HEADER VIRAL PROTEIN 16-APR-18 6GBP TITLE CRYSTAL STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF VP35 FROM EBOLA TITLE 2 VIRUS, MERCURY DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE COFACTOR VP35; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 FRAGMENT: OLIGOMERIZATION DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZAIRE EBOLAVIRUS; SOURCE 3 ORGANISM_TAXID: 186538; SOURCE 4 GENE: VP35; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS COILED-COIL, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.ZINZULA,I.NAGY,M.ORSINI,E.WEYHER-STINGL,W.BAUMEISTER,A.BRACHER REVDAT 3 16-JAN-19 6GBP 1 JRNL REVDAT 2 12-DEC-18 6GBP 1 COMPND JRNL REVDAT 1 10-OCT-18 6GBP 0 JRNL AUTH L.ZINZULA,I.NAGY,M.ORSINI,E.WEYHER-STINGL,A.BRACHER, JRNL AUTH 2 W.BAUMEISTER JRNL TITL STRUCTURES OF EBOLA AND RESTON VIRUS VP35 OLIGOMERIZATION JRNL TITL 2 DOMAINS AND COMPARATIVE BIOPHYSICAL CHARACTERIZATION IN ALL JRNL TITL 3 EBOLAVIRUS SPECIES. JRNL REF STRUCTURE V. 27 39 2019 JRNL REFN ISSN 1878-4186 JRNL PMID 30482729 JRNL DOI 10.1016/J.STR.2018.09.009 REMARK 2 REMARK 2 RESOLUTION. 3.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 14401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.686 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.511 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.358 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6GBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0080 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15726 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.490 REMARK 200 RESOLUTION RANGE LOW (A) : 46.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 16.70 REMARK 200 R MERGE (I) : 0.24200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 16.90 REMARK 200 R MERGE FOR SHELL (I) : 1.18900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE 2013/2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES-NAOH PH 7.5, 2.6 M NA REMARK 280 -ACETATE, VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.71050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.14350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.96150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.14350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.71050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.96150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 81 REMARK 465 HIS C 151 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 465 SER D 129 REMARK 465 HIS D 150 REMARK 465 HIS D 151 REMARK 465 HIS D 152 REMARK 465 HIS D 153 REMARK 465 MET G 81 REMARK 465 ILE I 128 REMARK 465 SER I 129 REMARK 465 SER I 130 REMARK 465 LEU I 131 REMARK 465 HIS I 148 REMARK 465 HIS I 149 REMARK 465 HIS I 150 REMARK 465 HIS I 151 REMARK 465 HIS I 152 REMARK 465 HIS I 153 REMARK 465 GLU J 147 REMARK 465 HIS J 148 REMARK 465 HIS J 149 REMARK 465 HIS J 150 REMARK 465 HIS J 151 REMARK 465 HIS J 152 REMARK 465 HIS J 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET C 81 CG SD CE REMARK 470 HIS C 148 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 149 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 147 CG CD OE1 OE2 REMARK 470 GLU E 84 CG CD OE1 OE2 REMARK 470 MET F 81 CG SD CE REMARK 470 LYS G 126 CG CD CE NZ REMARK 470 GLU G 137 CG CD OE1 OE2 REMARK 470 MET I 81 CG SD CE REMARK 470 LYS I 126 CG CD CE NZ REMARK 470 ARG I 133 CG CD NE CZ NH1 NH2 REMARK 470 MET J 81 CG SD CE REMARK 470 LYS J 119 CG CD CE NZ REMARK 470 LYS J 126 CG CD CE NZ REMARK 470 ILE J 128 CG1 CG2 CD1 REMARK 470 LEU J 131 CG CD1 CD2 REMARK 470 ARG J 133 CG CD NE CZ NH1 NH2 REMARK 470 GLU K 84 CG CD OE1 OE2 REMARK 470 LYS K 119 CG CD CE NZ REMARK 470 LYS K 126 CG CD CE NZ REMARK 470 ARG K 133 CG CD NE CZ NH1 NH2 REMARK 470 MET L 81 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU I 145 32.73 -97.79 REMARK 500 THR J 127 50.73 -96.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG K 201 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER K 129 O REMARK 620 2 SER K 129 OG 64.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG F 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG H 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG H 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG J 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG K 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG L 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG L 202 DBREF 6GBP A 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP B 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP C 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP D 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP E 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP F 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP G 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP H 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP I 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP J 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP K 82 145 UNP Q05127 VP35_EBOZM 82 145 DBREF 6GBP L 82 145 UNP Q05127 VP35_EBOZM 82 145 SEQADV 6GBP MET A 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU A 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU A 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS A 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS A 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS A 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS A 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS A 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS A 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET B 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU B 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU B 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS B 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS B 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS B 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS B 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS B 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS B 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET C 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU C 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU C 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS C 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS C 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS C 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS C 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS C 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS C 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET D 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU D 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU D 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS D 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS D 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS D 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS D 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS D 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS D 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET E 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU E 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU E 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS E 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS E 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS E 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS E 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS E 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS E 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET F 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU F 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU F 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS F 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS F 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS F 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS F 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS F 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS F 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET G 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU G 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU G 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS G 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS G 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS G 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS G 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS G 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS G 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET H 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU H 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU H 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS H 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS H 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS H 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS H 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS H 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS H 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET I 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU I 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU I 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS I 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS I 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS I 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS I 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS I 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS I 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET J 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU J 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU J 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS J 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS J 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS J 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS J 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS J 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS J 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET K 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU K 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU K 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS K 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS K 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS K 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS K 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS K 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS K 153 UNP Q05127 EXPRESSION TAG SEQADV 6GBP MET L 81 UNP Q05127 INITIATING METHIONINE SEQADV 6GBP LEU L 146 UNP Q05127 EXPRESSION TAG SEQADV 6GBP GLU L 147 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS L 148 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS L 149 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS L 150 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS L 151 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS L 152 UNP Q05127 EXPRESSION TAG SEQADV 6GBP HIS L 153 UNP Q05127 EXPRESSION TAG SEQRES 1 A 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 A 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 A 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 A 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 A 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 A 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 B 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 B 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 B 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 B 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 B 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 C 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 C 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 C 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 C 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 C 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 D 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 D 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 D 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 D 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 D 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 E 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 E 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 E 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 E 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 E 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 F 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 F 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 F 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 F 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 F 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 F 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 G 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 G 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 G 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 G 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 G 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 G 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 H 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 H 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 H 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 H 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 H 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 H 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 I 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 I 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 I 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 I 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 I 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 I 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 J 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 J 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 J 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 J 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 J 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 J 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 K 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 K 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 K 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 K 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 K 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 K 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 L 73 MET SER PHE GLU GLU VAL VAL GLN THR LEU ALA SER LEU SEQRES 2 L 73 ALA THR VAL VAL GLN GLN GLN THR ILE ALA SER GLU SER SEQRES 3 L 73 LEU GLU GLN ARG ILE THR SER LEU GLU ASN GLY LEU LYS SEQRES 4 L 73 PRO VAL TYR ASP MET ALA LYS THR ILE SER SER LEU ASN SEQRES 5 L 73 ARG VAL CYS ALA GLU MET VAL ALA LYS TYR ASP LEU LEU SEQRES 6 L 73 LEU GLU HIS HIS HIS HIS HIS HIS HET HG A 201 1 HET HG A 202 1 HET HG B 201 1 HET HG C 201 1 HET HG F 201 1 HET HG H 201 1 HET HG H 202 1 HET HG J 201 1 HET HG K 201 1 HET HG L 201 1 HET HG L 202 1 HETNAM HG MERCURY (II) ION FORMUL 13 HG 11(HG 2+) HELIX 1 AA1 SER A 82 LYS A 119 1 38 HELIX 2 AA2 PRO A 120 ASP A 123 5 4 HELIX 3 AA3 MET A 124 LYS A 141 1 18 HELIX 4 AA4 TYR A 142 HIS A 152 1 11 HELIX 5 AA5 SER B 82 HIS B 153 1 72 HELIX 6 AA6 SER C 82 GLY C 117 1 36 HELIX 7 AA7 LEU C 118 HIS C 148 1 31 HELIX 8 AA8 SER D 82 THR D 127 1 46 HELIX 9 AA9 LEU D 131 LEU D 146 1 16 HELIX 10 AB1 SER E 82 LEU E 118 1 37 HELIX 11 AB2 LYS E 119 ASP E 123 5 5 HELIX 12 AB3 MET E 124 LYS E 141 1 18 HELIX 13 AB4 TYR E 142 HIS E 152 1 11 HELIX 14 AB5 SER F 82 HIS F 153 1 72 HELIX 15 AB6 PHE G 83 ASP G 123 1 41 HELIX 16 AB7 ASP G 123 ALA G 140 1 18 HELIX 17 AB8 TYR G 142 HIS G 152 1 11 HELIX 18 AB9 SER H 82 HIS H 153 1 72 HELIX 19 AC1 SER I 82 GLY I 117 1 36 HELIX 20 AC2 LEU I 118 THR I 127 1 10 HELIX 21 AC3 ARG I 133 LEU I 145 1 13 HELIX 22 AC4 SER J 82 GLY J 117 1 36 HELIX 23 AC5 GLY J 117 THR J 127 1 11 HELIX 24 AC6 SER J 130 LEU J 146 1 17 HELIX 25 AC7 SER K 82 LYS K 119 1 38 HELIX 26 AC8 PRO K 120 TYR K 122 5 3 HELIX 27 AC9 ASP K 123 LYS K 141 1 19 HELIX 28 AD1 TYR K 142 HIS K 152 1 11 HELIX 29 AD2 SER L 82 HIS L 153 1 72 LINK OG SER A 129 HG HG A 202 1555 1555 3.11 LINK SG CYS B 135 HG HG B 201 1555 1555 3.18 LINK SG CYS F 135 HG HG F 201 1555 1555 2.72 LINK OD1 ASN H 132 HG HG H 202 1555 1555 2.59 LINK SG CYS J 135 HG HG J 201 1555 1555 2.52 LINK O SER K 129 HG HG K 201 1555 1555 3.09 LINK OG SER K 129 HG HG K 201 1555 1555 2.91 LINK OD1 ASN L 132 HG HG L 202 1555 1555 2.87 LINK SG CYS L 135 HG HG L 201 1555 1555 3.09 SITE 1 AC1 1 CYS A 135 SITE 1 AC2 4 SER A 129 ASN A 132 ARG C 133 CYS D 135 SITE 1 AC3 2 CYS B 135 LEU C 131 SITE 1 AC4 2 CYS C 135 ASN E 132 SITE 1 AC5 3 ASN A 132 CYS F 135 ALA F 136 SITE 1 AC6 2 CYS H 135 ASN K 132 SITE 1 AC7 2 ASN H 132 CYS K 135 SITE 1 AC8 2 SER G 129 CYS J 135 SITE 1 AC9 2 CYS I 135 SER K 129 SITE 1 AD1 3 ASN G 132 CYS L 135 ALA L 136 SITE 1 AD2 2 CYS G 135 ASN L 132 CRYST1 61.421 103.923 186.287 90.00 90.00 90.00 P 21 21 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016281 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005368 0.00000