HEADER SIGNALING PROTEIN 23-APR-18 6GDL TITLE CALMODULIN MUTANT - F141L APO-FORM UNSTRUCTURED C-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALMODULIN, SIGNALING PROTEIN, CALCIUM SIGNALLING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.HOLT,M.T.OVERGAARD,R.WIMMER REVDAT 5 08-MAY-19 6GDL 1 REMARK REVDAT 4 14-NOV-18 6GDL 1 JRNL REVDAT 3 07-NOV-18 6GDL 1 JRNL REVDAT 2 31-OCT-18 6GDL 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV SEQRES HET HETNAM REVDAT 2 3 1 FORMUL HELIX REVDAT 1 17-OCT-18 6GDL 0 JRNL AUTH K.WANG,C.HOLT,J.LU,M.BROHUS,K.T.LARSEN,M.T.OVERGAARD, JRNL AUTH 2 R.WIMMER,F.VAN PETEGEM JRNL TITL ARRHYTHMIA MUTATIONS IN CALMODULIN CAUSE CONFORMATIONAL JRNL TITL 2 CHANGES THAT AFFECT INTERACTIONS WITH THE CARDIAC JRNL TITL 3 VOLTAGE-GATED CALCIUM CHANNEL. JRNL REF PROC. NATL. ACAD. SCI. V. 115 10556 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30348784 JRNL DOI 10.1073/PNAS.1808733115 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : YASARA 18.2.7 REMARK 3 AUTHORS : KRIEGER AND VRIEND REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009202. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.1 REMARK 210 PH : 6.55 REMARK 210 IONIC STRENGTH : 24 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 580 UM [U-99% 13C; U-99% 15N] REMARK 210 CALMODULIN, 2 MM HEPES, 10 MM REMARK 210 POTASSIUM CHLORIDE, 10 MM EDTA, REMARK 210 2 MM SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HN(CA)CO; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-15N HSQC; 2D REMARK 210 CACO; 3D CBCA(CO)NH; 3D CBCANH; REMARK 210 3D HBHA(CO)NH; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HNCA; 3D HNCACB; 2D REMARK 210 (HB)CB(CGCD)HD; 2D (HB)CB(CGCDCE) REMARK 210 HE; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.97, CCPNMR ANALYSIS REMARK 210 2.4.2 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ASP A 80 REMARK 465 SER A 81 REMARK 465 GLU A 82 REMARK 465 GLU A 83 REMARK 465 GLU A 84 REMARK 465 ILE A 85 REMARK 465 ARG A 86 REMARK 465 GLU A 87 REMARK 465 ALA A 88 REMARK 465 PHE A 89 REMARK 465 ARG A 90 REMARK 465 VAL A 91 REMARK 465 PHE A 92 REMARK 465 ASP A 93 REMARK 465 LYS A 94 REMARK 465 ASP A 95 REMARK 465 GLY A 96 REMARK 465 ASN A 97 REMARK 465 GLY A 98 REMARK 465 TYR A 99 REMARK 465 ILE A 100 REMARK 465 SER A 101 REMARK 465 ALA A 102 REMARK 465 ALA A 103 REMARK 465 GLU A 104 REMARK 465 LEU A 105 REMARK 465 ARG A 106 REMARK 465 HIS A 107 REMARK 465 VAL A 108 REMARK 465 MET A 109 REMARK 465 THR A 110 REMARK 465 ASN A 111 REMARK 465 LEU A 112 REMARK 465 GLY A 113 REMARK 465 GLU A 114 REMARK 465 LYS A 115 REMARK 465 LEU A 116 REMARK 465 THR A 117 REMARK 465 ASP A 118 REMARK 465 GLU A 119 REMARK 465 GLU A 120 REMARK 465 VAL A 121 REMARK 465 ASP A 122 REMARK 465 GLU A 123 REMARK 465 MET A 124 REMARK 465 ILE A 125 REMARK 465 ARG A 126 REMARK 465 GLU A 127 REMARK 465 ALA A 128 REMARK 465 ASP A 129 REMARK 465 ILE A 130 REMARK 465 ASP A 131 REMARK 465 GLY A 132 REMARK 465 ASP A 133 REMARK 465 GLY A 134 REMARK 465 GLN A 135 REMARK 465 VAL A 136 REMARK 465 ASN A 137 REMARK 465 TYR A 138 REMARK 465 GLU A 139 REMARK 465 GLU A 140 REMARK 465 LEU A 141 REMARK 465 VAL A 142 REMARK 465 GLN A 143 REMARK 465 MET A 144 REMARK 465 MET A 145 REMARK 465 THR A 146 REMARK 465 ALA A 147 REMARK 465 LYS A 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 20 34.89 -87.02 REMARK 500 1 LYS A 21 0.48 -63.97 REMARK 500 3 ASP A 20 49.62 -81.03 REMARK 500 3 ASN A 42 76.86 -114.33 REMARK 500 3 ASP A 78 -169.38 -119.55 REMARK 500 4 ASP A 20 34.70 -81.72 REMARK 500 4 ASP A 78 -164.51 -106.22 REMARK 500 5 ASP A 20 34.69 -82.51 REMARK 500 6 GLN A 3 127.36 -178.39 REMARK 500 7 ASP A 56 37.96 -82.19 REMARK 500 8 GLN A 3 37.44 -92.85 REMARK 500 8 ASN A 42 76.44 -118.08 REMARK 500 9 ASN A 42 68.71 -119.46 REMARK 500 10 MET A 76 26.65 -70.77 REMARK 500 11 ASN A 42 70.86 -116.92 REMARK 500 12 LYS A 21 10.04 -68.49 REMARK 500 12 LYS A 77 134.87 169.06 REMARK 500 13 ASP A 2 96.90 -67.01 REMARK 500 13 GLN A 3 27.43 -146.24 REMARK 500 14 GLN A 3 90.30 55.56 REMARK 500 14 ASP A 20 44.48 -81.59 REMARK 500 15 ASN A 42 61.32 -116.73 REMARK 500 16 LEU A 4 -169.96 61.56 REMARK 500 18 LYS A 77 175.92 73.24 REMARK 500 19 ASP A 20 46.06 -82.31 REMARK 500 19 ASP A 56 52.35 -109.00 REMARK 500 20 ASP A 20 23.72 -76.96 REMARK 500 20 LYS A 21 5.95 -68.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34263 RELATED DB: BMRB REMARK 900 CALMODULIN MUTANT - F141L APO-FORM UNSTRUCTURED C-DOMAIN DBREF 6GDL A 1 148 UNP P0DP23 CALM1_HUMAN 2 149 SEQADV 6GDL LEU A 141 UNP P0DP23 PHE 142 ENGINEERED MUTATION SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU LEU VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS HELIX 1 AA1 THR A 5 ASP A 20 1 16 HELIX 2 AA2 GLU A 31 LEU A 39 1 9 HELIX 3 AA3 THR A 44 ASP A 56 1 13 HELIX 4 AA4 PHE A 65 LYS A 75 1 11 SHEET 1 AA1 2 THR A 26 THR A 28 0 SHEET 2 AA1 2 THR A 62 ASP A 64 -1 O ILE A 63 N ILE A 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1