HEADER OXIDOREDUCTASE 23-APR-18 6GD8 TITLE CYTOCHROME C IN COMPLEX WITH SULFONATO-CALIX[8]ARENE, P31 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 GENE: CYC1, YJR048W, J1653; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CALIXARENE, SCAFFOLD, SUPRAMOLECULAR, ASSEMBLY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.RENNIE,G.C.FOX,P.B.CROWLEY REVDAT 3 17-JAN-24 6GD8 1 REMARK REVDAT 2 17-OCT-18 6GD8 1 JRNL REVDAT 1 29-AUG-18 6GD8 0 JRNL AUTH M.L.RENNIE,G.C.FOX,J.PEREZ,P.B.CROWLEY JRNL TITL AUTO-REGULATED PROTEIN ASSEMBLY ON A SUPRAMOLECULAR JRNL TITL 2 SCAFFOLD. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 13764 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 30109907 JRNL DOI 10.1002/ANIE.201807490 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 497 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.98000 REMARK 3 B22 (A**2) : 13.98000 REMARK 3 B33 (A**2) : -27.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.403 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6GD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 71.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LYC CHAIN A REMARK 200 REMARK 200 REMARK: SMALL PINK-RED RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24 % PEG 3350 0.27 M NACL 0.09 M MES REMARK 280 PH 5.5 (2X PROTEIN SOLUTION : 1X CRYSTALLISATION CONDITION), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.62700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.25400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 14 CBB HEC D 201 2.02 REMARK 500 SG CYS B 14 CBB HEC B 201 2.06 REMARK 500 SG CYS B 17 CBC HEC B 201 2.06 REMARK 500 SG CYS A 14 CBB HEC A 201 2.07 REMARK 500 SG CYS C 17 CBC HEC C 201 2.08 REMARK 500 SG CYS A 17 CBC HEC A 201 2.09 REMARK 500 SG CYS D 17 CBC HEC D 201 2.11 REMARK 500 O SER B 2 O LYS B 5 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 5 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -127.25 -104.09 REMARK 500 ASN A 70 92.63 -169.59 REMARK 500 LYS B 27 -126.92 -104.03 REMARK 500 ASN B 70 92.97 -169.50 REMARK 500 LYS C 27 -126.98 -104.11 REMARK 500 ASN C 70 92.51 -169.48 REMARK 500 LYS D 27 -126.94 -104.16 REMARK 500 ASN D 70 92.58 -169.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EVB C 202 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 92.0 REMARK 620 3 HEC A 201 NB 89.0 90.4 REMARK 620 4 HEC A 201 NC 87.5 178.9 88.6 REMARK 620 5 HEC A 201 ND 91.1 90.2 179.4 90.8 REMARK 620 6 MET A 80 SD 174.2 82.6 93.0 97.9 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 87.6 REMARK 620 3 HEC B 201 NB 92.8 89.7 REMARK 620 4 HEC B 201 NC 92.2 178.7 89.1 REMARK 620 5 HEC B 201 ND 87.3 90.8 179.5 90.5 REMARK 620 6 MET B 80 SD 167.5 84.1 96.5 96.3 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 18 NE2 REMARK 620 2 HEC C 201 NA 90.1 REMARK 620 3 HEC C 201 NB 88.2 89.4 REMARK 620 4 HEC C 201 NC 90.9 178.1 89.0 REMARK 620 5 HEC C 201 ND 93.0 91.1 178.7 90.5 REMARK 620 6 MET C 80 SD 174.2 84.9 94.5 94.2 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 18 NE2 REMARK 620 2 HEC D 201 NA 88.2 REMARK 620 3 HEC D 201 NB 89.9 89.3 REMARK 620 4 HEC D 201 NC 91.7 178.8 89.5 REMARK 620 5 HEC D 201 ND 90.6 91.2 179.2 89.9 REMARK 620 6 MET D 80 SD 169.6 82.8 95.0 97.5 84.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC B 201 and CYS B REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC C 201 and CYS C REMARK 800 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC C 201 and CYS C REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC C 201 and CYS C REMARK 800 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC D 201 and CYS D REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEC D 201 and CYS D REMARK 800 14 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GD6 RELATED DB: PDB REMARK 900 SAME PROTEIN-LIGAND COMPLEX IN A DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: 6GD7 RELATED DB: PDB REMARK 900 SAME PROTEIN-LIGAND COMPLEX IN A DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: 6GD9 RELATED DB: PDB REMARK 900 SAME PROTEIN-LIGAND COMPLEX IN A DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: 6GDA RELATED DB: PDB REMARK 900 SAME PROTEIN-LIGAND COMPLEX IN A DIFFERENT CRYSTAL FORM DBREF 6GD8 A -4 103 UNP P00044 CYC1_YEAST 3 109 DBREF 6GD8 B -4 103 UNP P00044 CYC1_YEAST 3 109 DBREF 6GD8 C -4 103 UNP P00044 CYC1_YEAST 3 109 DBREF 6GD8 D -4 103 UNP P00044 CYC1_YEAST 3 109 SEQADV 6GD8 ALA A -5 UNP P00044 EXPRESSION TAG SEQADV 6GD8 THR A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQADV 6GD8 ALA B -5 UNP P00044 EXPRESSION TAG SEQADV 6GD8 THR B 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQADV 6GD8 ALA C -5 UNP P00044 EXPRESSION TAG SEQADV 6GD8 THR C 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQADV 6GD8 ALA D -5 UNP P00044 EXPRESSION TAG SEQADV 6GD8 THR D 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU SEQRES 1 B 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 B 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 B 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 B 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 B 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 B 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 B 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 B 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 B 108 LYS ALA THR GLU SEQRES 1 C 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 C 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 C 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 C 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 C 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 C 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 C 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 C 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 C 108 LYS ALA THR GLU SEQRES 1 D 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 D 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 D 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 D 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 D 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 D 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 D 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 D 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 D 108 LYS ALA THR GLU HET HEC A 201 43 HET EVB A 202 96 HET EVB A 203 96 HET HEC B 201 43 HET EVB B 202 96 HET HEC C 201 43 HET EVB C 202 37 HET HEC D 201 43 HETNAM HEC HEME C HETNAM EVB SULFONATO-CALIX[8]ARENE FORMUL 5 HEC 4(C34 H34 FE N4 O4) FORMUL 6 EVB 4(C56 H48 O32 S8) FORMUL 13 HOH *41(H2 O) HELIX 1 AA1 SER A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 ASN A 56 1 8 HELIX 3 AA3 ASP A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 GLU A 103 1 17 HELIX 6 AA6 ALA B 3 CYS B 14 1 12 HELIX 7 AA7 THR B 49 ASN B 56 1 8 HELIX 8 AA8 ASP B 60 ASN B 70 1 11 HELIX 9 AA9 ASN B 70 ILE B 75 1 6 HELIX 10 AB1 LYS B 87 GLU B 103 1 17 HELIX 11 AB2 SER C 2 CYS C 14 1 13 HELIX 12 AB3 THR C 49 ASN C 56 1 8 HELIX 13 AB4 ASP C 60 ASN C 70 1 11 HELIX 14 AB5 ASN C 70 ILE C 75 1 6 HELIX 15 AB6 LYS C 87 GLU C 103 1 17 HELIX 16 AB7 SER D 2 CYS D 14 1 13 HELIX 17 AB8 THR D 49 ASN D 56 1 8 HELIX 18 AB9 ASP D 60 ASN D 70 1 11 HELIX 19 AC1 ASN D 70 ILE D 75 1 6 HELIX 20 AC2 LYS D 87 GLU D 103 1 17 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.72 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.74 LINK SG CYS B 14 CAB HEC B 201 1555 1555 1.71 LINK SG CYS B 17 CAC HEC B 201 1555 1555 1.73 LINK SG CYS C 14 CAB HEC C 201 1555 1555 1.71 LINK SG CYS C 14 CBB HEC C 201 1555 1555 2.00 LINK SG CYS C 17 CAC HEC C 201 1555 1555 1.74 LINK SG CYS D 14 CAB HEC D 201 1555 1555 1.71 LINK SG CYS D 17 CAC HEC D 201 1555 1555 1.74 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.17 LINK SD MET A 80 FE HEC A 201 1555 1555 2.54 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 2.12 LINK SD MET B 80 FE HEC B 201 1555 1555 2.57 LINK NE2 HIS C 18 FE HEC C 201 1555 1555 2.12 LINK SD MET C 80 FE HEC C 201 1555 1555 2.60 LINK NE2 HIS D 18 FE HEC D 201 1555 1555 2.10 LINK SD MET D 80 FE HEC D 201 1555 1555 2.59 SITE 1 AC1 20 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 20 VAL A 28 GLY A 29 SER A 40 GLY A 41 SITE 3 AC1 20 TYR A 46 TYR A 48 THR A 49 ASN A 52 SITE 4 AC1 20 TRP A 59 TYR A 67 LEU A 68 THR A 78 SITE 5 AC1 20 LYS A 79 MET A 80 LEU A 94 HOH A 303 SITE 1 AC2 13 LYS A 4 THR A 8 LYS A 11 THR A 12 SITE 2 AC2 13 ARG A 13 LEU A 15 HOH A 307 HOH A 310 SITE 3 AC2 13 LYS C 4 LYS C 5 THR C 8 LYS C 11 SITE 4 AC2 13 THR C 12 SITE 1 AC3 16 THR A 69 ASN A 70 LYS A 72 LYS A 73 SITE 2 AC3 16 GLY A 83 GLY A 84 LYS A 86 LYS A 87 SITE 3 AC3 16 HOH A 311 THR B 69 ASN B 70 LYS B 72 SITE 4 AC3 16 LYS B 73 GLY B 83 GLY B 84 LYS B 86 SITE 1 AC4 14 LYS B 4 LYS B 5 THR B 8 LYS B 11 SITE 2 AC4 14 THR B 12 ARG B 13 LYS B 89 HOH B 304 SITE 3 AC4 14 HOH B 308 LYS D 4 LYS D 5 THR D 8 SITE 4 AC4 14 LYS D 11 THR D 12 SITE 1 AC5 6 HIS B 26 ARG C 13 PHE C 82 GLY C 83 SITE 2 AC5 6 GLY C 84 LYS C 86 SITE 1 AC6 22 PHE B 10 ARG B 13 LEU B 15 GLN B 16 SITE 2 AC6 22 CYS B 17 HIS B 18 VAL B 28 GLY B 29 SITE 3 AC6 22 PRO B 30 ILE B 35 SER B 40 GLY B 41 SITE 4 AC6 22 TYR B 46 TYR B 48 THR B 49 ASN B 52 SITE 5 AC6 22 TRP B 59 LEU B 68 THR B 78 LYS B 79 SITE 6 AC6 22 MET B 80 LEU B 94 SITE 1 AC7 22 ARG B 13 CYS B 14 LEU B 15 GLN B 16 SITE 2 AC7 22 HIS B 18 LYS B 27 VAL B 28 GLY B 29 SITE 3 AC7 22 PRO B 30 ILE B 35 SER B 40 GLY B 41 SITE 4 AC7 22 TYR B 46 TYR B 48 THR B 49 ASN B 52 SITE 5 AC7 22 TRP B 59 LEU B 68 THR B 78 LYS B 79 SITE 6 AC7 22 MET B 80 LEU B 94 SITE 1 AC8 21 PHE C 10 ARG C 13 LEU C 15 GLN C 16 SITE 2 AC8 21 CYS C 17 HIS C 18 VAL C 28 GLY C 29 SITE 3 AC8 21 SER C 40 GLY C 41 TYR C 46 TYR C 48 SITE 4 AC8 21 THR C 49 ASN C 52 TRP C 59 LEU C 68 SITE 5 AC8 21 THR C 78 LYS C 79 MET C 80 LEU C 94 SITE 6 AC8 21 HOH C 303 SITE 1 AC9 21 ARG C 13 CYS C 14 LEU C 15 GLN C 16 SITE 2 AC9 21 HIS C 18 LYS C 27 VAL C 28 GLY C 29 SITE 3 AC9 21 SER C 40 GLY C 41 TYR C 46 TYR C 48 SITE 4 AC9 21 THR C 49 ASN C 52 TRP C 59 LEU C 68 SITE 5 AC9 21 THR C 78 LYS C 79 MET C 80 LEU C 94 SITE 6 AC9 21 HOH C 303 SITE 1 AD1 21 PHE C 10 ARG C 13 LEU C 15 GLN C 16 SITE 2 AD1 21 CYS C 17 HIS C 18 VAL C 28 GLY C 29 SITE 3 AD1 21 SER C 40 GLY C 41 TYR C 46 TYR C 48 SITE 4 AD1 21 THR C 49 ASN C 52 TRP C 59 LEU C 68 SITE 5 AD1 21 THR C 78 LYS C 79 MET C 80 LEU C 94 SITE 6 AD1 21 HOH C 303 SITE 1 AD2 23 ARG D 13 CYS D 14 LEU D 15 GLN D 16 SITE 2 AD2 23 HIS D 18 LYS D 27 VAL D 28 GLY D 29 SITE 3 AD2 23 PRO D 30 ILE D 35 SER D 40 GLY D 41 SITE 4 AD2 23 TYR D 46 TYR D 48 THR D 49 ASN D 52 SITE 5 AD2 23 TRP D 59 LEU D 68 THR D 78 LYS D 79 SITE 6 AD2 23 MET D 80 LEU D 94 HOH D 302 SITE 1 AD3 23 PHE D 10 ARG D 13 LEU D 15 GLN D 16 SITE 2 AD3 23 CYS D 17 HIS D 18 VAL D 28 GLY D 29 SITE 3 AD3 23 PRO D 30 ILE D 35 SER D 40 GLY D 41 SITE 4 AD3 23 TYR D 46 TYR D 48 THR D 49 ASN D 52 SITE 5 AD3 23 TRP D 59 LEU D 68 THR D 78 LYS D 79 SITE 6 AD3 23 MET D 80 LEU D 94 HOH D 302 CRYST1 66.680 66.680 142.881 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014997 0.008659 0.000000 0.00000 SCALE2 0.000000 0.017317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006999 0.00000