HEADER LIGASE 24-APR-18 6GDR TITLE DNA BINDING WITH A MINIMAL SCAFFOLD: STRUCTURE-FUNCTION ANALYSIS OF TITLE 2 LIG E DNA LIGASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)- COMPND 4 3'); COMPND 5 CHAIN: B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA LIGASE; COMPND 17 CHAIN: A; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALTEROMONAS MEDITERRANEA; SOURCE 3 ORGANISM_TAXID: 314275; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ALTEROMONAS MEDITERRANEA; SOURCE 8 ORGANISM_TAXID: 314275; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: ALTEROMONAS MEDITERRANEA; SOURCE 13 ORGANISM_TAXID: 314275; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: ALTEROMONAS MEDITERRANEA; SOURCE 18 ORGANISM_TAXID: 314275; SOURCE 19 GENE: BM525_03130; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA LIGASES, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WILLIAMSON,M.GRIGIC,H.K.S.LEIROS REVDAT 2 03-OCT-18 6GDR 1 JRNL REVDAT 1 25-JUL-18 6GDR 0 JRNL AUTH A.WILLIAMSON,M.GRGIC,H.S.LEIROS JRNL TITL DNA BINDING WITH A MINIMAL SCAFFOLD: STRUCTURE-FUNCTION JRNL TITL 2 ANALYSIS OF LIG E DNA LIGASES. JRNL REF NUCLEIC ACIDS RES. V. 46 8616 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30007325 JRNL DOI 10.1093/NAR/GKY622 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 22708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8409 - 4.6455 0.98 2748 146 0.1712 0.1868 REMARK 3 2 4.6455 - 3.6912 0.99 2718 143 0.1790 0.2609 REMARK 3 3 3.6912 - 3.2257 0.98 2665 153 0.2211 0.2791 REMARK 3 4 3.2257 - 2.9313 0.99 2707 143 0.2640 0.2992 REMARK 3 5 2.9313 - 2.7215 1.00 2727 121 0.3067 0.4008 REMARK 3 6 2.7215 - 2.5612 0.98 2669 141 0.3195 0.3639 REMARK 3 7 2.5612 - 2.4330 1.00 2702 149 0.3150 0.3433 REMARK 3 8 2.4330 - 2.3272 0.97 2629 147 0.3038 0.3323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3090 REMARK 3 ANGLE : 0.556 4350 REMARK 3 CHIRALITY : 0.040 469 REMARK 3 PLANARITY : 0.002 405 REMARK 3 DIHEDRAL : 19.829 1661 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 47.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HOMOLOGY MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 4K, 100 MM BIS-TRIS PH 5.5, REMARK 280 12% ETHYLENEGLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.58978 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.60350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.37284 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.58978 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.60350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 58.37284 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 HIS A 5 REMARK 465 ASP A 6 REMARK 465 SER A 20 REMARK 465 ARG A 21 REMARK 465 SER A 94 REMARK 465 VAL A 95 REMARK 465 ALA A 96 REMARK 465 PRO A 97 REMARK 465 GLN A 98 REMARK 465 SER A 99 REMARK 465 VAL A 100 REMARK 465 ALA A 101 REMARK 465 GLY A 102 REMARK 465 SER A 103 REMARK 465 LEU A 104 REMARK 465 PRO A 105 REMARK 465 ARG A 106 REMARK 465 THR A 107 REMARK 465 GLU A 108 REMARK 465 SER A 109 REMARK 465 THR A 110 REMARK 465 VAL A 111 REMARK 465 ASP A 112 REMARK 465 ALA A 113 REMARK 465 MET A 114 REMARK 465 THR A 115 REMARK 465 ALA A 116 REMARK 465 THR A 117 REMARK 465 HIS A 118 REMARK 465 SER A 119 REMARK 465 PRO A 291 REMARK 465 PRO A 292 REMARK 465 SER A 293 REMARK 465 ASP A 294 REMARK 465 LEU A 295 REMARK 465 PRO A 296 REMARK 465 LYS A 297 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 22 CB CG CD OE1 NE2 REMARK 480 LEU A 120 CD1 CD2 REMARK 480 LYS A 123 CG CD CE NZ REMARK 480 LYS A 196 NZ REMARK 480 LYS A 231 NZ REMARK 480 LYS A 256 CD CE NZ REMARK 480 ARG A 290 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG B 5 HZ3 LYS A 15 1.56 REMARK 500 O1 PO4 B 102 O HOH B 201 1.99 REMARK 500 O3 PO4 B 101 O HOH B 202 2.01 REMARK 500 O1 PO4 B 101 O HOH B 203 2.02 REMARK 500 OP2 DT D 37 O HOH D 401 2.04 REMARK 500 O2 PO4 B 101 O HOH B 204 2.05 REMARK 500 O3 PO4 B 101 O HOH B 205 2.08 REMARK 500 O4 PO4 B 102 O HOH B 206 2.11 REMARK 500 OP2 DG B 5 NZ LYS A 15 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 30 C2' DC C 30 C1' -0.201 REMARK 500 DC C 30 O4' DC C 30 C1' 0.218 REMARK 500 DC C 30 O4' DC C 30 C4' -0.157 REMARK 500 DC C 30 O3' DC C 30 C3' -0.091 REMARK 500 DC C 30 C4 DC C 30 N4 0.078 REMARK 500 DC C 30 N1 DC C 30 C6 0.068 REMARK 500 DC C 30 C2 DC C 30 N3 0.112 REMARK 500 DC C 30 N3 DC C 30 C4 0.078 REMARK 500 DC C 30 C4 DC C 30 C5 0.049 REMARK 500 DC C 30 C5 DC C 30 C6 0.120 REMARK 500 DC D 32 P DC D 32 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 -86.73 -66.60 REMARK 500 ASP A 23 -34.15 -130.91 REMARK 500 LYS A 67 56.84 -104.92 REMARK 500 ILE A 76 -66.82 -109.27 REMARK 500 PRO A 121 160.42 -44.30 REMARK 500 SER A 170 -85.65 -112.64 REMARK 500 ALA A 260 70.88 60.40 REMARK 500 TYR A 273 76.52 -112.72 REMARK 500 LEU A 287 -81.55 -111.95 REMARK 500 VAL A 289 -157.76 -79.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP D 300 DBREF 6GDR B 1 21 PDB 6GDR 6GDR 1 21 DBREF 6GDR C 22 31 PDB 6GDR 6GDR 22 31 DBREF 6GDR D 32 42 PDB 6GDR 6GDR 32 42 DBREF1 6GDR A 1 297 UNP A0A1J0SCU0_9ALTE DBREF2 6GDR A A0A1J0SCU0 21 317 SEQADV 6GDR GLY A 1 UNP A0A1J0SCU ALA 21 CONFLICT SEQADV 6GDR HIS A 5 UNP A0A1J0SCU LEU 25 CONFLICT SEQADV 6GDR GLY A 18 UNP A0A1J0SCU SER 38 CONFLICT SEQADV 6GDR ASP A 56 UNP A0A1J0SCU ALA 76 CONFLICT SEQADV 6GDR GLN A 98 UNP A0A1J0SCU HIS 118 CONFLICT SEQADV 6GDR ASP A 112 UNP A0A1J0SCU GLY 132 CONFLICT SEQADV 6GDR VAL A 128 UNP A0A1J0SCU ILE 148 CONFLICT SEQADV 6GDR ILE A 208 UNP A0A1J0SCU LEU 228 CONFLICT SEQADV 6GDR PHE A 224 UNP A0A1J0SCU LEU 244 CONFLICT SEQADV 6GDR ALA A 225 UNP A0A1J0SCU PRO 245 CONFLICT SEQADV 6GDR ARG A 259 UNP A0A1J0SCU GLN 279 CONFLICT SEQADV 6GDR VAL A 264 UNP A0A1J0SCU ILE 284 CONFLICT SEQRES 1 B 21 DT DT DC DC DG DA DT DA DG DT DG DG DG SEQRES 2 B 21 DG DT DC DG DC DA DA DT SEQRES 1 C 10 DA DT DT DG DC DG DA DC DC DC SEQRES 1 D 11 DC DA DC DT DA DT DC DG DG DA DA SEQRES 1 A 297 GLY GLU ASP LYS HIS ASP ILE VAL ASP GLY LEU GLN LEU SEQRES 2 A 297 ALA LYS GLN TYR GLY HIS SER ARG GLN ASP ILE ASN ILE SEQRES 3 A 297 ALA GLU TYR TRP VAL SER GLU LYS LEU ASP GLY ILE ARG SEQRES 4 A 297 ALA ARG TRP ASP GLY THR GLU LEU ARG THR ARG ASN ASN SEQRES 5 A 297 ASN LYS ILE ASP ALA PRO ALA TRP PHE THR ALA ASN TRP SEQRES 6 A 297 PRO LYS ALA THR ILE ASP GLY GLU LEU TRP ILE ALA ARG SEQRES 7 A 297 GLY GLN PHE GLU ARG THR ALA SER ILE VAL LEU SER LYS SEQRES 8 A 297 LEU THR SER VAL ALA PRO GLN SER VAL ALA GLY SER LEU SEQRES 9 A 297 PRO ARG THR GLU SER THR VAL ASP ALA MET THR ALA THR SEQRES 10 A 297 HIS SER LEU PRO SER LYS ARG TRP ALA LYS VAL ARG PHE SEQRES 11 A 297 MET ALA PHE ASP MET PRO VAL ALA GLY GLN SER PHE ASP SEQRES 12 A 297 SER ARG LEU ASN MET LEU ASN ASN LEU LYS GLU ALA THR SEQRES 13 A 297 PRO ASN PRO THR PHE ALA VAL VAL SER GLN PHE THR LEU SEQRES 14 A 297 SER SER VAL ASN ALA LEU GLU GLU LYS LEU GLU GLN VAL SEQRES 15 A 297 THR LEU SER GLY GLY GLU GLY LEU MET LEU HIS HIS LYS SEQRES 16 A 297 LYS ALA PHE TYR HIS SER GLY ARG SER ASP LYS LEU ILE SEQRES 17 A 297 LYS VAL LYS GLN PHE GLU ASP ALA GLU ALA LYS VAL LEU SEQRES 18 A 297 ALA HIS PHE ALA GLY LYS GLY LYS PHE LYS GLY MET MET SEQRES 19 A 297 GLY SER LEU LEU VAL GLU THR PRO ALA GLY VAL GLN PHE SEQRES 20 A 297 LYS LEU GLY THR GLY PHE SER GLU LYS GLU ARG ARG ALA SEQRES 21 A 297 PRO PRO ALA VAL GLY SER TRP VAL THR PHE LYS PHE TYR SEQRES 22 A 297 GLY VAL THR LYS ASN GLY LYS PRO ARG PHE ALA SER PHE SEQRES 23 A 297 LEU ARG VAL ARG PRO PRO SER ASP LEU PRO LYS HET PO4 B 101 5 HET PO4 B 102 5 HET AMP D 300 34 HETNAM PO4 PHOSPHATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 AMP C10 H14 N5 O7 P FORMUL 8 HOH *69(H2 O) HELIX 1 AA1 ASN A 25 ALA A 27 5 3 HELIX 2 AA2 PRO A 58 ALA A 63 1 6 HELIX 3 AA3 GLN A 80 SER A 90 1 11 HELIX 4 AA4 SER A 122 VAL A 128 5 7 HELIX 5 AA5 SER A 141 ALA A 155 1 15 HELIX 6 AA6 SER A 171 SER A 185 1 15 HELIX 7 AA7 LYS A 227 LYS A 231 5 5 HELIX 8 AA8 SER A 254 ARG A 259 1 6 SHEET 1 AA1 4 LYS A 15 GLN A 16 0 SHEET 2 AA1 4 LEU A 207 VAL A 210 1 O LYS A 209 N LYS A 15 SHEET 3 AA1 4 GLY A 189 HIS A 194 -1 N LEU A 192 O ILE A 208 SHEET 4 AA1 4 TYR A 29 LYS A 34 -1 N TRP A 30 O HIS A 193 SHEET 1 AA2 5 LEU A 47 ARG A 48 0 SHEET 2 AA2 5 ILE A 38 TRP A 42 -1 N ARG A 41 O ARG A 48 SHEET 3 AA2 5 ILE A 70 TRP A 75 -1 O ILE A 70 N TRP A 42 SHEET 4 AA2 5 ARG A 129 ASP A 134 -1 O ASP A 134 N ASP A 71 SHEET 5 AA2 5 PHE A 161 VAL A 163 1 O ALA A 162 N PHE A 130 SHEET 1 AA3 5 GLN A 246 LEU A 249 0 SHEET 2 AA3 5 MET A 234 GLU A 240 -1 N LEU A 237 O LEU A 249 SHEET 3 AA3 5 GLU A 214 ALA A 225 -1 N LEU A 221 O LEU A 238 SHEET 4 AA3 5 TRP A 267 PHE A 272 -1 O VAL A 268 N ALA A 218 SHEET 5 AA3 5 SER A 285 VAL A 289 -1 O ARG A 288 N THR A 269 LINK OP2 DC D 32 P AMP D 300 1555 1555 1.62 SITE 1 AC1 5 DG B 11 HOH B 202 HOH B 203 HOH B 204 SITE 2 AC1 5 HOH B 205 SITE 1 AC2 6 DG B 13 DG B 14 HOH B 201 HOH B 206 SITE 2 AC2 6 HOH B 208 HOH B 210 SITE 1 AC3 14 SER A 32 GLU A 33 LYS A 34 LEU A 35 SITE 2 AC3 14 ARG A 39 ARG A 50 GLU A 73 PHE A 133 SITE 3 AC3 14 VAL A 164 MET A 191 LYS A 209 DC D 32 SITE 4 AC3 14 DA D 33 HOH D 408 CRYST1 65.024 71.207 117.160 90.00 94.82 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015379 0.000000 0.001297 0.00000 SCALE2 0.000000 0.014044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008566 0.00000