data_6GDH # _entry.id 6GDH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GDH pdb_00006gdh 10.2210/pdb6gdh/pdb WWPDB D_1200009784 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-07 2 'Structure model' 1 1 2018-11-21 3 'Structure model' 1 2 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_database_proc 4 2 'Structure model' pdbx_seq_map_depositor_info 5 3 'Structure model' chem_comp_atom 6 3 'Structure model' chem_comp_bond 7 3 'Structure model' database_2 8 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 2 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GDH _pdbx_database_status.recvd_initial_deposition_date 2018-04-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Parkinson, G.N.' 1 0000-0002-1865-9685 'Haider, S.' 2 ? 'Li, P.' 3 ? 'Khiali, S.' 4 ? 'Munnur, D.' 5 ? 'Ramanathan, A.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 140 _citation.language ? _citation.page_first 15366 _citation.page_last 15374 _citation.title 'Holliday Junctions Formed from Human Telomeric DNA.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.8b08699 _citation.pdbx_database_id_PubMed 30376323 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Haider, S.' 1 ? primary 'Li, P.' 2 ? primary 'Khiali, S.' 3 ? primary 'Munnur, D.' 4 ? primary 'Ramanathan, A.' 5 ? primary 'Parkinson, G.N.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*AP*AP*CP*CP*CP*TP*AP*A)-3') ; 2972.982 4 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3') ; 3115.050 4 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DA)(DC)(DC)(DC)(DT)(DA)(DA)' CTAACCCTAA A,C,E,G ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)' TTAGGGTTAG B,D,F,H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DA n 1 4 DA n 1 5 DC n 1 6 DC n 1 7 DC n 1 8 DT n 1 9 DA n 1 10 DA n 2 1 DT n 2 2 DT n 2 3 DA n 2 4 DG n 2 5 DG n 2 6 DG n 2 7 DT n 2 8 DT n 2 9 DA n 2 10 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 10 'Homo sapiens' human 9606 ? 2 1 sample 1 10 'Homo sapiens' human 9606 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DA 10 10 10 DA DA A . n B 2 1 DT 1 1 1 DT DT B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DG 10 10 10 DG DG B . n C 1 1 DC 1 1 1 DC DC C . n C 1 2 DT 2 2 2 DT DT C . n C 1 3 DA 3 3 3 DA DA C . n C 1 4 DA 4 4 4 DA DA C . n C 1 5 DC 5 5 5 DC DC C . n C 1 6 DC 6 6 6 DC DC C . n C 1 7 DC 7 7 7 DC DC C . n C 1 8 DT 8 8 8 DT DT C . n C 1 9 DA 9 9 9 DA DA C . n C 1 10 DA 10 10 10 DA DA C . n D 2 1 DT 1 1 1 DT DT D . n D 2 2 DT 2 2 2 DT DT D . n D 2 3 DA 3 3 3 DA DA D . n D 2 4 DG 4 4 4 DG DG D . n D 2 5 DG 5 5 5 DG DG D . n D 2 6 DG 6 6 6 DG DG D . n D 2 7 DT 7 7 7 DT DT D . n D 2 8 DT 8 8 8 DT DT D . n D 2 9 DA 9 9 9 DA DA D . n D 2 10 DG 10 10 10 DG DG D . n E 1 1 DC 1 1 1 DC DC E . n E 1 2 DT 2 2 2 DT DT E . n E 1 3 DA 3 3 3 DA DA E . n E 1 4 DA 4 4 4 DA DA E . n E 1 5 DC 5 5 5 DC DC E . n E 1 6 DC 6 6 6 DC DC E . n E 1 7 DC 7 7 7 DC DC E . n E 1 8 DT 8 8 8 DT DT E . n E 1 9 DA 9 9 9 DA DA E . n E 1 10 DA 10 10 10 DA DA E . n F 2 1 DT 1 1 1 DT DT F . n F 2 2 DT 2 2 2 DT DT F . n F 2 3 DA 3 3 3 DA DA F . n F 2 4 DG 4 4 4 DG DG F . n F 2 5 DG 5 5 5 DG DG F . n F 2 6 DG 6 6 6 DG DG F . n F 2 7 DT 7 7 7 DT DT F . n F 2 8 DT 8 8 8 DT DT F . n F 2 9 DA 9 9 9 DA DA F . n F 2 10 DG 10 10 10 DG DG F . n G 1 1 DC 1 1 1 DC DC G . n G 1 2 DT 2 2 2 DT DT G . n G 1 3 DA 3 3 3 DA DA G . n G 1 4 DA 4 4 4 DA DA G . n G 1 5 DC 5 5 5 DC DC G . n G 1 6 DC 6 6 6 DC DC G . n G 1 7 DC 7 7 7 DC DC G . n G 1 8 DT 8 8 8 DT DT G . n G 1 9 DA 9 9 9 DA DA G . n G 1 10 DA 10 10 10 DA DA G . n H 2 1 DT 1 1 1 DT DT H . n H 2 2 DT 2 2 2 DT DT H . n H 2 3 DA 3 3 3 DA DA H . n H 2 4 DG 4 4 4 DG DG H . n H 2 5 DG 5 5 5 DG DG H . n H 2 6 DG 6 6 6 DG DG H . n H 2 7 DT 7 7 7 DT DT H . n H 2 8 DT 8 8 8 DT DT H . n H 2 9 DA 9 9 9 DA DA H . n H 2 10 DG 10 10 10 DG DG H . n # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? refmac_5.8.0222 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.6.3 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? 1.171.36.32 5 # _cell.angle_alpha 99.870 _cell.angle_alpha_esd ? _cell.angle_beta 90.070 _cell.angle_beta_esd ? _cell.angle_gamma 110.940 _cell.angle_gamma_esd ? _cell.entry_id 6GDH _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.733 _cell.length_a_esd ? _cell.length_b 33.161 _cell.length_b_esd ? _cell.length_c 83.467 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GDH _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.33 _exptl_crystal.description 'Flat plate, hexagonal' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details fixed _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25 mM potassium chloride, 10 mM potassium cacodylate 50mM for magnesium chloride, 20mM for calcium chloride, MPD 32% to 38%' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 105 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details mirrors _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'AGILENT TITAN CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-11-12 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator mirrors _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'SEALED TUBE' _diffrn_source.target ? _diffrn_source.type 'Agilent SuperNova' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6GDH _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.800 _reflns.d_resolution_low 22.510 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5625 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.600 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 76 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.070 _reflns.pdbx_Rpim_I_all 0.037 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 19984 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.800 2.950 ? ? ? ? ? ? 813 93.600 ? ? ? ? 0.447 ? ? ? ? ? ? ? ? 2.600 ? ? ? ? 0.555 0.324 ? 1 1 0.915 ? 8.860 22.510 ? ? ? ? ? ? 169 88.900 ? ? ? ? 0.026 ? ? ? ? ? ? ? ? 3.900 ? ? ? ? 0.031 0.016 ? 2 1 0.999 ? # _refine.aniso_B[1][1] -0.0400 _refine.aniso_B[1][2] -4.4600 _refine.aniso_B[1][3] 0.8300 _refine.aniso_B[2][2] -8.2500 _refine.aniso_B[2][3] 3.2100 _refine.aniso_B[3][3] 11.5200 _refine.B_iso_max 88.140 _refine.B_iso_mean 42.6120 _refine.B_iso_min 10.590 _refine.correlation_coeff_Fo_to_Fc 0.9670 _refine.correlation_coeff_Fo_to_Fc_free 0.9300 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6GDH _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.8500 _refine.ls_d_res_low 22.5100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type sparse _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5155 _refine.ls_number_reflns_R_free 223 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.2800 _refine.ls_percent_reflns_R_free 4.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2298 _refine.ls_R_factor_R_free 0.2729 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2280 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3HS1 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.0000 _refine.pdbx_overall_ESU_R_Free 0.4440 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 21.3390 _refine.overall_SU_ML 0.3920 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.8500 _refine_hist.d_res_low 22.5100 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1616 _refine_hist.pdbx_number_residues_total 80 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1616 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.011 1808 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 912 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.552 1.171 2776 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.835 3.000 2160 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.117 0.200 240 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 0.020 952 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 384 ? r_gen_planes_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.850 2.924 418 . 18 382 95.694 . . . 0.507 . 0.453 . . . . . 0.440 20 . . . 'X-RAY DIFFRACTION' 2.924 3.004 414 . 12 391 97.343 . . . 0.351 . 0.432 . . . . . 0.415 20 . . . 'X-RAY DIFFRACTION' 3.004 3.091 349 . 17 329 99.140 . . . 0.609 . 0.347 . . . . . 0.339 20 . . . 'X-RAY DIFFRACTION' 3.091 3.186 367 . 11 347 97.548 . . . 0.542 . 0.279 . . . . . 0.298 20 . . . 'X-RAY DIFFRACTION' 3.186 3.290 384 . 14 367 99.219 . . . 0.193 . 0.168 . . . . . 0.210 20 . . . 'X-RAY DIFFRACTION' 3.290 3.406 343 . 11 330 99.417 . . . 0.318 . 0.214 . . . . . 0.250 20 . . . 'X-RAY DIFFRACTION' 3.406 3.534 327 . 12 310 98.471 . . . 0.403 . 0.293 . . . . . 0.283 20 . . . 'X-RAY DIFFRACTION' 3.534 3.678 344 . 18 324 99.419 . . . 0.397 . 0.278 . . . . . 0.278 20 . . . 'X-RAY DIFFRACTION' 3.678 3.841 292 . 16 272 98.630 . . . 0.324 . 0.262 . . . . . 0.266 20 . . . 'X-RAY DIFFRACTION' 3.841 4.028 300 . 5 292 99.000 . . . 0.140 . 0.241 . . . . . 0.254 20 . . . 'X-RAY DIFFRACTION' 4.028 4.245 277 . 16 260 99.639 . . . 0.212 . 0.214 . . . . . 0.220 20 . . . 'X-RAY DIFFRACTION' 4.245 4.502 257 . 5 248 98.444 . . . 0.237 . 0.193 . . . . . 0.189 20 . . . 'X-RAY DIFFRACTION' 4.502 4.812 281 . 13 267 99.644 . . . 0.154 . 0.217 . . . . . 0.207 20 . . . 'X-RAY DIFFRACTION' 4.812 5.196 215 . 17 196 99.070 . . . 0.340 . 0.209 . . . . . 0.204 20 . . . 'X-RAY DIFFRACTION' 5.196 5.690 219 . 13 205 99.543 . . . 0.229 . 0.200 . . . . . 0.200 20 . . . 'X-RAY DIFFRACTION' 5.690 6.357 187 . 8 177 98.930 . . . 0.194 . 0.161 . . . . . 0.168 20 . . . 'X-RAY DIFFRACTION' 6.357 7.334 169 . 4 164 99.408 . . . 0.171 . 0.163 . . . . . 0.187 20 . . . 'X-RAY DIFFRACTION' 7.334 8.964 148 . 4 142 98.649 . . . 0.208 . 0.130 . . . . . 0.178 20 . . . 'X-RAY DIFFRACTION' 8.964 12.602 117 . 8 104 95.726 . . . 0.113 . 0.137 . . . . . 0.192 20 . . . 'X-RAY DIFFRACTION' 12.602 82.041 63 . 1 47 76.190 . . . 0.439 . 0.173 . . . . . 0.247 20 . . . # _struct.entry_id 6GDH _struct.title 'Holliday Junctions formed from Telomeric DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GDH _struct_keywords.text 'Holliday junction, Homologous recombination, Telomeres, ALT mechanism, ACC structural motif., RECOMBINATION' _struct_keywords.pdbx_keywords RECOMBINATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6GDH 6GDH ? 1 ? 1 2 PDB 6GDH 6GDH ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6GDH A 1 ? 10 ? 6GDH 1 ? 10 ? 1 10 2 2 6GDH B 1 ? 10 ? 6GDH 1 ? 10 ? 1 10 3 1 6GDH C 1 ? 10 ? 6GDH 1 ? 10 ? 1 10 4 2 6GDH D 1 ? 10 ? 6GDH 1 ? 10 ? 1 10 5 1 6GDH E 1 ? 10 ? 6GDH 1 ? 10 ? 1 10 6 2 6GDH F 1 ? 10 ? 6GDH 1 ? 10 ? 1 10 7 1 6GDH G 1 ? 10 ? 6GDH 1 ? 10 ? 1 10 8 2 6GDH H 1 ? 10 ? 6GDH 1 ? 10 ? 1 10 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1 E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details 'Gel electrophoresis confirm HJ formation' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 2 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 2 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 4 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 4 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 D DG 6 N1 ? ? A DC 5 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 D DG 6 O6 ? ? A DC 5 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 D DG 6 N2 ? ? A DC 5 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 D DG 5 N1 ? ? A DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 D DG 5 O6 ? ? A DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 D DG 5 N2 ? ? A DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? A DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? A DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? A DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 D DA 3 N1 ? ? A DT 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 D DA 3 N6 ? ? A DT 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N1 ? ? ? 1_555 D DT 2 N3 ? ? A DA 9 D DT 2 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog22 hydrog ? ? A DA 10 N1 ? ? ? 1_555 D DT 1 N3 ? ? A DA 10 D DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N6 ? ? ? 1_555 D DT 1 O4 ? ? A DA 10 D DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 1 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 1 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 1 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 2 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 2 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 3 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 3 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 4 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 4 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 4 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 5 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 5 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 5 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 6 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 6 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 6 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 10 N1 ? ? C DC 1 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 10 O6 ? ? C DC 1 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 10 N2 ? ? C DC 1 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 9 N1 ? ? C DT 2 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 9 N6 ? ? C DT 2 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 4 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 4 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DC 1 N3 ? ? ? 1_555 F DG 10 N1 ? ? E DC 1 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DC 1 N4 ? ? ? 1_555 F DG 10 O6 ? ? E DC 1 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DC 1 O2 ? ? ? 1_555 F DG 10 N2 ? ? E DC 1 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DT 2 N3 ? ? ? 1_555 F DA 9 N1 ? ? E DT 2 F DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DT 2 O4 ? ? ? 1_555 F DA 9 N6 ? ? E DT 2 F DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DA 3 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 3 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DA 3 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 3 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DA 4 N1 ? ? ? 1_555 F DT 7 N3 ? ? E DA 4 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DA 4 N6 ? ? ? 1_555 F DT 7 O4 ? ? E DA 4 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DC 5 N3 ? ? ? 1_555 H DG 6 N1 ? ? E DC 5 H DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DC 5 N4 ? ? ? 1_555 H DG 6 O6 ? ? E DC 5 H DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DC 5 O2 ? ? ? 1_555 H DG 6 N2 ? ? E DC 5 H DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DC 6 N3 ? ? ? 1_555 H DG 5 N1 ? ? E DC 6 H DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DC 6 N4 ? ? ? 1_555 H DG 5 O6 ? ? E DC 6 H DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DC 6 O2 ? ? ? 1_555 H DG 5 N2 ? ? E DC 6 H DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DC 7 N3 ? ? ? 1_555 H DG 4 N1 ? ? E DC 7 H DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DC 7 N4 ? ? ? 1_555 H DG 4 O6 ? ? E DC 7 H DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DC 7 O2 ? ? ? 1_555 H DG 4 N2 ? ? E DC 7 H DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E DT 8 N3 ? ? ? 1_555 H DA 3 N1 ? ? E DT 8 H DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E DT 8 O4 ? ? ? 1_555 H DA 3 N6 ? ? E DT 8 H DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E DA 9 N1 ? ? ? 1_555 H DT 2 N3 ? ? E DA 9 H DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E DA 9 N6 ? ? ? 1_555 H DT 2 O4 ? ? E DA 9 H DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DA 10 N1 ? ? ? 1_555 H DT 1 N3 ? ? E DA 10 H DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DA 10 N6 ? ? ? 1_555 H DT 1 O4 ? ? E DA 10 H DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? F DT 1 N3 ? ? ? 1_555 G DA 10 N1 ? ? F DT 1 G DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? F DT 1 O4 ? ? ? 1_555 G DA 10 N6 ? ? F DT 1 G DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? F DT 2 N3 ? ? ? 1_555 G DA 9 N1 ? ? F DT 2 G DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? F DT 2 O4 ? ? ? 1_555 G DA 9 N6 ? ? F DT 2 G DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? F DA 3 N1 ? ? ? 1_555 G DT 8 N3 ? ? F DA 3 G DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? F DA 3 N6 ? ? ? 1_555 G DT 8 O4 ? ? F DA 3 G DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? F DG 4 N1 ? ? ? 1_555 G DC 7 N3 ? ? F DG 4 G DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? F DG 4 N2 ? ? ? 1_555 G DC 7 O2 ? ? F DG 4 G DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? F DG 4 O6 ? ? ? 1_555 G DC 7 N4 ? ? F DG 4 G DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? F DG 5 N1 ? ? ? 1_555 G DC 6 N3 ? ? F DG 5 G DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? F DG 5 N2 ? ? ? 1_555 G DC 6 O2 ? ? F DG 5 G DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? F DG 5 O6 ? ? ? 1_555 G DC 6 N4 ? ? F DG 5 G DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? F DG 6 N1 ? ? ? 1_555 G DC 5 N3 ? ? F DG 6 G DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? F DG 6 N2 ? ? ? 1_555 G DC 5 O2 ? ? F DG 6 G DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? F DG 6 O6 ? ? ? 1_555 G DC 5 N4 ? ? F DG 6 G DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? G DC 1 N3 ? ? ? 1_555 H DG 10 N1 ? ? G DC 1 H DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? G DC 1 N4 ? ? ? 1_555 H DG 10 O6 ? ? G DC 1 H DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? G DC 1 O2 ? ? ? 1_555 H DG 10 N2 ? ? G DC 1 H DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? G DT 2 N3 ? ? ? 1_555 H DA 9 N1 ? ? G DT 2 H DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? G DT 2 O4 ? ? ? 1_555 H DA 9 N6 ? ? G DT 2 H DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? G DA 3 N1 ? ? ? 1_555 H DT 8 N3 ? ? G DA 3 H DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? G DA 3 N6 ? ? ? 1_555 H DT 8 O4 ? ? G DA 3 H DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? G DA 4 N1 ? ? ? 1_555 H DT 7 N3 ? ? G DA 4 H DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? G DA 4 N6 ? ? ? 1_555 H DT 7 O4 ? ? G DA 4 H DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 97.52 102.40 -4.88 0.80 N 2 1 "O5'" A DT 2 ? ? P A DT 2 ? ? OP1 A DT 2 ? ? 99.63 105.70 -6.07 0.90 N 3 1 "O4'" C DT 8 ? ? "C1'" C DT 8 ? ? N1 C DT 8 ? ? 110.14 108.30 1.84 0.30 N # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6GDH 'double helix' 6GDH 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.763 -0.457 -0.164 6.649 -7.260 -1.899 1 A_DC1:DG10_B A 1 ? B 10 ? 19 1 1 A DT 2 1_555 B DA 9 1_555 -0.300 -0.137 0.027 5.037 -7.741 -3.796 2 A_DT2:DA9_B A 2 ? B 9 ? 20 1 1 A DA 3 1_555 B DT 8 1_555 -0.170 -0.241 -0.440 -12.033 -9.253 0.604 3 A_DA3:DT8_B A 3 ? B 8 ? 20 1 1 A DA 4 1_555 B DT 7 1_555 -0.036 -0.187 0.183 5.188 -7.804 -3.686 4 A_DA4:DT7_B A 4 ? B 7 ? 20 1 1 C DC 5 1_555 B DG 6 1_555 -0.162 -0.207 0.278 2.539 -7.319 -0.675 5 C_DC5:DG6_B C 5 ? B 6 ? 19 1 1 C DC 6 1_555 B DG 5 1_555 0.489 -0.423 0.360 -7.141 -4.918 -7.029 6 C_DC6:DG5_B C 6 ? B 5 ? 19 1 1 C DC 7 1_555 B DG 4 1_555 -0.198 -0.211 0.343 -10.528 4.858 -0.749 7 C_DC7:DG4_B C 7 ? B 4 ? 19 1 1 C DT 8 1_555 B DA 3 1_555 -0.522 -0.130 0.058 2.833 -1.445 -6.350 8 C_DT8:DA3_B C 8 ? B 3 ? 20 1 1 C DA 9 1_555 B DT 2 1_555 -0.274 -0.176 -0.006 4.577 -5.883 2.441 9 C_DA9:DT2_B C 9 ? B 2 ? 20 1 1 C DA 10 1_555 B DT 1 1_555 0.143 -0.308 0.489 7.496 -8.417 4.224 10 C_DA10:DT1_B C 10 ? B 1 ? 20 1 1 C DC 1 1_555 D DG 10 1_555 -0.398 0.011 0.050 6.906 -35.589 10.596 11 C_DC1:DG10_D C 1 ? D 10 ? 19 1 1 C DT 2 1_555 D DA 9 1_555 -0.227 -0.140 -0.193 5.146 -14.533 -4.557 12 C_DT2:DA9_D C 2 ? D 9 ? 20 1 1 C DA 3 1_555 D DT 8 1_555 -0.275 -0.234 -0.887 -17.113 -19.187 -0.768 13 C_DA3:DT8_D C 3 ? D 8 ? 20 1 1 C DA 4 1_555 D DT 7 1_555 -0.201 0.284 -0.384 3.435 -21.095 -5.979 14 C_DA4:DT7_D C 4 ? D 7 ? 20 1 1 A DC 5 1_555 D DG 6 1_555 0.067 -0.220 -0.138 9.064 -24.167 3.428 15 A_DC5:DG6_D A 5 ? D 6 ? 19 1 1 A DC 6 1_555 D DG 5 1_555 0.780 -0.422 0.093 -4.261 -21.293 -4.350 16 A_DC6:DG5_D A 6 ? D 5 ? 19 1 1 A DC 7 1_555 D DG 4 1_555 0.272 -0.224 0.444 -11.805 -7.600 -1.421 17 A_DC7:DG4_D A 7 ? D 4 ? 19 1 1 A DT 8 1_555 D DA 3 1_555 0.484 -0.082 0.183 1.036 -12.262 -1.618 18 A_DT8:DA3_D A 8 ? D 3 ? 20 1 1 A DA 9 1_555 D DT 2 1_555 -0.764 0.378 0.378 17.925 -25.945 18.229 19 A_DA9:DT2_D A 9 ? D 2 ? ? 1 1 A DA 10 1_555 D DT 1 1_555 1.176 -0.058 0.358 13.974 -18.111 2.930 20 A_DA10:DT1_D A 10 ? D 1 ? 20 1 1 E DC 1 1_555 F DG 10 1_555 -0.504 -0.112 -0.723 14.098 -21.041 4.914 21 E_DC1:DG10_F E 1 ? F 10 ? 19 1 1 E DT 2 1_555 F DA 9 1_555 -0.759 -0.073 -0.557 6.290 -27.252 -8.224 22 E_DT2:DA9_F E 2 ? F 9 ? 20 1 1 E DA 3 1_555 F DT 8 1_555 -0.305 -0.042 -0.705 -15.871 -14.581 2.894 23 E_DA3:DT8_F E 3 ? F 8 ? 20 1 1 E DA 4 1_555 F DT 7 1_555 0.308 0.010 -0.157 8.492 -7.983 -0.284 24 E_DA4:DT7_F E 4 ? F 7 ? 20 1 1 G DC 5 1_555 F DG 6 1_555 0.418 -0.204 -0.097 16.379 -36.446 -2.096 25 G_DC5:DG6_F G 5 ? F 6 ? 19 1 1 G DC 6 1_555 F DG 5 1_555 0.344 -0.326 0.650 -4.324 -24.358 -9.417 26 G_DC6:DG5_F G 6 ? F 5 ? 19 1 1 G DC 7 1_555 F DG 4 1_555 -0.489 -0.216 0.725 -7.985 -11.463 -2.236 27 G_DC7:DG4_F G 7 ? F 4 ? 19 1 1 G DT 8 1_555 F DA 3 1_555 -0.055 -0.130 0.163 0.290 -9.681 -6.676 28 G_DT8:DA3_F G 8 ? F 3 ? 20 1 1 G DA 9 1_555 F DT 2 1_555 -0.185 0.194 0.112 9.758 -8.783 8.590 29 G_DA9:DT2_F G 9 ? F 2 ? 20 1 1 G DA 10 1_555 F DT 1 1_555 0.800 0.014 0.818 16.607 -17.909 -3.407 30 G_DA10:DT1_F G 10 ? F 1 ? 20 1 1 G DC 1 1_555 H DG 10 1_555 0.680 -0.292 0.171 3.335 -16.339 3.394 31 G_DC1:DG10_H G 1 ? H 10 ? 19 1 1 G DT 2 1_555 H DA 9 1_555 0.148 -0.244 -0.130 7.154 -4.743 0.978 32 G_DT2:DA9_H G 2 ? H 9 ? 20 1 1 G DA 3 1_555 H DT 8 1_555 -0.259 -0.343 -0.572 -13.562 -10.566 2.983 33 G_DA3:DT8_H G 3 ? H 8 ? 20 1 1 G DA 4 1_555 H DT 7 1_555 -0.091 -0.184 0.163 4.051 -8.445 -5.645 34 G_DA4:DT7_H G 4 ? H 7 ? 20 1 1 E DC 5 1_555 H DG 6 1_555 0.059 -0.056 0.176 2.786 -11.290 0.175 35 E_DC5:DG6_H E 5 ? H 6 ? 19 1 1 E DC 6 1_555 H DG 5 1_555 0.589 -0.462 0.497 -10.857 -4.533 -6.633 36 E_DC6:DG5_H E 6 ? H 5 ? 19 1 1 E DC 7 1_555 H DG 4 1_555 -0.196 -0.237 0.161 -11.552 0.494 -2.452 37 E_DC7:DG4_H E 7 ? H 4 ? 19 1 1 E DT 8 1_555 H DA 3 1_555 -0.405 -0.229 0.273 -2.309 -1.307 -2.983 38 E_DT8:DA3_H E 8 ? H 3 ? 20 1 1 E DA 9 1_555 H DT 2 1_555 -0.329 -0.147 0.184 9.666 -8.558 8.826 39 E_DA9:DT2_H E 9 ? H 2 ? 20 1 1 E DA 10 1_555 H DT 1 1_555 0.070 -0.303 0.290 4.748 -8.471 3.285 40 E_DA10:DT1_H E 10 ? H 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DT 2 1_555 B DA 9 1_555 -0.514 -0.146 3.365 -0.874 -1.921 35.663 0.048 0.708 3.379 -3.134 1.426 35.723 1 AA_DC1DT2:DA9DG10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DT 2 1_555 B DA 9 1_555 A DA 3 1_555 B DT 8 1_555 0.369 0.193 3.766 5.167 1.114 45.955 0.136 0.040 3.787 1.421 -6.592 46.242 2 AA_DT2DA3:DT8DA9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DA 3 1_555 B DT 8 1_555 A DA 4 1_555 B DT 7 1_555 -0.311 0.539 2.891 -1.786 -1.269 29.591 1.288 0.275 2.879 -2.479 3.491 29.670 3 AA_DA3DA4:DT7DT8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DA 4 1_555 B DT 7 1_555 C DC 5 1_555 B DG 6 1_555 1.183 -1.109 3.276 -1.136 -0.701 26.943 -2.198 -2.825 3.252 -1.502 2.437 26.976 4 AC_DA4DC5:DG6DT7_BB A 4 ? B 7 ? C 5 ? B 6 ? 1 C DC 5 1_555 B DG 6 1_555 C DC 6 1_555 B DG 5 1_555 -0.054 -1.070 3.408 3.586 0.829 46.572 -1.421 0.379 3.377 1.047 -4.527 46.709 5 CC_DC5DC6:DG5DG6_BB C 5 ? B 6 ? C 6 ? B 5 ? 1 C DC 6 1_555 B DG 5 1_555 C DC 7 1_555 B DG 4 1_555 0.456 0.100 3.385 1.741 -0.472 34.131 0.248 -0.490 3.402 -0.804 -2.964 34.177 6 CC_DC6DC7:DG4DG5_BB C 6 ? B 5 ? C 7 ? B 4 ? 1 C DC 7 1_555 B DG 4 1_555 C DT 8 1_555 B DA 3 1_555 -0.428 0.315 3.059 0.405 4.408 25.477 -0.452 1.063 3.062 9.899 -0.909 25.852 7 CC_DC7DT8:DA3DG4_BB C 7 ? B 4 ? C 8 ? B 3 ? 1 C DT 8 1_555 B DA 3 1_555 C DA 9 1_555 B DT 2 1_555 0.200 1.779 3.311 0.836 -1.694 43.978 2.534 -0.188 3.246 -2.261 -1.116 44.017 8 CC_DT8DA9:DT2DA3_BB C 8 ? B 3 ? C 9 ? B 2 ? 1 C DA 9 1_555 B DT 2 1_555 C DA 10 1_555 B DT 1 1_555 -0.151 0.297 3.167 -5.235 -2.298 35.226 0.807 -0.488 3.131 -3.767 8.580 35.673 9 CC_DA9DA10:DT1DT2_BB C 9 ? B 2 ? C 10 ? B 1 ? 1 C DC 1 1_555 D DG 10 1_555 C DT 2 1_555 D DA 9 1_555 -0.348 0.120 3.394 1.138 8.867 39.908 -0.843 0.629 3.334 12.797 -1.643 40.857 10 CC_DC1DT2:DA9DG10_DD C 1 ? D 10 ? C 2 ? D 9 ? 1 C DT 2 1_555 D DA 9 1_555 C DA 3 1_555 D DT 8 1_555 -0.073 0.858 3.921 4.928 4.530 43.416 0.628 0.663 3.956 6.081 -6.614 43.904 11 CC_DT2DA3:DT8DA9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C DA 3 1_555 D DT 8 1_555 C DA 4 1_555 D DT 7 1_555 -0.431 0.132 2.730 -7.859 3.697 28.260 -0.413 -0.584 2.742 7.355 15.636 29.539 12 CC_DA3DA4:DT7DT8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 C DA 4 1_555 D DT 7 1_555 A DC 5 1_555 D DG 6 1_555 1.174 -0.528 2.945 0.372 -5.788 33.531 -0.057 -1.953 3.004 -9.940 -0.638 34.015 13 CA_DA4DC5:DG6DT7_DD C 4 ? D 7 ? A 5 ? D 6 ? 1 A DC 5 1_555 D DG 6 1_555 A DC 6 1_555 D DG 5 1_555 -0.190 -0.843 3.800 3.606 0.583 42.904 -1.216 0.671 3.761 0.795 -4.919 43.052 14 AA_DC5DC6:DG5DG6_DD A 5 ? D 6 ? A 6 ? D 5 ? 1 A DC 6 1_555 D DG 5 1_555 A DC 7 1_555 D DG 4 1_555 0.165 -0.013 3.452 -0.354 2.859 34.176 -0.496 -0.339 3.438 4.855 0.601 34.294 15 AA_DC6DC7:DG4DG5_DD A 6 ? D 5 ? A 7 ? D 4 ? 1 A DC 7 1_555 D DG 4 1_555 A DT 8 1_555 D DA 3 1_555 -0.095 0.312 3.010 1.733 7.690 32.306 -0.654 0.436 2.994 13.569 -3.059 33.229 16 AA_DC7DT8:DA3DG4_DD A 7 ? D 4 ? A 8 ? D 3 ? 1 A DT 8 1_555 D DA 3 1_555 A DA 9 1_555 D DT 2 1_555 0.576 2.289 3.048 0.608 -4.191 36.736 4.115 -0.835 2.788 -6.623 -0.961 36.971 17 AA_DT8DA9:DT2DA3_DD A 8 ? D 3 ? A 9 ? D 2 ? 1 A DA 9 1_555 D DT 2 1_555 A DA 10 1_555 D DT 1 1_555 -0.992 0.467 3.376 -3.147 0.928 44.202 0.530 1.010 3.444 1.231 4.175 44.317 18 AA_DA9DA10:DT1DT2_DD A 9 ? D 2 ? A 10 ? D 1 ? 1 E DC 1 1_555 F DG 10 1_555 E DT 2 1_555 F DA 9 1_555 -0.440 0.331 3.481 -1.113 6.643 39.850 -0.323 0.503 3.500 9.662 1.619 40.392 19 EE_DC1DT2:DA9DG10_FF E 1 ? F 10 ? E 2 ? F 9 ? 1 E DT 2 1_555 F DA 9 1_555 E DA 3 1_555 F DT 8 1_555 0.466 0.775 4.040 3.640 6.509 45.834 0.291 -0.204 4.131 8.292 -4.637 46.404 20 EE_DT2DA3:DT8DA9_FF E 2 ? F 9 ? E 3 ? F 8 ? 1 E DA 3 1_555 F DT 8 1_555 E DA 4 1_555 F DT 7 1_555 -0.200 0.198 2.609 -4.294 -0.673 30.955 0.470 -0.280 2.608 -1.254 7.995 31.251 21 EE_DA3DA4:DT7DT8_FF E 3 ? F 8 ? E 4 ? F 7 ? 1 E DA 4 1_555 F DT 7 1_555 G DC 5 1_555 F DG 6 1_555 0.680 -1.010 2.928 -0.441 -1.443 29.355 -1.712 -1.425 2.962 -2.846 0.869 29.393 22 EG_DA4DC5:DG6DT7_FF E 4 ? F 7 ? G 5 ? F 6 ? 1 G DC 5 1_555 F DG 6 1_555 G DC 6 1_555 F DG 5 1_555 -0.044 -0.928 3.746 0.750 2.229 43.118 -1.510 0.143 3.695 3.031 -1.020 43.179 23 GG_DC5DC6:DG5DG6_FF G 5 ? F 6 ? G 6 ? F 5 ? 1 G DC 6 1_555 F DG 5 1_555 G DC 7 1_555 F DG 4 1_555 0.137 0.030 3.422 1.209 -3.200 32.854 0.621 -0.027 3.407 -5.638 -2.131 33.027 24 GG_DC6DC7:DG4DG5_FF G 6 ? F 5 ? G 7 ? F 4 ? 1 G DC 7 1_555 F DG 4 1_555 G DT 8 1_555 F DA 3 1_555 -0.392 0.159 3.172 3.384 7.124 31.445 -0.933 1.281 3.075 12.893 -6.124 32.395 25 GG_DC7DT8:DA3DG4_FF G 7 ? F 4 ? G 8 ? F 3 ? 1 G DT 8 1_555 F DA 3 1_555 G DA 9 1_555 F DT 2 1_555 0.582 1.895 3.279 -0.817 -2.454 39.443 3.086 -0.955 3.148 -3.632 1.209 39.524 26 GG_DT8DA9:DT2DA3_FF G 8 ? F 3 ? G 9 ? F 2 ? 1 G DA 9 1_555 F DT 2 1_555 G DA 10 1_555 F DT 1 1_555 -0.834 0.568 3.029 -6.590 -1.798 43.830 0.910 0.529 3.092 -2.391 8.765 44.333 27 GG_DA9DA10:DT1DT2_FF G 9 ? F 2 ? G 10 ? F 1 ? 1 G DC 1 1_555 H DG 10 1_555 G DT 2 1_555 H DA 9 1_555 -0.103 -0.178 3.202 4.474 3.758 38.331 -0.717 0.689 3.140 5.684 -6.765 38.757 28 GG_DC1DT2:DA9DG10_HH G 1 ? H 10 ? G 2 ? H 9 ? 1 G DT 2 1_555 H DA 9 1_555 G DA 3 1_555 H DT 8 1_555 0.028 0.231 3.821 4.338 2.531 39.470 -0.005 0.548 3.810 3.730 -6.391 39.776 29 GG_DT2DA3:DT8DA9_HH G 2 ? H 9 ? G 3 ? H 8 ? 1 G DA 3 1_555 H DT 8 1_555 G DA 4 1_555 H DT 7 1_555 -0.449 0.198 2.878 -5.362 -0.846 30.185 0.523 -0.092 2.906 -1.609 10.193 30.658 30 GG_DA3DA4:DT7DT8_HH G 3 ? H 8 ? G 4 ? H 7 ? 1 G DA 4 1_555 H DT 7 1_555 E DC 5 1_555 H DG 6 1_555 1.141 -0.772 3.212 0.364 -3.356 33.350 -0.789 -1.918 3.284 -5.829 -0.633 33.516 31 GE_DA4DC5:DG6DT7_HH G 4 ? H 7 ? E 5 ? H 6 ? 1 E DC 5 1_555 H DG 6 1_555 E DC 6 1_555 H DG 5 1_555 -0.105 -1.209 3.580 3.283 1.107 43.497 -1.742 0.484 3.533 1.491 -4.422 43.628 32 EE_DC5DC6:DG5DG6_HH E 5 ? H 6 ? E 6 ? H 5 ? 1 E DC 6 1_555 H DG 5 1_555 E DC 7 1_555 H DG 4 1_555 0.406 0.277 3.272 4.497 0.563 34.089 0.380 0.022 3.301 0.955 -7.630 34.380 33 EE_DC6DC7:DG4DG5_HH E 6 ? H 5 ? E 7 ? H 4 ? 1 E DC 7 1_555 H DG 4 1_555 E DT 8 1_555 H DA 3 1_555 -0.230 0.416 3.175 -3.359 5.207 24.758 -0.528 -0.427 3.196 11.907 7.681 25.510 34 EE_DC7DT8:DA3DG4_HH E 7 ? H 4 ? E 8 ? H 3 ? 1 E DT 8 1_555 H DA 3 1_555 E DA 9 1_555 H DT 2 1_555 -0.070 1.874 3.100 -0.723 -2.111 40.387 2.931 0.026 3.003 -3.055 1.046 40.446 35 EE_DT8DA9:DT2DA3_HH E 8 ? H 3 ? E 9 ? H 2 ? 1 E DA 9 1_555 H DT 2 1_555 E DA 10 1_555 H DT 1 1_555 -0.470 0.044 3.346 -2.916 -2.328 37.678 0.375 0.340 3.363 -3.594 4.501 37.856 36 EE_DA9DA10:DT1DT2_HH E 9 ? H 2 ? E 10 ? H 1 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3HS1 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6GDH _atom_sites.fract_transf_matrix[1][1] 0.042135 _atom_sites.fract_transf_matrix[1][2] 0.016121 _atom_sites.fract_transf_matrix[1][3] 0.003074 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032288 _atom_sites.fract_transf_matrix[2][3] 0.006045 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012189 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P # loop_