HEADER OXIDOREDUCTASE 17-APR-18 6GCG TITLE COPPER NITRITE REDUCTASE FROM ACHROMOBACTER CYCLOCLASTES: LARGE TITLE 2 POLYMORPH DATASET 15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-CONTAINING NITRITE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CU-NIR; COMPND 5 EC: 1.7.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER CYCLOCLASTES; SOURCE 3 ORGANISM_TAXID: 223; SOURCE 4 GENE: NIRK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COPPER, DENITRIFICATION, SERIAL SYNCHROTRON CRYSTALLOGRAPHY, KEYWDS 2 POLYMORPHS, NITRITE REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.EBRAHIM,M.V.APPLEBY,D.AXFORD,J.BEALE,T.MORENO-CHICANO,D.A.SHERRELL, AUTHOR 2 R.W.STRANGE,R.L.OWEN,M.A.HOUGH REVDAT 3 17-JAN-24 6GCG 1 REMARK REVDAT 2 13-MAR-19 6GCG 1 JRNL REVDAT 1 30-JAN-19 6GCG 0 JRNL AUTH A.EBRAHIM,M.V.APPLEBY,D.AXFORD,J.BEALE,T.MORENO-CHICANO, JRNL AUTH 2 D.A.SHERRELL,R.W.STRANGE,M.A.HOUGH,R.L.OWEN JRNL TITL RESOLVING POLYMORPHS AND RADIATION-DRIVEN EFFECTS IN JRNL TITL 2 MICROCRYSTALS USING FIXED-TARGET SERIAL SYNCHROTRON JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 151 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30821704 JRNL DOI 10.1107/S2059798318010240 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.392 REMARK 3 FREE R VALUE TEST SET COUNT : 1581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5486 - 4.0005 1.00 2643 146 0.1273 0.1588 REMARK 3 2 4.0005 - 3.1765 1.00 2548 153 0.1368 0.1545 REMARK 3 3 3.1765 - 2.7753 1.00 2534 138 0.1607 0.2111 REMARK 3 4 2.7753 - 2.5217 1.00 2528 131 0.1733 0.2074 REMARK 3 5 2.5217 - 2.3410 1.00 2549 112 0.1753 0.2320 REMARK 3 6 2.3410 - 2.2031 1.00 2515 140 0.1753 0.2174 REMARK 3 7 2.2031 - 2.0928 1.00 2477 150 0.1870 0.2381 REMARK 3 8 2.0928 - 2.0017 1.00 2475 174 0.2189 0.2662 REMARK 3 9 2.0017 - 1.9247 1.00 2480 132 0.2538 0.3281 REMARK 3 10 1.9247 - 1.8582 1.00 2494 151 0.3283 0.4113 REMARK 3 11 1.8582 - 1.8002 1.00 2497 154 0.3523 0.3786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2604 REMARK 3 ANGLE : 0.885 3562 REMARK 3 CHIRALITY : 0.058 397 REMARK 3 PLANARITY : 0.006 470 REMARK 3 DIHEDRAL : 12.390 1512 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GCG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29321 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 978.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 0.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 799.0 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5I6K REMARK 200 REMARK 200 REMARK: MICROCRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BATCH MICROCRYSTALS WERE PREPARED BY REMARK 280 RAPIDLY MIXING 20 MG/ML ACNIR IN 20MM TRIS, PH 7.5 WITH A REMARK 280 SOLUTION CONTAINING 2.5 M AMMONIUM SULPHATE, 0.1 M SODIUM REMARK 280 CITRATE PH 4.5 BUFFER, IN A RATIO OF 1:3 AND MIXED BY VORTEXING REMARK 280 FOR 60 SECONDS. MICROCRYSTALS WITH A DIAMETER OF 5-15 MICRONS REMARK 280 GREW AT ROOM TEMPERATURE OVER A PERIOD OF 4-6 DAYS., BATCH MODE, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.99450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.99450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.99450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.99450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.99450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.99450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 48.99450 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 48.99450 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 48.99450 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 48.99450 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 48.99450 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 48.99450 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 48.99450 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 48.99450 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 48.99450 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 48.99450 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 48.99450 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 48.99450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 48.99450 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 48.99450 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 48.99450 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -48.99450 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -37 REMARK 465 THR A -36 REMARK 465 GLU A -35 REMARK 465 GLN A -34 REMARK 465 LEU A -33 REMARK 465 GLN A -32 REMARK 465 MET A -31 REMARK 465 THR A -30 REMARK 465 ARG A -29 REMARK 465 ARG A -28 REMARK 465 THR A -27 REMARK 465 MET A -26 REMARK 465 LEU A -25 REMARK 465 ALA A -24 REMARK 465 GLY A -23 REMARK 465 ALA A -22 REMARK 465 ALA A -21 REMARK 465 LEU A -20 REMARK 465 ALA A -19 REMARK 465 GLY A -18 REMARK 465 ALA A -17 REMARK 465 VAL A -16 REMARK 465 ALA A -15 REMARK 465 PRO A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 HIS A -11 REMARK 465 THR A -10 REMARK 465 ALA A -9 REMARK 465 GLN A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 ALA A -5 REMARK 465 ALA A -4 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 9 CD1 REMARK 470 SER A 10 OG REMARK 470 LYS A 16 CD CE NZ REMARK 470 LYS A 21 CE NZ REMARK 470 LYS A 33 CE NZ REMARK 470 LYS A 49 CE NZ REMARK 470 ARG A 54 CD NE CZ NH1 NH2 REMARK 470 LYS A 163 NZ REMARK 470 LYS A 166 CE NZ REMARK 470 LYS A 174 NZ REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 LYS A 195 CE NZ REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 LYS A 208 CD CE NZ REMARK 470 ARG A 296 CZ NH1 NH2 REMARK 470 LYS A 321 CD CE NZ REMARK 470 LYS A 336 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 137 69.26 -156.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 306 ASN A 307 145.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 CYS A 136 SG 133.8 REMARK 620 3 HIS A 145 ND1 97.8 109.7 REMARK 620 4 MET A 150 SD 85.9 105.6 125.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HIS A 135 NE2 107.3 REMARK 620 3 HIS A 306 NE2 72.6 95.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 502 DBREF 6GCG A -37 340 UNP P25006 NIR_ACHCY 1 378 SEQRES 1 A 378 MET THR GLU GLN LEU GLN MET THR ARG ARG THR MET LEU SEQRES 2 A 378 ALA GLY ALA ALA LEU ALA GLY ALA VAL ALA PRO LEU LEU SEQRES 3 A 378 HIS THR ALA GLN ALA HIS ALA ALA GLY ALA ALA ALA ALA SEQRES 4 A 378 ALA GLY ALA ALA PRO VAL ASP ILE SER THR LEU PRO ARG SEQRES 5 A 378 VAL LYS VAL ASP LEU VAL LYS PRO PRO PHE VAL HIS ALA SEQRES 6 A 378 HIS ASP GLN VAL ALA LYS THR GLY PRO ARG VAL VAL GLU SEQRES 7 A 378 PHE THR MET THR ILE GLU GLU LYS LYS LEU VAL ILE ASP SEQRES 8 A 378 ARG GLU GLY THR GLU ILE HIS ALA MET THR PHE ASN GLY SEQRES 9 A 378 SER VAL PRO GLY PRO LEU MET VAL VAL HIS GLU ASN ASP SEQRES 10 A 378 TYR VAL GLU LEU ARG LEU ILE ASN PRO ASP THR ASN THR SEQRES 11 A 378 LEU LEU HIS ASN ILE ASP PHE HIS ALA ALA THR GLY ALA SEQRES 12 A 378 LEU GLY GLY GLY ALA LEU THR GLN VAL ASN PRO GLY GLU SEQRES 13 A 378 GLU THR THR LEU ARG PHE LYS ALA THR LYS PRO GLY VAL SEQRES 14 A 378 PHE VAL TYR HIS CYS ALA PRO GLU GLY MET VAL PRO TRP SEQRES 15 A 378 HIS VAL THR SER GLY MET ASN GLY ALA ILE MET VAL LEU SEQRES 16 A 378 PRO ARG ASP GLY LEU LYS ASP GLU LYS GLY GLN PRO LEU SEQRES 17 A 378 THR TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP PHE SEQRES 18 A 378 TYR VAL PRO LYS ASP GLU ALA GLY ASN TYR LYS LYS TYR SEQRES 19 A 378 GLU THR PRO GLY GLU ALA TYR GLU ASP ALA VAL LYS ALA SEQRES 20 A 378 MET ARG THR LEU THR PRO THR HIS ILE VAL PHE ASN GLY SEQRES 21 A 378 ALA VAL GLY ALA LEU THR GLY ASP HIS ALA LEU THR ALA SEQRES 22 A 378 ALA VAL GLY GLU ARG VAL LEU VAL VAL HIS SER GLN ALA SEQRES 23 A 378 ASN ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS GLY SEQRES 24 A 378 ASP TYR VAL TRP ALA THR GLY LYS PHE ARG ASN PRO PRO SEQRES 25 A 378 ASP LEU ASP GLN GLU THR TRP LEU ILE PRO GLY GLY THR SEQRES 26 A 378 ALA GLY ALA ALA PHE TYR THR PHE ARG GLN PRO GLY VAL SEQRES 27 A 378 TYR ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE GLU SEQRES 28 A 378 LEU GLY ALA ALA GLY HIS PHE LYS VAL THR GLY GLU TRP SEQRES 29 A 378 ASN ASP ASP LEU MET THR SER VAL VAL LYS PRO ALA SER SEQRES 30 A 378 MET HET CU A 501 1 HET CU A 502 1 HETNAM CU COPPER (II) ION FORMUL 2 CU 2(CU 2+) FORMUL 4 HOH *113(H2 O) HELIX 1 AA1 ASP A 8 LEU A 12 5 5 HELIX 2 AA2 GLY A 104 THR A 112 5 9 HELIX 3 AA3 MET A 141 THR A 147 1 7 HELIX 4 AA4 THR A 198 THR A 212 1 15 HELIX 5 AA5 THR A 228 ALA A 232 5 5 HELIX 6 AA6 ASN A 307 GLU A 313 1 7 SHEET 1 AA1 3 ARG A 14 LYS A 16 0 SHEET 2 AA1 3 VAL A 38 VAL A 51 1 O GLU A 40 N VAL A 15 SHEET 3 AA1 3 GLU A 58 PHE A 64 -1 O ILE A 59 N LEU A 50 SHEET 1 AA2 4 ARG A 14 LYS A 16 0 SHEET 2 AA2 4 VAL A 38 VAL A 51 1 O GLU A 40 N VAL A 15 SHEET 3 AA2 4 TYR A 80 ASN A 87 1 O TYR A 80 N VAL A 39 SHEET 4 AA2 4 GLU A 118 LYS A 125 -1 O THR A 120 N LEU A 85 SHEET 1 AA3 4 LEU A 72 HIS A 76 0 SHEET 2 AA3 4 ASN A 151 LEU A 157 1 O MET A 155 N MET A 73 SHEET 3 AA3 4 GLY A 130 HIS A 135 -1 N GLY A 130 O VAL A 156 SHEET 4 AA3 4 ASP A 98 PHE A 99 -1 N ASP A 98 O HIS A 135 SHEET 1 AA4 2 LEU A 162 LYS A 163 0 SHEET 2 AA4 2 PRO A 169 LEU A 170 -1 O LEU A 170 N LEU A 162 SHEET 1 AA5 6 HIS A 217 PHE A 220 0 SHEET 2 AA5 6 LYS A 174 PHE A 183 -1 N PHE A 183 O HIS A 217 SHEET 3 AA5 6 ARG A 240 GLN A 247 1 O VAL A 244 N VAL A 178 SHEET 4 AA5 6 THR A 287 THR A 294 -1 O TYR A 293 N VAL A 241 SHEET 5 AA5 6 GLY A 261 TRP A 265 -1 N TRP A 265 O ALA A 290 SHEET 6 AA5 6 ASP A 275 GLN A 278 -1 O ASP A 275 N VAL A 264 SHEET 1 AA6 4 LEU A 233 ALA A 236 0 SHEET 2 AA6 4 ALA A 317 THR A 323 1 O LYS A 321 N LEU A 233 SHEET 3 AA6 4 GLY A 299 ASN A 305 -1 N GLY A 299 O VAL A 322 SHEET 4 AA6 4 PRO A 254 ILE A 257 -1 N ILE A 257 O ALA A 302 LINK ND1 HIS A 95 CU CU A 501 1555 1555 2.08 LINK NE2 HIS A 100 CU CU A 502 1555 1555 2.03 LINK NE2 HIS A 135 CU CU A 502 1555 1555 2.12 LINK SG CYS A 136 CU CU A 501 1555 1555 2.15 LINK ND1 HIS A 145 CU CU A 501 1555 1555 2.05 LINK SD MET A 150 CU CU A 501 1555 1555 2.60 LINK NE2 HIS A 306 CU CU A 502 1555 12554 2.08 CISPEP 1 PRO A 22 PRO A 23 0 7.82 CISPEP 2 VAL A 68 PRO A 69 0 -2.92 SITE 1 AC1 4 HIS A 95 CYS A 136 HIS A 145 MET A 150 SITE 1 AC2 3 HIS A 100 HIS A 135 HIS A 306 CRYST1 97.989 97.989 97.989 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010205 0.00000