HEADER IMMUNE SYSTEM 29-APR-18 6GF2 TITLE THE STRUCTURE OF THE UBIQUITIN-LIKE MODIFIER FAT10 REVEALS A NOVEL TITLE 2 TARGETING MECHANISM FOR DEGRADATION BY THE 26S PROTEASOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIUBIQUITIN,UBIQUITIN-LIKE PROTEIN FAT10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBD, FAT10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL KEYWDS FAT10, UBIQUITIN-LIKE MODIFIER, PROTEASOME, DEGRADATION, IMMUNE KEYWDS 2 SYSTEM EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.AICHEM,S.ANDERS,N.CATONE,P.ROESSLER,S.STOTZ,A.BERG,R.SCHWAB, AUTHOR 2 S.SCHEUERMANN,J.BIALAS,G.SCHMIDTKE,C.PETER,M.GROETTRUP,S.WIESNER REVDAT 3 14-JUN-23 6GF2 1 REMARK REVDAT 2 29-AUG-18 6GF2 1 JRNL REVDAT 1 08-AUG-18 6GF2 0 JRNL AUTH A.AICHEM,S.ANDERS,N.CATONE,S.STOTZ,A.BERG,R.SCHWAB, JRNL AUTH 2 S.SCHEUERMANN,J.BIALAS,M.C.SCHUTZ-STOFFREGEN,G.SCHMIDTKE, JRNL AUTH 3 C.PETER,M.GROETTRUP,S.WIESNER JRNL TITL THE STRUCTURE OF THE UBIQUITIN-LIKE MODIFIER FAT10 REVEALS JRNL TITL 2 AN ALTERNATIVE TARGETING MECHANISM FOR PROTEASOMAL JRNL TITL 3 DEGRADATION. JRNL REF NAT COMMUN V. 9 3321 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30127417 JRNL DOI 10.1038/S41467-018-05776-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XEASY, ARIA 1.2 REMARK 3 AUTHORS : BARTELS ET AL. (XEASY), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009823. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT MBAR REMARK 210 SAMPLE CONTENTS : 2.0 MM [U-99% 13C; U-99% 15N] REMARK 210 FAT10 C-DOMAIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 2D 1H-1H REMARK 210 NOESY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-13C-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 55 96.41 -54.94 REMARK 500 1 ILE A 83 -74.27 -80.15 REMARK 500 2 ALA A 2 -5.83 -148.72 REMARK 500 2 MET A 3 -65.92 -142.11 REMARK 500 2 GLU A 6 -71.52 -128.04 REMARK 500 2 ASN A 55 96.71 -57.87 REMARK 500 2 LYS A 72 108.43 -56.82 REMARK 500 2 SER A 82 -34.80 -151.46 REMARK 500 3 ALA A 2 -73.86 -88.57 REMARK 500 3 ASN A 55 97.43 -59.84 REMARK 500 3 LYS A 72 109.50 -52.35 REMARK 500 4 ALA A 2 -9.93 -140.12 REMARK 500 4 ASN A 55 96.83 -57.74 REMARK 500 4 SER A 82 -37.08 -155.22 REMARK 500 4 ILE A 83 98.99 60.26 REMARK 500 5 ALA A 2 153.64 64.31 REMARK 500 5 ASP A 5 -26.63 -146.20 REMARK 500 5 ASN A 55 97.24 -58.86 REMARK 500 5 ILE A 83 -84.09 62.08 REMARK 500 6 ALA A 2 -64.87 -143.98 REMARK 500 6 MET A 3 96.73 58.42 REMARK 500 6 ASN A 55 96.25 -55.63 REMARK 500 6 ILE A 83 100.75 61.87 REMARK 500 7 ALA A 2 101.24 60.77 REMARK 500 7 ASP A 5 -55.50 -164.34 REMARK 500 7 ASN A 55 97.41 -57.63 REMARK 500 7 ILE A 83 -63.64 -124.41 REMARK 500 8 ASN A 55 97.77 -56.07 REMARK 500 8 ILE A 70 -176.92 -69.91 REMARK 500 8 ILE A 83 -25.25 71.69 REMARK 500 9 GLU A 6 -169.41 -63.44 REMARK 500 9 ASN A 55 96.51 -54.31 REMARK 500 9 ILE A 70 -177.02 -68.68 REMARK 500 9 LYS A 72 109.70 -56.89 REMARK 500 9 SER A 82 -71.96 -74.90 REMARK 500 10 MET A 3 -18.74 -156.93 REMARK 500 10 ASN A 55 97.33 -56.83 REMARK 500 10 SER A 82 99.50 50.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27466 RELATED DB: BMRB DBREF 6GF2 A 5 85 UNP O15205 UBD_HUMAN 85 165 SEQADV 6GF2 GLY A 1 UNP O15205 EXPRESSION TAG SEQADV 6GF2 ALA A 2 UNP O15205 EXPRESSION TAG SEQADV 6GF2 MET A 3 UNP O15205 EXPRESSION TAG SEQADV 6GF2 GLY A 4 UNP O15205 EXPRESSION TAG SEQADV 6GF2 LEU A 54 UNP O15205 CYS 134 CONFLICT SEQADV 6GF2 SER A 80 UNP O15205 CYS 160 CONFLICT SEQADV 6GF2 SER A 82 UNP O15205 CYS 162 CONFLICT SEQRES 1 A 85 GLY ALA MET GLY ASP GLU GLU LEU PRO LEU PHE LEU VAL SEQRES 2 A 85 GLU SER GLY ASP GLU ALA LYS ARG HIS LEU LEU GLN VAL SEQRES 3 A 85 ARG ARG SER SER SER VAL ALA GLN VAL LYS ALA MET ILE SEQRES 4 A 85 GLU THR LYS THR GLY ILE ILE PRO GLU THR GLN ILE VAL SEQRES 5 A 85 THR LEU ASN GLY LYS ARG LEU GLU ASP GLY LYS MET MET SEQRES 6 A 85 ALA ASP TYR GLY ILE ARG LYS GLY ASN LEU LEU PHE LEU SEQRES 7 A 85 ALA SER TYR SER ILE GLY GLY HELIX 1 AA1 SER A 31 THR A 43 1 13 HELIX 2 AA2 ILE A 46 GLU A 48 5 3 HELIX 3 AA3 MET A 64 GLY A 69 5 6 SHEET 1 AA1 4 ARG A 21 LEU A 23 0 SHEET 2 AA1 4 LEU A 10 GLU A 14 -1 N LEU A 12 O HIS A 22 SHEET 3 AA1 4 ASN A 74 SER A 80 1 O LEU A 76 N VAL A 13 SHEET 4 AA1 4 GLN A 50 THR A 53 -1 N ILE A 51 O ALA A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1