 370 -155.93 -148.30 REMARK 500 4 ASN B 281 39.70 -84.61 REMARK 500 4 ASN B 295 24.40 -141.22 REMARK 500 4 LYS B 332 -101.62 -74.60 REMARK 500 4 ASP B 355 109.68 -49.19 REMARK 500 4 SER B 360 19.00 54.36 REMARK 500 4 THR B 370 -155.77 -134.45 REMARK 500 5 HIS B 278 12.50 59.58 REMARK 500 5 ASP B 280 17.68 51.74 REMARK 500 5 ASP B 283 26.90 -143.22 REMARK 500 5 LYS B 332 -107.03 -72.94 REMARK 500 5 ASP B 355 107.71 -53.08 REMARK 500 5 SER B 360 18.87 53.14 REMARK 500 5 ARG B 371 102.28 -51.27 REMARK 500 6 LYS B 332 -111.05 -72.75 REMARK 500 6 ASP B 355 109.52 -51.92 REMARK 500 6 SER B 360 18.77 54.11 REMARK 500 6 THR B 370 -154.04 -147.68 REMARK 500 6 PHE B 375 -26.41 -140.95 REMARK 500 7 SER B 360 17.69 55.19 REMARK 500 7 THR B 370 -158.91 -138.41 REMARK 500 8 ASP B 355 109.30 -52.28 REMARK 500 8 THR B 370 -130.95 -142.16 REMARK 500 8 ARG B 372 -39.17 60.76 REMARK 500 9 ASP B 280 150.46 60.95 REMARK 500 9 LYS B 332 -114.33 -73.56 REMARK 500 9 ASP B 355 109.23 -50.38 REMARK 500 9 SER B 360 17.94 55.24 REMARK 500 9 ARG B 371 70.23 -108.70 REMARK 500 9 ASN B 376 -9.25 -141.58 REMARK 500 10 LYS B 332 -100.62 -73.44 REMARK 500 10 SER B 360 18.96 53.91 REMARK 500 10 THR B 370 -152.57 -146.53 REMARK 500 11 ASN B 281 23.59 -78.63 REMARK 500 12 SER B 277 10.52 -150.26 REMARK 500 12 HIS B 278 -178.86 57.20 REMARK 500 12 SER B 360 18.51 54.19 REMARK 500 12 THR B 370 -157.10 -139.63 REMARK 500 13 LYS B 332 -103.45 -75.12 REMARK 500 13 SER B 360 17.29 55.32 REMARK 500 13 ARG B 371 75.66 -108.11 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 12 U A 13 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34259 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF FUS-RRM BOUND TO STEM-LOOP RNA DBREF 6GBM B 280 377 UNP P35637 FUS_HUMAN 280 377 DBREF 6GBM A 1 23 PDB 6GBM 6GBM 1 23 SEQADV 6GBM GLY B 276 UNP P35637 EXPRESSION TAG SEQADV 6GBM SER B 277 UNP P35637 EXPRESSION TAG SEQADV 6GBM HIS B 278 UNP P35637 EXPRESSION TAG SEQADV 6GBM MET B 279 UNP P35637 EXPRESSION TAG SEQRES 1 B 102 GLY SER HIS MET ASP ASN SER ASP ASN ASN THR ILE PHE SEQRES 2 B 102 VAL GLN GLY LEU GLY GLU ASN VAL THR ILE GLU SER VAL SEQRES 3 B 102 ALA ASP TYR PHE LYS GLN ILE GLY ILE ILE LYS THR ASN SEQRES 4 B 102 LYS LYS THR GLY GLN PRO MET ILE ASN LEU TYR THR ASP SEQRES 5 B 102 ARG GLU THR GLY LYS LEU LYS GLY GLU ALA THR VAL SER SEQRES 6 B 102 PHE ASP ASP PRO PRO SER ALA LYS ALA ALA ILE ASP TRP SEQRES 7 B 102 PHE ASP GLY LYS GLU PHE SER GLY ASN PRO ILE LYS VAL SEQRES 8 B 102 SER PHE ALA THR ARG ARG ALA ASP PHE ASN ARG SEQRES 1 A 23 G G C A G A U U A C A A U SEQRES 2 A 23 U C U A U U U G C C HELIX 1 AA1 THR B 297 LYS B 306 1 10 HELIX 2 AA2 ASP B 343 ASP B 355 1 13 HELIX 3 AA3 ARG B 371 ASN B 376 5 6 SHEET 1 AA1 4 ILE B 322 THR B 326 0 SHEET 2 AA1 4 LEU B 333 SER B 340 -1 O LYS B 334 N TYR B 325 SHEET 3 AA1 4 THR B 286 GLN B 290 -1 N VAL B 289 O ALA B 337 SHEET 4 AA1 4 LYS B 365 PHE B 368 -1 O SER B 367 N PHE B 288 SHEET 1 AA2 2 GLU B 358 PHE B 359 0 SHEET 2 AA2 2 ASN B 362 PRO B 363 -1 O ASN B 362 N PHE B 359 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1