data_6GF6 # _entry.id 6GF6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6GF6 WWPDB D_1200009771 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Zn derivative' 6GF7 unspecified PDB 'Orthorhombic crystal form of the same protein, fully glycosylated' 6GF8 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GF6 _pdbx_database_status.recvd_initial_deposition_date 2018-04-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nishimura, K.' 1 ? 'Jovine, L.' 2 0000-0002-2679-6946 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nat Commun' ? ? 2041-1723 ? ? 10 ? 3086 3086 'Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.' 2019 ? 10.1038/s41467-019-10931-5 31300655 ? ? ? ? ? ? ? ? UK ? ? 1 'J. Mol. Biol.' JMOBAK 0070 0022-2836 ? ? 181 ? 253 264 'Mouse egg extracellular coat is a matrix of interconnected filaments possessing a structural repeat.' 1985 ? ? 3845123 ? ? ? ? ? ? ? ? UK ? ? 2 Development ? ? 0950-1991 ? ? 126 ? 3847 3855 'Abnormal zonae pellucidae in mice lacking ZP1 result in early embryonic loss.' 1999 ? ? 10433913 ? ? ? ? ? ? ? ? ? ? ? 3 'Biol. Reprod.' ? ? 0006-3363 ? ? 64 ? 822 830 ;Morphological and biochemical changes of isolated chicken egg-envelope during sperm penetration: degradation of the 97-kilodalton glycoprotein is involved in sperm-driven hole formation on the egg-envelope. ; 2001 ? ? 11207197 ? ? ? ? ? ? ? ? UK ? ? 4 'Biochem. J.' BIJOAK 0043 1470-8728 ? ? 384 ? 191 199 ;A newly identified zona pellucida glycoprotein, ZPD, and dimeric ZP1 of chicken egg envelope are involved in sperm activation on sperm-egg interaction. ; 2004 ? 10.1042/BJ20040299 15264999 ? ? ? ? ? ? ? ? US ? ? 5 'N. Engl. J. Med.' ? ? 1533-4406 ? ? 370 ? 1220 1226 'Mutant ZP1 in familial infertility.' 2014 ? 10.1056/NEJMoa1308851 24670168 ? ? ? ? ? ? ? ? NE ? ? 6 'FEBS Open Bio' ? ? 2211-5463 ? ? 5 ? 454 465 ;Identification of distinctive interdomain interactions among ZP-N, ZP-C and other domains of zona pellucida glycoproteins underlying association of chicken egg-coat matrix. ; 2015 ? 10.1016/j.fob.2015.05.005 26106520 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nishimura, K.' 1 ? primary 'Dioguardi, E.' 2 ? primary 'Nishio, S.' 3 ? primary 'Villa, A.' 4 ? primary 'Han, L.' 5 ? primary 'Matsuda, T.' 6 ? primary 'Jovine, L.' 7 ? 1 'Greve, J.M.' 8 ? 1 'Wassarman, P.M.' 9 ? 2 'Rankin, T.' 10 ? 2 'Talbot, P.' 11 ? 2 'Lee, E.' 12 ? 2 'Dean, J.' 13 ? 3 'Takeuchi, Y.' 14 ? 3 'Cho, R.' 15 ? 3 'Iwata, Y.' 16 ? 3 'Nishimura, K.' 17 ? 3 'Kato, T.' 18 ? 3 'Aoki, N.' 19 ? 3 'Kitajima, K.' 20 ? 3 'Matsuda, T.' 21 ? 4 'Okumura, H.' 22 ? 4 'Kohno, Y.' 23 ? 4 'Iwata, Y.' 24 ? 4 'Mori, H.' 25 ? 4 'Aoki, N.' 26 ? 4 'Sato, C.' 27 ? 4 'Kitajima, K.' 28 ? 4 'Nadano, D.' 29 ? 4 'Matsuda, T.' 30 ? 5 'Huang, H.L.' 31 ? 5 'Lv, C.' 32 ? 5 'Zhao, Y.C.' 33 ? 5 'Li, W.' 34 ? 5 'He, X.M.' 35 ? 5 'Li, P.' 36 ? 5 'Sha, A.G.' 37 ? 5 'Tian, X.' 38 ? 5 'Papasian, C.J.' 39 ? 5 'Deng, H.W.' 40 ? 5 'Lu, G.X.' 41 ? 5 'Xiao, H.M.' 42 ? 6 'Okumura, H.' 43 ? 6 'Sato, T.' 44 ? 6 'Sakuma, R.' 45 ? 6 'Fukushima, H.' 46 ? 6 'Matsuda, T.' 47 ? 6 'Ujita, M.' 48 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6GF6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 75.980 _cell.length_a_esd ? _cell.length_b 75.980 _cell.length_b_esd ? _cell.length_c 101.880 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1' 15485.485 2 ? 'N121Q, G140H(6), G149S' ? ? 2 non-polymer nat 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 88 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DAAQPALLQYHYDCGDFGMQLLAYPTRGRTVHFKVLDEFGTRFEVANCSICMHWLNTGEDGGLIFSAGYEGCHVLVKDGR YVLRVQLEEMLLSGVVAASYEVQMTCPRPAGYEILRDEKVHHHHHHHHQRPDRGNS ; _entity_poly.pdbx_seq_one_letter_code_can ;DAAQPALLQYHYDCGDFGMQLLAYPTRGRTVHFKVLDEFGTRFEVANCSICMHWLNTGEDGGLIFSAGYEGCHVLVKDGR YVLRVQLEEMLLSGVVAASYEVQMTCPRPAGYEILRDEKVHHHHHHHHQRPDRGNS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 ALA n 1 4 GLN n 1 5 PRO n 1 6 ALA n 1 7 LEU n 1 8 LEU n 1 9 GLN n 1 10 TYR n 1 11 HIS n 1 12 TYR n 1 13 ASP n 1 14 CYS n 1 15 GLY n 1 16 ASP n 1 17 PHE n 1 18 GLY n 1 19 MET n 1 20 GLN n 1 21 LEU n 1 22 LEU n 1 23 ALA n 1 24 TYR n 1 25 PRO n 1 26 THR n 1 27 ARG n 1 28 GLY n 1 29 ARG n 1 30 THR n 1 31 VAL n 1 32 HIS n 1 33 PHE n 1 34 LYS n 1 35 VAL n 1 36 LEU n 1 37 ASP n 1 38 GLU n 1 39 PHE n 1 40 GLY n 1 41 THR n 1 42 ARG n 1 43 PHE n 1 44 GLU n 1 45 VAL n 1 46 ALA n 1 47 ASN n 1 48 CYS n 1 49 SER n 1 50 ILE n 1 51 CYS n 1 52 MET n 1 53 HIS n 1 54 TRP n 1 55 LEU n 1 56 ASN n 1 57 THR n 1 58 GLY n 1 59 GLU n 1 60 ASP n 1 61 GLY n 1 62 GLY n 1 63 LEU n 1 64 ILE n 1 65 PHE n 1 66 SER n 1 67 ALA n 1 68 GLY n 1 69 TYR n 1 70 GLU n 1 71 GLY n 1 72 CYS n 1 73 HIS n 1 74 VAL n 1 75 LEU n 1 76 VAL n 1 77 LYS n 1 78 ASP n 1 79 GLY n 1 80 ARG n 1 81 TYR n 1 82 VAL n 1 83 LEU n 1 84 ARG n 1 85 VAL n 1 86 GLN n 1 87 LEU n 1 88 GLU n 1 89 GLU n 1 90 MET n 1 91 LEU n 1 92 LEU n 1 93 SER n 1 94 GLY n 1 95 VAL n 1 96 VAL n 1 97 ALA n 1 98 ALA n 1 99 SER n 1 100 TYR n 1 101 GLU n 1 102 VAL n 1 103 GLN n 1 104 MET n 1 105 THR n 1 106 CYS n 1 107 PRO n 1 108 ARG n 1 109 PRO n 1 110 ALA n 1 111 GLY n 1 112 TYR n 1 113 GLU n 1 114 ILE n 1 115 LEU n 1 116 ARG n 1 117 ASP n 1 118 GLU n 1 119 LYS n 1 120 VAL n 1 121 HIS n 1 122 HIS n 1 123 HIS n 1 124 HIS n 1 125 HIS n 1 126 HIS n 1 127 HIS n 1 128 HIS n 1 129 GLN n 1 130 ARG n 1 131 PRO n 1 132 ASP n 1 133 ARG n 1 134 GLY n 1 135 ASN n 1 136 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 128 Chicken ? ZP1 ? ? ? ? ? ? 'Gallus gallus' 9031 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293S CRL-3022 ? ? ? ? Plasmid ? ATUM/DNA2.0 ? pJ609 ? ? 1 2 sample 'Biological sequence' 129 136 Chicken ? ZP1 ? ? ? ? ? ? 'Gallus gallus' 9031 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293S CRL-3022 ? ? ? ? Plasmid ? ATUM/DNA2.0 ? pJ609 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP A0A140JXP0_CHICK A0A140JXP0 ? 1 ;ALLQYHYDCGDFGMQLLAYPTRGRTVHFKVLDEFGTRFEVANCSICMHWLNTGEDGGLIFSAGYEGCHVLVKDGRYVLRV QLEEMLLSGVVAASYEVNMTCPRPAGYEILRDEKVH ; 24 2 UNP A0A140JXP0_CHICK A0A140JXP0 ? 1 HQRPDRGNG 141 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6GF6 A 6 ? 121 ? A0A140JXP0 24 ? 139 ? 24 139 2 2 6GF6 A 128 ? 136 ? A0A140JXP0 141 ? 149 ? 146 154 3 1 6GF6 B 6 ? 121 ? A0A140JXP0 24 ? 139 ? 24 139 4 2 6GF6 B 128 ? 136 ? A0A140JXP0 141 ? 149 ? 146 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6GF6 ASP A 1 ? UNP A0A140JXP0 ? ? 'expression tag' 19 1 1 6GF6 ALA A 2 ? UNP A0A140JXP0 ? ? 'expression tag' 20 2 1 6GF6 ALA A 3 ? UNP A0A140JXP0 ? ? 'expression tag' 21 3 1 6GF6 GLN A 4 ? UNP A0A140JXP0 ? ? 'expression tag' 22 4 1 6GF6 PRO A 5 ? UNP A0A140JXP0 ? ? 'expression tag' 23 5 1 6GF6 GLN A 103 ? UNP A0A140JXP0 ASN 121 'engineered mutation' 121 6 1 6GF6 HIS A 122 ? UNP A0A140JXP0 ? ? 'expression tag' 140 7 1 6GF6 HIS A 123 ? UNP A0A140JXP0 ? ? 'expression tag' 141 8 1 6GF6 HIS A 124 ? UNP A0A140JXP0 ? ? 'expression tag' 142 9 1 6GF6 HIS A 125 ? UNP A0A140JXP0 ? ? 'expression tag' 143 10 1 6GF6 HIS A 126 ? UNP A0A140JXP0 ? ? 'expression tag' 144 11 1 6GF6 HIS A 127 ? UNP A0A140JXP0 ? ? 'expression tag' 145 12 2 6GF6 SER A 136 ? UNP A0A140JXP0 GLY 149 'engineered mutation' 154 13 3 6GF6 ASP B 1 ? UNP A0A140JXP0 ? ? 'expression tag' 19 14 3 6GF6 ALA B 2 ? UNP A0A140JXP0 ? ? 'expression tag' 20 15 3 6GF6 ALA B 3 ? UNP A0A140JXP0 ? ? 'expression tag' 21 16 3 6GF6 GLN B 4 ? UNP A0A140JXP0 ? ? 'expression tag' 22 17 3 6GF6 PRO B 5 ? UNP A0A140JXP0 ? ? 'expression tag' 23 18 3 6GF6 GLN B 103 ? UNP A0A140JXP0 ASN 121 'engineered mutation' 121 19 3 6GF6 HIS B 122 ? UNP A0A140JXP0 ? ? 'expression tag' 140 20 3 6GF6 HIS B 123 ? UNP A0A140JXP0 ? ? 'expression tag' 141 21 3 6GF6 HIS B 124 ? UNP A0A140JXP0 ? ? 'expression tag' 142 22 3 6GF6 HIS B 125 ? UNP A0A140JXP0 ? ? 'expression tag' 143 23 3 6GF6 HIS B 126 ? UNP A0A140JXP0 ? ? 'expression tag' 144 24 3 6GF6 HIS B 127 ? UNP A0A140JXP0 ? ? 'expression tag' 145 25 4 6GF6 SER B 136 ? UNP A0A140JXP0 GLY 149 'engineered mutation' 154 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GF6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.6 M LiCl, 0.1 M tri-sodium citrate pH 5.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-09-06 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.7710 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.7710 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 42.41 _reflns.entry_id 6GF6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 37.99 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13550 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.116 _reflns.pdbx_Rpim_I_all 0.026 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.40 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1422 _reflns_shell.percent_possible_all 84.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 8.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.498 _reflns_shell.pdbx_Rpim_I_all 0.495 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.55 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6GF6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 36.966 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13546 _refine.ls_number_reflns_R_free 1349 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.98 _refine.ls_percent_reflns_R_free 9.96 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1958 _refine.ls_R_factor_R_free 0.2292 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1922 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Partially refined model derived from SAD phasing of a gold derivative' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.93 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.26 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 36.966 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 1826 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1704 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1788 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.738 ? 2421 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 15.175 ? 1049 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.049 ? 264 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 311 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3001 2.4047 . . 137 1282 84.00 . . . 0.3191 . 0.2951 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4047 2.5315 . . 190 1480 99.00 . . . 0.2768 . 0.2471 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5315 2.6901 . . 169 1536 100.00 . . . 0.2756 . 0.2306 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6901 2.8977 . . 168 1522 100.00 . . . 0.2335 . 0.2133 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8977 3.1891 . . 158 1556 100.00 . . . 0.2561 . 0.2062 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1891 3.6503 . . 171 1552 100.00 . . . 0.2198 . 0.1858 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6503 4.5976 . . 172 1583 100.00 . . . 0.1928 . 0.1570 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.5976 36.9705 . . 184 1686 100.00 . . . 0.2197 . 0.1783 . . . . . . . . . . # _struct.entry_id 6GF6 _struct.title ;Molecular basis of egg coat filament cross-linking: high-resolution structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer ; _struct.pdbx_descriptor 'Zona pellucida sperm-binding protein 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GF6 _struct_keywords.text ;Zona pellucida, ZP1, ZP-N domain, ZP module, ZP domain, egg coat filament cross-linking, egg coat penetration by sperm, cell adhesion ; _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS A 48 ? CYS A 51 ? CYS A 66 CYS A 69 5 ? 4 HELX_P HELX_P2 AA2 GLY B 111 ? ARG B 116 ? GLY B 129 ARG B 134 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 106 SG ? ? A CYS 32 A CYS 124 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf2 disulf ? ? A CYS 48 SG ? ? ? 1_555 B CYS 48 SG ? ? A CYS 66 B CYS 66 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf3 disulf ? ? A CYS 51 SG ? ? ? 1_555 A CYS 72 SG ? ? A CYS 69 A CYS 90 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf4 disulf ? ? B CYS 14 SG ? ? ? 1_555 B CYS 106 SG ? ? B CYS 32 B CYS 124 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf5 disulf ? ? B CYS 51 SG ? ? ? 1_555 B CYS 72 SG ? ? B CYS 69 B CYS 90 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale one ? A ASN 47 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 65 A NAG 900 1_555 ? ? ? ? ? ? ? 1.425 ? N-Glycosylation covale2 covale one ? B ASN 47 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 65 B NAG 900 1_555 ? ? ? ? ? ? ? 1.427 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 CYS 106 A . ? CYS 124 A PRO 107 A ? PRO 125 A 1 -6.73 2 ARG 108 A . ? ARG 126 A PRO 109 A ? PRO 127 A 1 -1.42 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 9 ? CYS A 14 ? GLN A 27 CYS A 32 AA1 2 GLY A 18 ? TYR A 24 ? GLY A 36 TYR A 42 AA1 3 LEU A 63 ? GLY A 68 ? LEU A 81 GLY A 86 AA1 4 HIS A 53 ? THR A 57 ? HIS A 71 THR A 75 AA2 1 ARG A 42 ? GLU A 44 ? ARG A 60 GLU A 62 AA2 2 THR A 30 ? LEU A 36 ? THR A 48 LEU A 54 AA2 3 ARG A 80 ? MET A 90 ? ARG A 98 MET A 108 AA2 4 LEU A 75 ? LYS A 77 ? LEU A 93 LYS A 95 AA3 1 ARG A 42 ? GLU A 44 ? ARG A 60 GLU A 62 AA3 2 THR A 30 ? LEU A 36 ? THR A 48 LEU A 54 AA3 3 ARG A 80 ? MET A 90 ? ARG A 98 MET A 108 AA3 4 VAL A 96 ? CYS A 106 ? VAL A 114 CYS A 124 AA4 1 GLN B 9 ? CYS B 14 ? GLN B 27 CYS B 32 AA4 2 GLY B 18 ? TYR B 24 ? GLY B 36 TYR B 42 AA4 3 LEU B 63 ? GLY B 68 ? LEU B 81 GLY B 86 AA4 4 HIS B 53 ? THR B 57 ? HIS B 71 THR B 75 AA5 1 ARG B 42 ? GLU B 44 ? ARG B 60 GLU B 62 AA5 2 THR B 30 ? LEU B 36 ? THR B 48 LEU B 54 AA5 3 ARG B 80 ? MET B 90 ? ARG B 98 MET B 108 AA5 4 LEU B 75 ? VAL B 76 ? LEU B 93 VAL B 94 AA6 1 ARG B 42 ? GLU B 44 ? ARG B 60 GLU B 62 AA6 2 THR B 30 ? LEU B 36 ? THR B 48 LEU B 54 AA6 3 ARG B 80 ? MET B 90 ? ARG B 98 MET B 108 AA6 4 VAL B 96 ? PRO B 107 ? VAL B 114 PRO B 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 11 ? N HIS A 29 O LEU A 22 ? O LEU A 40 AA1 2 3 N ALA A 23 ? N ALA A 41 O LEU A 63 ? O LEU A 81 AA1 3 4 O ILE A 64 ? O ILE A 82 N ASN A 56 ? N ASN A 74 AA2 1 2 O PHE A 43 ? O PHE A 61 N VAL A 35 ? N VAL A 53 AA2 2 3 N LYS A 34 ? N LYS A 52 O GLN A 86 ? O GLN A 104 AA2 3 4 O ARG A 80 ? O ARG A 98 N LYS A 77 ? N LYS A 95 AA3 1 2 O PHE A 43 ? O PHE A 61 N VAL A 35 ? N VAL A 53 AA3 2 3 N LYS A 34 ? N LYS A 52 O GLN A 86 ? O GLN A 104 AA3 3 4 N LEU A 87 ? N LEU A 105 O TYR A 100 ? O TYR A 118 AA4 1 2 N HIS B 11 ? N HIS B 29 O LEU B 22 ? O LEU B 40 AA4 2 3 N LEU B 21 ? N LEU B 39 O PHE B 65 ? O PHE B 83 AA4 3 4 O ILE B 64 ? O ILE B 82 N ASN B 56 ? N ASN B 74 AA5 1 2 O PHE B 43 ? O PHE B 61 N VAL B 35 ? N VAL B 53 AA5 2 3 N LYS B 34 ? N LYS B 52 O GLN B 86 ? O GLN B 104 AA5 3 4 O VAL B 82 ? O VAL B 100 N LEU B 75 ? N LEU B 93 AA6 1 2 O PHE B 43 ? O PHE B 61 N VAL B 35 ? N VAL B 53 AA6 2 3 N LYS B 34 ? N LYS B 52 O GLN B 86 ? O GLN B 104 AA6 3 4 N LEU B 87 ? N LEU B 105 O TYR B 100 ? O TYR B 118 # _atom_sites.entry_id 6GF6 _atom_sites.fract_transf_matrix[1][1] 0.013161 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013161 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009815 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 19 ? ? ? A . n A 1 2 ALA 2 20 ? ? ? A . n A 1 3 ALA 3 21 ? ? ? A . n A 1 4 GLN 4 22 22 GLN GLN A . n A 1 5 PRO 5 23 23 PRO PRO A . n A 1 6 ALA 6 24 24 ALA ALA A . n A 1 7 LEU 7 25 25 LEU LEU A . n A 1 8 LEU 8 26 26 LEU LEU A . n A 1 9 GLN 9 27 27 GLN GLN A . n A 1 10 TYR 10 28 28 TYR TYR A . n A 1 11 HIS 11 29 29 HIS HIS A . n A 1 12 TYR 12 30 30 TYR TYR A . n A 1 13 ASP 13 31 31 ASP ASP A . n A 1 14 CYS 14 32 32 CYS CYS A . n A 1 15 GLY 15 33 33 GLY GLY A . n A 1 16 ASP 16 34 34 ASP ASP A . n A 1 17 PHE 17 35 35 PHE PHE A . n A 1 18 GLY 18 36 36 GLY GLY A . n A 1 19 MET 19 37 37 MET MET A . n A 1 20 GLN 20 38 38 GLN GLN A . n A 1 21 LEU 21 39 39 LEU LEU A . n A 1 22 LEU 22 40 40 LEU LEU A . n A 1 23 ALA 23 41 41 ALA ALA A . n A 1 24 TYR 24 42 42 TYR TYR A . n A 1 25 PRO 25 43 43 PRO PRO A . n A 1 26 THR 26 44 44 THR THR A . n A 1 27 ARG 27 45 45 ARG ARG A . n A 1 28 GLY 28 46 46 GLY GLY A . n A 1 29 ARG 29 47 47 ARG ARG A . n A 1 30 THR 30 48 48 THR THR A . n A 1 31 VAL 31 49 49 VAL VAL A . n A 1 32 HIS 32 50 50 HIS HIS A . n A 1 33 PHE 33 51 51 PHE PHE A . n A 1 34 LYS 34 52 52 LYS LYS A . n A 1 35 VAL 35 53 53 VAL VAL A . n A 1 36 LEU 36 54 54 LEU LEU A . n A 1 37 ASP 37 55 55 ASP ASP A . n A 1 38 GLU 38 56 56 GLU GLU A . n A 1 39 PHE 39 57 57 PHE PHE A . n A 1 40 GLY 40 58 58 GLY GLY A . n A 1 41 THR 41 59 59 THR THR A . n A 1 42 ARG 42 60 60 ARG ARG A . n A 1 43 PHE 43 61 61 PHE PHE A . n A 1 44 GLU 44 62 62 GLU GLU A . n A 1 45 VAL 45 63 63 VAL VAL A . n A 1 46 ALA 46 64 64 ALA ALA A . n A 1 47 ASN 47 65 65 ASN ASN A . n A 1 48 CYS 48 66 66 CYS CYS A . n A 1 49 SER 49 67 67 SER SER A . n A 1 50 ILE 50 68 68 ILE ILE A . n A 1 51 CYS 51 69 69 CYS CYS A . n A 1 52 MET 52 70 70 MET MET A . n A 1 53 HIS 53 71 71 HIS HIS A . n A 1 54 TRP 54 72 72 TRP TRP A . n A 1 55 LEU 55 73 73 LEU LEU A . n A 1 56 ASN 56 74 74 ASN ASN A . n A 1 57 THR 57 75 75 THR THR A . n A 1 58 GLY 58 76 76 GLY GLY A . n A 1 59 GLU 59 77 77 GLU GLU A . n A 1 60 ASP 60 78 78 ASP ASP A . n A 1 61 GLY 61 79 79 GLY GLY A . n A 1 62 GLY 62 80 80 GLY GLY A . n A 1 63 LEU 63 81 81 LEU LEU A . n A 1 64 ILE 64 82 82 ILE ILE A . n A 1 65 PHE 65 83 83 PHE PHE A . n A 1 66 SER 66 84 84 SER SER A . n A 1 67 ALA 67 85 85 ALA ALA A . n A 1 68 GLY 68 86 86 GLY GLY A . n A 1 69 TYR 69 87 87 TYR TYR A . n A 1 70 GLU 70 88 88 GLU GLU A . n A 1 71 GLY 71 89 89 GLY GLY A . n A 1 72 CYS 72 90 90 CYS CYS A . n A 1 73 HIS 73 91 91 HIS HIS A . n A 1 74 VAL 74 92 92 VAL VAL A . n A 1 75 LEU 75 93 93 LEU LEU A . n A 1 76 VAL 76 94 94 VAL VAL A . n A 1 77 LYS 77 95 95 LYS LYS A . n A 1 78 ASP 78 96 96 ASP ASP A . n A 1 79 GLY 79 97 97 GLY GLY A . n A 1 80 ARG 80 98 98 ARG ARG A . n A 1 81 TYR 81 99 99 TYR TYR A . n A 1 82 VAL 82 100 100 VAL VAL A . n A 1 83 LEU 83 101 101 LEU LEU A . n A 1 84 ARG 84 102 102 ARG ARG A . n A 1 85 VAL 85 103 103 VAL VAL A . n A 1 86 GLN 86 104 104 GLN GLN A . n A 1 87 LEU 87 105 105 LEU LEU A . n A 1 88 GLU 88 106 106 GLU GLU A . n A 1 89 GLU 89 107 107 GLU GLU A . n A 1 90 MET 90 108 108 MET MET A . n A 1 91 LEU 91 109 109 LEU LEU A . n A 1 92 LEU 92 110 110 LEU LEU A . n A 1 93 SER 93 111 111 SER SER A . n A 1 94 GLY 94 112 112 GLY GLY A . n A 1 95 VAL 95 113 113 VAL VAL A . n A 1 96 VAL 96 114 114 VAL VAL A . n A 1 97 ALA 97 115 115 ALA ALA A . n A 1 98 ALA 98 116 116 ALA ALA A . n A 1 99 SER 99 117 117 SER SER A . n A 1 100 TYR 100 118 118 TYR TYR A . n A 1 101 GLU 101 119 119 GLU GLU A . n A 1 102 VAL 102 120 120 VAL VAL A . n A 1 103 GLN 103 121 121 GLN GLN A . n A 1 104 MET 104 122 122 MET MET A . n A 1 105 THR 105 123 123 THR THR A . n A 1 106 CYS 106 124 124 CYS CYS A . n A 1 107 PRO 107 125 125 PRO PRO A . n A 1 108 ARG 108 126 126 ARG ARG A . n A 1 109 PRO 109 127 127 PRO PRO A . n A 1 110 ALA 110 128 ? ? ? A . n A 1 111 GLY 111 129 ? ? ? A . n A 1 112 TYR 112 130 ? ? ? A . n A 1 113 GLU 113 131 ? ? ? A . n A 1 114 ILE 114 132 ? ? ? A . n A 1 115 LEU 115 133 ? ? ? A . n A 1 116 ARG 116 134 ? ? ? A . n A 1 117 ASP 117 135 ? ? ? A . n A 1 118 GLU 118 136 ? ? ? A . n A 1 119 LYS 119 137 ? ? ? A . n A 1 120 VAL 120 138 ? ? ? A . n A 1 121 HIS 121 139 ? ? ? A . n A 1 122 HIS 122 140 ? ? ? A . n A 1 123 HIS 123 141 ? ? ? A . n A 1 124 HIS 124 142 ? ? ? A . n A 1 125 HIS 125 143 ? ? ? A . n A 1 126 HIS 126 144 ? ? ? A . n A 1 127 HIS 127 145 ? ? ? A . n A 1 128 HIS 128 146 ? ? ? A . n A 1 129 GLN 129 147 ? ? ? A . n A 1 130 ARG 130 148 ? ? ? A . n A 1 131 PRO 131 149 ? ? ? A . n A 1 132 ASP 132 150 ? ? ? A . n A 1 133 ARG 133 151 ? ? ? A . n A 1 134 GLY 134 152 ? ? ? A . n A 1 135 ASN 135 153 ? ? ? A . n A 1 136 SER 136 154 ? ? ? A . n B 1 1 ASP 1 19 ? ? ? B . n B 1 2 ALA 2 20 ? ? ? B . n B 1 3 ALA 3 21 ? ? ? B . n B 1 4 GLN 4 22 ? ? ? B . n B 1 5 PRO 5 23 ? ? ? B . n B 1 6 ALA 6 24 ? ? ? B . n B 1 7 LEU 7 25 25 LEU LEU B . n B 1 8 LEU 8 26 26 LEU LEU B . n B 1 9 GLN 9 27 27 GLN GLN B . n B 1 10 TYR 10 28 28 TYR TYR B . n B 1 11 HIS 11 29 29 HIS HIS B . n B 1 12 TYR 12 30 30 TYR TYR B . n B 1 13 ASP 13 31 31 ASP ASP B . n B 1 14 CYS 14 32 32 CYS CYS B . n B 1 15 GLY 15 33 33 GLY GLY B . n B 1 16 ASP 16 34 34 ASP ASP B . n B 1 17 PHE 17 35 35 PHE PHE B . n B 1 18 GLY 18 36 36 GLY GLY B . n B 1 19 MET 19 37 37 MET MET B . n B 1 20 GLN 20 38 38 GLN GLN B . n B 1 21 LEU 21 39 39 LEU LEU B . n B 1 22 LEU 22 40 40 LEU LEU B . n B 1 23 ALA 23 41 41 ALA ALA B . n B 1 24 TYR 24 42 42 TYR TYR B . n B 1 25 PRO 25 43 43 PRO PRO B . n B 1 26 THR 26 44 44 THR THR B . n B 1 27 ARG 27 45 45 ARG ARG B . n B 1 28 GLY 28 46 46 GLY GLY B . n B 1 29 ARG 29 47 47 ARG ARG B . n B 1 30 THR 30 48 48 THR THR B . n B 1 31 VAL 31 49 49 VAL VAL B . n B 1 32 HIS 32 50 50 HIS HIS B . n B 1 33 PHE 33 51 51 PHE PHE B . n B 1 34 LYS 34 52 52 LYS LYS B . n B 1 35 VAL 35 53 53 VAL VAL B . n B 1 36 LEU 36 54 54 LEU LEU B . n B 1 37 ASP 37 55 55 ASP ASP B . n B 1 38 GLU 38 56 56 GLU GLU B . n B 1 39 PHE 39 57 57 PHE PHE B . n B 1 40 GLY 40 58 58 GLY GLY B . n B 1 41 THR 41 59 59 THR THR B . n B 1 42 ARG 42 60 60 ARG ARG B . n B 1 43 PHE 43 61 61 PHE PHE B . n B 1 44 GLU 44 62 62 GLU GLU B . n B 1 45 VAL 45 63 63 VAL VAL B . n B 1 46 ALA 46 64 64 ALA ALA B . n B 1 47 ASN 47 65 65 ASN ASN B . n B 1 48 CYS 48 66 66 CYS CYS B . n B 1 49 SER 49 67 67 SER SER B . n B 1 50 ILE 50 68 68 ILE ILE B . n B 1 51 CYS 51 69 69 CYS CYS B . n B 1 52 MET 52 70 70 MET MET B . n B 1 53 HIS 53 71 71 HIS HIS B . n B 1 54 TRP 54 72 72 TRP TRP B . n B 1 55 LEU 55 73 73 LEU LEU B . n B 1 56 ASN 56 74 74 ASN ASN B . n B 1 57 THR 57 75 75 THR THR B . n B 1 58 GLY 58 76 76 GLY GLY B . n B 1 59 GLU 59 77 77 GLU GLU B . n B 1 60 ASP 60 78 78 ASP ASP B . n B 1 61 GLY 61 79 79 GLY GLY B . n B 1 62 GLY 62 80 80 GLY GLY B . n B 1 63 LEU 63 81 81 LEU LEU B . n B 1 64 ILE 64 82 82 ILE ILE B . n B 1 65 PHE 65 83 83 PHE PHE B . n B 1 66 SER 66 84 84 SER SER B . n B 1 67 ALA 67 85 85 ALA ALA B . n B 1 68 GLY 68 86 86 GLY GLY B . n B 1 69 TYR 69 87 87 TYR TYR B . n B 1 70 GLU 70 88 88 GLU GLU B . n B 1 71 GLY 71 89 89 GLY GLY B . n B 1 72 CYS 72 90 90 CYS CYS B . n B 1 73 HIS 73 91 91 HIS HIS B . n B 1 74 VAL 74 92 92 VAL VAL B . n B 1 75 LEU 75 93 93 LEU LEU B . n B 1 76 VAL 76 94 94 VAL VAL B . n B 1 77 LYS 77 95 95 LYS LYS B . n B 1 78 ASP 78 96 96 ASP ASP B . n B 1 79 GLY 79 97 97 GLY GLY B . n B 1 80 ARG 80 98 98 ARG ARG B . n B 1 81 TYR 81 99 99 TYR TYR B . n B 1 82 VAL 82 100 100 VAL VAL B . n B 1 83 LEU 83 101 101 LEU LEU B . n B 1 84 ARG 84 102 102 ARG ARG B . n B 1 85 VAL 85 103 103 VAL VAL B . n B 1 86 GLN 86 104 104 GLN GLN B . n B 1 87 LEU 87 105 105 LEU LEU B . n B 1 88 GLU 88 106 106 GLU GLU B . n B 1 89 GLU 89 107 107 GLU GLU B . n B 1 90 MET 90 108 108 MET MET B . n B 1 91 LEU 91 109 109 LEU LEU B . n B 1 92 LEU 92 110 110 LEU LEU B . n B 1 93 SER 93 111 111 SER SER B . n B 1 94 GLY 94 112 112 GLY GLY B . n B 1 95 VAL 95 113 113 VAL VAL B . n B 1 96 VAL 96 114 114 VAL VAL B . n B 1 97 ALA 97 115 115 ALA ALA B . n B 1 98 ALA 98 116 116 ALA ALA B . n B 1 99 SER 99 117 117 SER SER B . n B 1 100 TYR 100 118 118 TYR TYR B . n B 1 101 GLU 101 119 119 GLU GLU B . n B 1 102 VAL 102 120 120 VAL VAL B . n B 1 103 GLN 103 121 121 GLN GLN B . n B 1 104 MET 104 122 122 MET MET B . n B 1 105 THR 105 123 123 THR THR B . n B 1 106 CYS 106 124 124 CYS CYS B . n B 1 107 PRO 107 125 125 PRO PRO B . n B 1 108 ARG 108 126 126 ARG ARG B . n B 1 109 PRO 109 127 127 PRO PRO B . n B 1 110 ALA 110 128 128 ALA ALA B . n B 1 111 GLY 111 129 129 GLY GLY B . n B 1 112 TYR 112 130 130 TYR TYR B . n B 1 113 GLU 113 131 131 GLU GLU B . n B 1 114 ILE 114 132 132 ILE ILE B . n B 1 115 LEU 115 133 133 LEU LEU B . n B 1 116 ARG 116 134 134 ARG ARG B . n B 1 117 ASP 117 135 ? ? ? B . n B 1 118 GLU 118 136 ? ? ? B . n B 1 119 LYS 119 137 ? ? ? B . n B 1 120 VAL 120 138 ? ? ? B . n B 1 121 HIS 121 139 ? ? ? B . n B 1 122 HIS 122 140 ? ? ? B . n B 1 123 HIS 123 141 ? ? ? B . n B 1 124 HIS 124 142 ? ? ? B . n B 1 125 HIS 125 143 ? ? ? B . n B 1 126 HIS 126 144 ? ? ? B . n B 1 127 HIS 127 145 ? ? ? B . n B 1 128 HIS 128 146 ? ? ? B . n B 1 129 GLN 129 147 ? ? ? B . n B 1 130 ARG 130 148 ? ? ? B . n B 1 131 PRO 131 149 ? ? ? B . n B 1 132 ASP 132 150 ? ? ? B . n B 1 133 ARG 133 151 ? ? ? B . n B 1 134 GLY 134 152 ? ? ? B . n B 1 135 ASN 135 153 ? ? ? B . n B 1 136 SER 136 154 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG 1 900 900 NAG NAG A . D 3 GOL 1 901 901 GOL GOL A . E 2 NAG 1 900 900 NAG NAG B . F 4 HOH 1 1001 25 HOH HOH A . F 4 HOH 2 1002 38 HOH HOH A . F 4 HOH 3 1003 19 HOH HOH A . F 4 HOH 4 1004 4 HOH HOH A . F 4 HOH 5 1005 3 HOH HOH A . F 4 HOH 6 1006 2 HOH HOH A . F 4 HOH 7 1007 17 HOH HOH A . F 4 HOH 8 1008 24 HOH HOH A . F 4 HOH 9 1009 30 HOH HOH A . F 4 HOH 10 1010 58 HOH HOH A . F 4 HOH 11 1011 40 HOH HOH A . F 4 HOH 12 1012 26 HOH HOH A . F 4 HOH 13 1013 20 HOH HOH A . F 4 HOH 14 1014 48 HOH HOH A . F 4 HOH 15 1015 44 HOH HOH A . F 4 HOH 16 1016 10 HOH HOH A . F 4 HOH 17 1017 69 HOH HOH A . F 4 HOH 18 1018 28 HOH HOH A . F 4 HOH 19 1019 23 HOH HOH A . F 4 HOH 20 1020 76 HOH HOH A . F 4 HOH 21 1021 87 HOH HOH A . F 4 HOH 22 1022 79 HOH HOH A . F 4 HOH 23 1023 47 HOH HOH A . F 4 HOH 24 1024 42 HOH HOH A . F 4 HOH 25 1025 34 HOH HOH A . F 4 HOH 26 1026 64 HOH HOH A . F 4 HOH 27 1027 27 HOH HOH A . F 4 HOH 28 1028 32 HOH HOH A . F 4 HOH 29 1029 14 HOH HOH A . F 4 HOH 30 1030 9 HOH HOH A . F 4 HOH 31 1031 22 HOH HOH A . F 4 HOH 32 1032 62 HOH HOH A . F 4 HOH 33 1033 12 HOH HOH A . F 4 HOH 34 1034 55 HOH HOH A . F 4 HOH 35 1035 15 HOH HOH A . F 4 HOH 36 1036 37 HOH HOH A . F 4 HOH 37 1037 61 HOH HOH A . F 4 HOH 38 1038 54 HOH HOH A . F 4 HOH 39 1039 71 HOH HOH A . F 4 HOH 40 1040 33 HOH HOH A . F 4 HOH 41 1041 11 HOH HOH A . F 4 HOH 42 1042 70 HOH HOH A . F 4 HOH 43 1043 67 HOH HOH A . F 4 HOH 44 1044 66 HOH HOH A . F 4 HOH 45 1045 52 HOH HOH A . F 4 HOH 46 1046 1 HOH HOH A . F 4 HOH 47 1047 46 HOH HOH A . F 4 HOH 48 1048 49 HOH HOH A . F 4 HOH 49 1049 45 HOH HOH A . F 4 HOH 50 1050 65 HOH HOH A . F 4 HOH 51 1051 88 HOH HOH A . F 4 HOH 52 1052 81 HOH HOH A . F 4 HOH 53 1053 80 HOH HOH A . F 4 HOH 54 1054 29 HOH HOH A . G 4 HOH 1 1001 36 HOH HOH B . G 4 HOH 2 1002 63 HOH HOH B . G 4 HOH 3 1003 50 HOH HOH B . G 4 HOH 4 1004 21 HOH HOH B . G 4 HOH 5 1005 8 HOH HOH B . G 4 HOH 6 1006 82 HOH HOH B . G 4 HOH 7 1007 68 HOH HOH B . G 4 HOH 8 1008 7 HOH HOH B . G 4 HOH 9 1009 31 HOH HOH B . G 4 HOH 10 1010 35 HOH HOH B . G 4 HOH 11 1011 41 HOH HOH B . G 4 HOH 12 1012 53 HOH HOH B . G 4 HOH 13 1013 6 HOH HOH B . G 4 HOH 14 1014 75 HOH HOH B . G 4 HOH 15 1015 16 HOH HOH B . G 4 HOH 16 1016 13 HOH HOH B . G 4 HOH 17 1017 18 HOH HOH B . G 4 HOH 18 1018 39 HOH HOH B . G 4 HOH 19 1019 60 HOH HOH B . G 4 HOH 20 1020 51 HOH HOH B . G 4 HOH 21 1021 78 HOH HOH B . G 4 HOH 22 1022 74 HOH HOH B . G 4 HOH 23 1023 5 HOH HOH B . G 4 HOH 24 1024 43 HOH HOH B . G 4 HOH 25 1025 84 HOH HOH B . G 4 HOH 26 1026 72 HOH HOH B . G 4 HOH 27 1027 85 HOH HOH B . G 4 HOH 28 1028 57 HOH HOH B . G 4 HOH 29 1029 86 HOH HOH B . G 4 HOH 30 1030 73 HOH HOH B . G 4 HOH 31 1031 77 HOH HOH B . G 4 HOH 32 1032 56 HOH HOH B . G 4 HOH 33 1033 59 HOH HOH B . G 4 HOH 34 1034 83 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2240 ? 1 MORE -7 ? 1 'SSA (A^2)' 12340 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-19 2 'Structure model' 1 1 2019-07-17 3 'Structure model' 1 2 2019-07-24 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' refine 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site 10 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.year' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' 9 3 'Structure model' '_citation.page_last' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 4 'Structure model' '_chem_comp.name' 13 4 'Structure model' '_chem_comp.type' 14 4 'Structure model' '_entity.pdbx_description' 15 4 'Structure model' '_pdbx_entity_nonpoly.name' 16 4 'Structure model' '_refine.pdbx_diffrn_id' 17 4 'Structure model' '_struct_conn.pdbx_role' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -17.9024 -26.6692 14.7079 0.3934 ? 0.0115 ? 0.0193 ? 0.2350 ? 0.0242 ? 0.3200 ? 2.1942 ? -0.5556 ? -0.2634 ? 2.8085 ? 0.4639 ? 1.5790 ? 0.0297 ? 0.0890 ? 0.0250 ? 0.0071 ? -0.0096 ? 0.2003 ? -0.0749 ? -0.2267 ? 0.0005 ? 2 'X-RAY DIFFRACTION' ? refined 7.5554 -32.6432 12.5431 0.3727 ? -0.0283 ? 0.0046 ? 0.4645 ? 0.0048 ? 0.3370 ? 3.9714 ? 0.8263 ? -1.1528 ? 0.4476 ? -1.0456 ? 3.8871 ? 0.0342 ? -0.1750 ? 0.0994 ? 0.2373 ? -0.1237 ? 0.0724 ? -0.1396 ? 0.6130 ? 0.0001 ? 3 'X-RAY DIFFRACTION' ? refined -1.6188 -60.1285 26.5105 1.2676 ? -0.0160 ? 0.1026 ? 0.7493 ? -0.1762 ? 0.9009 ? 0.0166 ? 0.0189 ? 0.0006 ? 0.0275 ? -0.0009 ? -0.0007 ? 0.1422 ? 0.3482 ? -0.5717 ? -0.0105 ? 0.1908 ? 0.3839 ? 0.2680 ? 0.0323 ? 0.0000 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? 'chain A and (resi 22:127 or resi 900)' 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? 'chain B and (resi 25:127 or resi 900)' 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? 'chain B and (resi 128:134)' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_3409: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 45 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -38.56 _pdbx_validate_torsion.psi 120.41 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 19 ? A ASP 1 2 1 Y 1 A ALA 20 ? A ALA 2 3 1 Y 1 A ALA 21 ? A ALA 3 4 1 Y 1 A ALA 128 ? A ALA 110 5 1 Y 1 A GLY 129 ? A GLY 111 6 1 Y 1 A TYR 130 ? A TYR 112 7 1 Y 1 A GLU 131 ? A GLU 113 8 1 Y 1 A ILE 132 ? A ILE 114 9 1 Y 1 A LEU 133 ? A LEU 115 10 1 Y 1 A ARG 134 ? A ARG 116 11 1 Y 1 A ASP 135 ? A ASP 117 12 1 Y 1 A GLU 136 ? A GLU 118 13 1 Y 1 A LYS 137 ? A LYS 119 14 1 Y 1 A VAL 138 ? A VAL 120 15 1 Y 1 A HIS 139 ? A HIS 121 16 1 Y 1 A HIS 140 ? A HIS 122 17 1 Y 1 A HIS 141 ? A HIS 123 18 1 Y 1 A HIS 142 ? A HIS 124 19 1 Y 1 A HIS 143 ? A HIS 125 20 1 Y 1 A HIS 144 ? A HIS 126 21 1 Y 1 A HIS 145 ? A HIS 127 22 1 Y 1 A HIS 146 ? A HIS 128 23 1 Y 1 A GLN 147 ? A GLN 129 24 1 Y 1 A ARG 148 ? A ARG 130 25 1 Y 1 A PRO 149 ? A PRO 131 26 1 Y 1 A ASP 150 ? A ASP 132 27 1 Y 1 A ARG 151 ? A ARG 133 28 1 Y 1 A GLY 152 ? A GLY 134 29 1 Y 1 A ASN 153 ? A ASN 135 30 1 Y 1 A SER 154 ? A SER 136 31 1 Y 1 B ASP 19 ? B ASP 1 32 1 Y 1 B ALA 20 ? B ALA 2 33 1 Y 1 B ALA 21 ? B ALA 3 34 1 Y 1 B GLN 22 ? B GLN 4 35 1 Y 1 B PRO 23 ? B PRO 5 36 1 Y 1 B ALA 24 ? B ALA 6 37 1 Y 1 B ASP 135 ? B ASP 117 38 1 Y 1 B GLU 136 ? B GLU 118 39 1 Y 1 B LYS 137 ? B LYS 119 40 1 Y 1 B VAL 138 ? B VAL 120 41 1 Y 1 B HIS 139 ? B HIS 121 42 1 Y 1 B HIS 140 ? B HIS 122 43 1 Y 1 B HIS 141 ? B HIS 123 44 1 Y 1 B HIS 142 ? B HIS 124 45 1 Y 1 B HIS 143 ? B HIS 125 46 1 Y 1 B HIS 144 ? B HIS 126 47 1 Y 1 B HIS 145 ? B HIS 127 48 1 Y 1 B HIS 146 ? B HIS 128 49 1 Y 1 B GLN 147 ? B GLN 129 50 1 Y 1 B ARG 148 ? B ARG 130 51 1 Y 1 B PRO 149 ? B PRO 131 52 1 Y 1 B ASP 150 ? B ASP 132 53 1 Y 1 B ARG 151 ? B ARG 133 54 1 Y 1 B GLY 152 ? B GLY 134 55 1 Y 1 B ASN 153 ? B ASN 135 56 1 Y 1 B SER 154 ? B SER 136 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Swedish Research Council' Sweden 2012-5093 1 'Swedish Research Council' Sweden 2016-03999 2 'European Molecular Biology Organization' ? 'EMBO Young Investigator Programme' 3 'European Research Council' ? 'ERC 260759' 4 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 GLYCEROL GOL 4 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 cross-linking 'Dimer in non-reducing SDS-PAGE' 2 1 'gel filtration' ? #