HEADER TRANSFERASE 27-APR-18 6GEW TITLE OPHA Y63F-SINEFUNGIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: OPHA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OMPHALOTUS OLEARIUS; SOURCE 3 ORGANISM_TAXID: 72120; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS PEPTIDE N-TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SONG,J.H.NAISMITH REVDAT 3 20-NOV-24 6GEW 1 REMARK REVDAT 2 17-JAN-24 6GEW 1 REMARK REVDAT 1 19-SEP-18 6GEW 0 JRNL AUTH H.SONG,N.S.VAN DER VELDEN,S.L.SHIRAN,P.BLEIZIFFER,C.ZACH, JRNL AUTH 2 R.SIEBER,A.S.IMANI,F.KRAUSBECK,M.AEBI,M.F.FREEMAN,S.RINIKER, JRNL AUTH 3 M.KUNZLER,J.H.NAISMITH JRNL TITL A MOLECULAR MECHANISM FOR THE ENZYMATIC METHYLATION OF JRNL TITL 2 NITROGEN ATOMS WITHIN PEPTIDE BONDS. JRNL REF SCI ADV V. 4 T2720 2018 JRNL REFN ESSN 2375-2548 JRNL PMID 30151425 JRNL DOI 10.1126/SCIADV.AAT2720 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2987 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.5190 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.5650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -1.53000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.221 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3055 ; 0.008 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 2734 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4158 ; 1.097 ; 1.799 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6410 ; 0.402 ; 1.749 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.101 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;32.666 ;21.053 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 444 ;15.331 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3402 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 551 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1507 ; 0.955 ; 4.747 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1507 ; 0.955 ; 4.747 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1875 ; 1.684 ; 7.114 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1876 ; 1.684 ; 7.112 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1547 ; 0.765 ; 4.861 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1548 ; 0.764 ; 4.860 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2284 ; 1.362 ; 7.247 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3322 ; 3.513 ;56.540 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3322 ; 3.510 ;56.522 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 42.4661 -0.6673 24.7433 REMARK 3 T TENSOR REMARK 3 T11: 0.5019 T22: 0.2596 REMARK 3 T33: 0.0013 T12: -0.0099 REMARK 3 T13: -0.0116 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.4821 L22: 0.7997 REMARK 3 L33: 6.0971 L12: -0.0597 REMARK 3 L13: -0.0603 L23: -0.4653 REMARK 3 S TENSOR REMARK 3 S11: -0.1921 S12: -0.0067 S13: 0.0201 REMARK 3 S21: -0.0367 S22: 0.2271 S23: -0.0070 REMARK 3 S31: 0.0708 S32: -0.4312 S33: -0.0350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 77.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 1.01700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3-0.4 M KSCN, 0.1 M BICINE PH 8-9, REMARK 280 1.7-2.0 M SODIUM MALONATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.60133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.30067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.30067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.60133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.30067 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 LEU A 267 REMARK 465 PRO A 268 REMARK 465 ALA A 269 REMARK 465 GLY A 270 REMARK 465 GLN A 271 REMARK 465 VAL A 272 REMARK 465 PRO A 273 REMARK 465 ASP A 274 REMARK 465 LYS A 275 REMARK 465 LYS A 276 REMARK 465 ALA A 277 REMARK 465 ALA A 385 REMARK 465 ALA A 386 REMARK 465 ARG A 387 REMARK 465 GLU A 388 REMARK 465 SER A 389 REMARK 465 GLY A 390 REMARK 465 GLU A 391 REMARK 465 GLU A 392 REMARK 465 ALA A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 ASN A 396 REMARK 465 GLY A 397 REMARK 465 ILE A 407 REMARK 465 GLY A 408 REMARK 465 VAL A 409 REMARK 465 ILE A 410 REMARK 465 GLY A 411 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 22 -58.12 75.76 REMARK 500 ASN A 58 70.17 -101.58 REMARK 500 CYS A 175 51.79 -149.86 REMARK 500 ASP A 180 -165.03 -123.51 REMARK 500 ASP A 288 53.95 -100.86 REMARK 500 TYR A 295 70.61 -111.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 110 0.08 SIDE CHAIN REMARK 500 ARG A 121 0.08 SIDE CHAIN REMARK 500 ARG A 123 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 502 DBREF 6GEW A 2 411 PDB 6GEW 6GEW 2 411 SEQRES 1 A 410 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 A 410 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 A 410 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 A 410 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 A 410 THR LYS ASN LYS ASN CYS VAL ASP LEU PHE GLN TYR TYR SEQRES 6 A 410 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 A 410 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 A 410 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 A 410 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 A 410 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 A 410 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 A 410 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 A 410 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 A 410 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 A 410 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 A 410 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 A 410 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 A 410 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 A 410 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 A 410 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 A 410 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 A 410 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 A 410 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 A 410 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 A 410 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 A 410 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 A 410 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 A 410 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 A 410 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 A 410 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 A 410 GLU ALA SER GLN ASN GLY PHE PRO TRP MVA ILE VAL VAL SEQRES 32 A 410 GLY VAL ILE GLY VAL ILE GLY HET MVA A 401 8 HET SAH A 501 26 HET SFG A 502 27 HETNAM MVA N-METHYLVALINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM SFG SINEFUNGIN HETSYN SFG ADENOSYL-ORNITHINE FORMUL 1 MVA C6 H13 N O2 FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 SFG C15 H23 N7 O5 FORMUL 4 HOH *19(H2 O) HELIX 1 AA1 THR A 26 ALA A 36 1 11 HELIX 2 AA2 ASP A 45 ASN A 56 1 12 HELIX 3 AA3 PHE A 63 TYR A 66 5 4 HELIX 4 AA4 SER A 71 LYS A 89 1 19 HELIX 5 AA5 VAL A 105 GLU A 118 1 14 HELIX 6 AA6 SER A 129 CYS A 139 1 11 HELIX 7 AA7 ALA A 152 ARG A 158 1 7 HELIX 8 AA8 VAL A 173 VAL A 176 5 4 HELIX 9 AA9 LYS A 190 GLY A 203 1 14 HELIX 10 AB1 ALA A 229 ARG A 232 5 4 HELIX 11 AB2 GLU A 233 LYS A 238 1 6 HELIX 12 AB3 ASN A 257 LEU A 264 1 8 HELIX 13 AB4 ARG A 296 GLN A 305 1 10 HELIX 14 AB5 SER A 321 ASP A 334 1 14 HELIX 15 AB6 ASP A 334 ASP A 344 1 11 HELIX 16 AB7 ASP A 344 VAL A 352 1 9 HELIX 17 AB8 THR A 356 GLY A 366 1 11 HELIX 18 AB9 ASP A 367 LYS A 376 1 10 SHEET 1 AA1 5 CYS A 59 ASP A 61 0 SHEET 2 AA1 5 LYS A 38 CYS A 42 1 N TYR A 41 O VAL A 60 SHEET 3 AA1 5 ASP A 92 PHE A 97 1 O VAL A 94 N LYS A 38 SHEET 4 AA1 5 SER A 11 GLY A 16 1 N VAL A 15 O GLY A 95 SHEET 5 AA1 5 ARG A 121 MET A 124 1 O ARG A 123 N ILE A 14 SHEET 1 AA2 5 CYS A 147 GLU A 151 0 SHEET 2 AA2 5 HIS A 167 PHE A 171 1 O HIS A 167 N LEU A 148 SHEET 3 AA2 5 THR A 245 ILE A 248 -1 O ILE A 248 N LEU A 168 SHEET 4 AA2 5 PRO A 207 ILE A 212 -1 N TYR A 211 O THR A 245 SHEET 5 AA2 5 VAL A 222 THR A 227 -1 O ASP A 224 N HIS A 210 LINK C TRP A 400 N MVA A 401 1555 1555 1.35 LINK C MVA A 401 N ILE A 402 1555 1555 1.33 CISPEP 1 ASN A 144 PRO A 145 0 10.91 CISPEP 2 TYR A 280 PRO A 281 0 -0.65 SITE 1 AC1 20 ILE A 19 TYR A 98 GLY A 99 HIS A 100 SITE 2 AC1 20 VAL A 103 PHE A 104 VAL A 105 SER A 129 SITE 3 AC1 20 ALA A 130 PHE A 171 GLN A 172 TYR A 211 SITE 4 AC1 20 ILE A 212 ALA A 213 GLY A 242 VAL A 243 SITE 5 AC1 20 SER A 244 THR A 245 SFG A 502 HOH A 610 SITE 1 AC2 21 ILE A 19 TYR A 98 GLY A 99 HIS A 100 SITE 2 AC2 21 VAL A 103 PHE A 104 VAL A 105 SER A 129 SITE 3 AC2 21 ALA A 130 PHE A 171 GLN A 172 TYR A 211 SITE 4 AC2 21 ILE A 212 ALA A 213 GLY A 242 VAL A 243 SITE 5 AC2 21 SER A 244 THR A 245 VAL A 403 SAH A 501 SITE 6 AC2 21 HOH A 610 CRYST1 89.784 89.784 156.902 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011138 0.006430 0.000000 0.00000 SCALE2 0.000000 0.012861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006373 0.00000