HEADER CELL ADHESION 29-APR-18 6GF6 TITLE MOLECULAR BASIS OF EGG COAT FILAMENT CROSS-LINKING: HIGH-RESOLUTION TITLE 2 STRUCTURE OF THE PARTIALLY DEGLYCOSYLATED ZP1 ZP-N1 DOMAIN HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZONA PELLUCIDA SPERM-BINDING PROTEIN 1,ZONA PELLUCIDA COMPND 3 SPERM-BINDING PROTEIN 1; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: ZP1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S; SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PJ609 KEYWDS ZONA PELLUCIDA, ZP1, ZP-N DOMAIN, ZP MODULE, ZP DOMAIN, EGG COAT KEYWDS 2 FILAMENT CROSS-LINKING, EGG COAT PENETRATION BY SPERM, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.NISHIMURA,L.JOVINE REVDAT 6 09-OCT-24 6GF6 1 REMARK REVDAT 5 01-MAY-24 6GF6 1 HETSYN REVDAT 4 29-JUL-20 6GF6 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 24-JUL-19 6GF6 1 JRNL REVDAT 2 17-JUL-19 6GF6 1 JRNL REVDAT 1 19-JUN-19 6GF6 0 JRNL AUTH K.NISHIMURA,E.DIOGUARDI,S.NISHIO,A.VILLA,L.HAN,T.MATSUDA, JRNL AUTH 2 L.JOVINE JRNL TITL MOLECULAR BASIS OF EGG COAT CROSS-LINKING SHEDS LIGHT ON JRNL TITL 2 ZP1-ASSOCIATED FEMALE INFERTILITY. JRNL REF NAT COMMUN V. 10 3086 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31300655 JRNL DOI 10.1038/S41467-019-10931-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.GREVE,P.M.WASSARMAN REMARK 1 TITL MOUSE EGG EXTRACELLULAR COAT IS A MATRIX OF INTERCONNECTED REMARK 1 TITL 2 FILAMENTS POSSESSING A STRUCTURAL REPEAT. REMARK 1 REF J. MOL. BIOL. V. 181 253 1985 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 3845123 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.RANKIN,P.TALBOT,E.LEE,J.DEAN REMARK 1 TITL ABNORMAL ZONAE PELLUCIDAE IN MICE LACKING ZP1 RESULT IN REMARK 1 TITL 2 EARLY EMBRYONIC LOSS. REMARK 1 REF DEVELOPMENT V. 126 3847 1999 REMARK 1 REFN ISSN 0950-1991 REMARK 1 PMID 10433913 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.TAKEUCHI,R.CHO,Y.IWATA,K.NISHIMURA,T.KATO,N.AOKI, REMARK 1 AUTH 2 K.KITAJIMA,T.MATSUDA REMARK 1 TITL MORPHOLOGICAL AND BIOCHEMICAL CHANGES OF ISOLATED CHICKEN REMARK 1 TITL 2 EGG-ENVELOPE DURING SPERM PENETRATION: DEGRADATION OF THE REMARK 1 TITL 3 97-KILODALTON GLYCOPROTEIN IS INVOLVED IN SPERM-DRIVEN HOLE REMARK 1 TITL 4 FORMATION ON THE EGG-ENVELOPE. REMARK 1 REF BIOL. REPROD. V. 64 822 2001 REMARK 1 REFN ISSN 0006-3363 REMARK 1 PMID 11207197 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.OKUMURA,Y.KOHNO,Y.IWATA,H.MORI,N.AOKI,C.SATO,K.KITAJIMA, REMARK 1 AUTH 2 D.NADANO,T.MATSUDA REMARK 1 TITL A NEWLY IDENTIFIED ZONA PELLUCIDA GLYCOPROTEIN, ZPD, AND REMARK 1 TITL 2 DIMERIC ZP1 OF CHICKEN EGG ENVELOPE ARE INVOLVED IN SPERM REMARK 1 TITL 3 ACTIVATION ON SPERM-EGG INTERACTION. REMARK 1 REF BIOCHEM. J. V. 384 191 2004 REMARK 1 REFN ESSN 1470-8728 REMARK 1 PMID 15264999 REMARK 1 DOI 10.1042/BJ20040299 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.L.HUANG,C.LV,Y.C.ZHAO,W.LI,X.M.HE,P.LI,A.G.SHA,X.TIAN, REMARK 1 AUTH 2 C.J.PAPASIAN,H.W.DENG,G.X.LU,H.M.XIAO REMARK 1 TITL MUTANT ZP1 IN FAMILIAL INFERTILITY. REMARK 1 REF N. ENGL. J. MED. V. 370 1220 2014 REMARK 1 REFN ESSN 1533-4406 REMARK 1 PMID 24670168 REMARK 1 DOI 10.1056/NEJMOA1308851 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.OKUMURA,T.SATO,R.SAKUMA,H.FUKUSHIMA,T.MATSUDA,M.UJITA REMARK 1 TITL IDENTIFICATION OF DISTINCTIVE INTERDOMAIN INTERACTIONS AMONG REMARK 1 TITL 2 ZP-N, ZP-C AND OTHER DOMAINS OF ZONA PELLUCIDA GLYCOPROTEINS REMARK 1 TITL 3 UNDERLYING ASSOCIATION OF CHICKEN EGG-COAT MATRIX. REMARK 1 REF FEBS OPEN BIO V. 5 454 2015 REMARK 1 REFN ESSN 2211-5463 REMARK 1 PMID 26106520 REMARK 1 DOI 10.1016/J.FOB.2015.05.005 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3409: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 13546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9705 - 4.5976 1.00 1686 184 0.1783 0.2197 REMARK 3 2 4.5976 - 3.6503 1.00 1583 172 0.1570 0.1928 REMARK 3 3 3.6503 - 3.1891 1.00 1552 171 0.1858 0.2198 REMARK 3 4 3.1891 - 2.8977 1.00 1556 158 0.2062 0.2561 REMARK 3 5 2.8977 - 2.6901 1.00 1522 168 0.2133 0.2335 REMARK 3 6 2.6901 - 2.5315 1.00 1536 169 0.2306 0.2756 REMARK 3 7 2.5315 - 2.4047 0.99 1480 190 0.2471 0.2768 REMARK 3 8 2.4047 - 2.3001 0.84 1282 137 0.2951 0.3191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1788 REMARK 3 ANGLE : 0.738 2421 REMARK 3 CHIRALITY : 0.049 264 REMARK 3 PLANARITY : 0.005 311 REMARK 3 DIHEDRAL : 15.175 1049 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESI 22:127 OR RESI 900) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9024 -26.6692 14.7079 REMARK 3 T TENSOR REMARK 3 T11: 0.3934 T22: 0.2350 REMARK 3 T33: 0.3200 T12: 0.0115 REMARK 3 T13: 0.0193 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.1942 L22: 2.8085 REMARK 3 L33: 1.5790 L12: -0.5556 REMARK 3 L13: -0.2634 L23: 0.4639 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.0890 S13: 0.0250 REMARK 3 S21: 0.0071 S22: -0.0096 S23: 0.2003 REMARK 3 S31: -0.0749 S32: -0.2267 S33: 0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESI 25:127 OR RESI 900) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5554 -32.6432 12.5431 REMARK 3 T TENSOR REMARK 3 T11: 0.3727 T22: 0.4645 REMARK 3 T33: 0.3370 T12: -0.0283 REMARK 3 T13: 0.0046 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 3.9714 L22: 0.4476 REMARK 3 L33: 3.8871 L12: 0.8263 REMARK 3 L13: -1.1528 L23: -1.0456 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: -0.1750 S13: 0.0994 REMARK 3 S21: 0.2373 S22: -0.1237 S23: 0.0724 REMARK 3 S31: -0.1396 S32: 0.6130 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESI 128:134) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6188 -60.1285 26.5105 REMARK 3 T TENSOR REMARK 3 T11: 1.2676 T22: 0.7493 REMARK 3 T33: 0.9009 T12: -0.0160 REMARK 3 T13: 0.1026 T23: -0.1762 REMARK 3 L TENSOR REMARK 3 L11: 0.0166 L22: 0.0275 REMARK 3 L33: -0.0007 L12: 0.0189 REMARK 3 L13: 0.0006 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.1422 S12: 0.3482 S13: -0.5717 REMARK 3 S21: -0.0105 S22: 0.1908 S23: 0.3839 REMARK 3 S31: 0.2680 S32: 0.0323 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7710 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 37.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PARTIALLY REFINED MODEL DERIVED FROM SAD PHASING REMARK 200 OF A GOLD DERIVATIVE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M LICL, 0.1 M TRI-SODIUM CITRATE REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.94000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.99000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.47000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.99000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.41000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.99000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.99000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.47000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.99000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.99000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.41000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 128 REMARK 465 GLY A 129 REMARK 465 TYR A 130 REMARK 465 GLU A 131 REMARK 465 ILE A 132 REMARK 465 LEU A 133 REMARK 465 ARG A 134 REMARK 465 ASP A 135 REMARK 465 GLU A 136 REMARK 465 LYS A 137 REMARK 465 VAL A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 GLN A 147 REMARK 465 ARG A 148 REMARK 465 PRO A 149 REMARK 465 ASP A 150 REMARK 465 ARG A 151 REMARK 465 GLY A 152 REMARK 465 ASN A 153 REMARK 465 SER A 154 REMARK 465 ASP B 19 REMARK 465 ALA B 20 REMARK 465 ALA B 21 REMARK 465 GLN B 22 REMARK 465 PRO B 23 REMARK 465 ALA B 24 REMARK 465 ASP B 135 REMARK 465 GLU B 136 REMARK 465 LYS B 137 REMARK 465 VAL B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 GLN B 147 REMARK 465 ARG B 148 REMARK 465 PRO B 149 REMARK 465 ASP B 150 REMARK 465 ARG B 151 REMARK 465 GLY B 152 REMARK 465 ASN B 153 REMARK 465 SER B 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 45 120.41 -38.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GF7 RELATED DB: PDB REMARK 900 ZN DERIVATIVE REMARK 900 RELATED ID: 6GF8 RELATED DB: PDB REMARK 900 ORTHORHOMBIC CRYSTAL FORM OF THE SAME PROTEIN, FULLY GLYCOSYLATED DBREF1 6GF6 A 24 139 UNP A0A140JXP0_CHICK DBREF2 6GF6 A A0A140JXP0 24 139 DBREF1 6GF6 A 146 154 UNP A0A140JXP0_CHICK DBREF2 6GF6 A A0A140JXP0 141 149 DBREF1 6GF6 B 24 139 UNP A0A140JXP0_CHICK DBREF2 6GF6 B A0A140JXP0 24 139 DBREF1 6GF6 B 146 154 UNP A0A140JXP0_CHICK DBREF2 6GF6 B A0A140JXP0 141 149 SEQADV 6GF6 ASP A 19 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 ALA A 20 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 ALA A 21 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 GLN A 22 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 PRO A 23 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 GLN A 121 UNP A0A140JXP ASN 121 ENGINEERED MUTATION SEQADV 6GF6 HIS A 140 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS A 141 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS A 142 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS A 143 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS A 144 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS A 145 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 SER A 154 UNP A0A140JXP GLY 149 ENGINEERED MUTATION SEQADV 6GF6 ASP B 19 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 ALA B 20 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 ALA B 21 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 GLN B 22 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 PRO B 23 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 GLN B 121 UNP A0A140JXP ASN 121 ENGINEERED MUTATION SEQADV 6GF6 HIS B 140 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS B 141 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS B 142 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS B 143 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS B 144 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 HIS B 145 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF6 SER B 154 UNP A0A140JXP GLY 149 ENGINEERED MUTATION SEQRES 1 A 136 ASP ALA ALA GLN PRO ALA LEU LEU GLN TYR HIS TYR ASP SEQRES 2 A 136 CYS GLY ASP PHE GLY MET GLN LEU LEU ALA TYR PRO THR SEQRES 3 A 136 ARG GLY ARG THR VAL HIS PHE LYS VAL LEU ASP GLU PHE SEQRES 4 A 136 GLY THR ARG PHE GLU VAL ALA ASN CYS SER ILE CYS MET SEQRES 5 A 136 HIS TRP LEU ASN THR GLY GLU ASP GLY GLY LEU ILE PHE SEQRES 6 A 136 SER ALA GLY TYR GLU GLY CYS HIS VAL LEU VAL LYS ASP SEQRES 7 A 136 GLY ARG TYR VAL LEU ARG VAL GLN LEU GLU GLU MET LEU SEQRES 8 A 136 LEU SER GLY VAL VAL ALA ALA SER TYR GLU VAL GLN MET SEQRES 9 A 136 THR CYS PRO ARG PRO ALA GLY TYR GLU ILE LEU ARG ASP SEQRES 10 A 136 GLU LYS VAL HIS HIS HIS HIS HIS HIS HIS HIS GLN ARG SEQRES 11 A 136 PRO ASP ARG GLY ASN SER SEQRES 1 B 136 ASP ALA ALA GLN PRO ALA LEU LEU GLN TYR HIS TYR ASP SEQRES 2 B 136 CYS GLY ASP PHE GLY MET GLN LEU LEU ALA TYR PRO THR SEQRES 3 B 136 ARG GLY ARG THR VAL HIS PHE LYS VAL LEU ASP GLU PHE SEQRES 4 B 136 GLY THR ARG PHE GLU VAL ALA ASN CYS SER ILE CYS MET SEQRES 5 B 136 HIS TRP LEU ASN THR GLY GLU ASP GLY GLY LEU ILE PHE SEQRES 6 B 136 SER ALA GLY TYR GLU GLY CYS HIS VAL LEU VAL LYS ASP SEQRES 7 B 136 GLY ARG TYR VAL LEU ARG VAL GLN LEU GLU GLU MET LEU SEQRES 8 B 136 LEU SER GLY VAL VAL ALA ALA SER TYR GLU VAL GLN MET SEQRES 9 B 136 THR CYS PRO ARG PRO ALA GLY TYR GLU ILE LEU ARG ASP SEQRES 10 B 136 GLU LYS VAL HIS HIS HIS HIS HIS HIS HIS HIS GLN ARG SEQRES 11 B 136 PRO ASP ARG GLY ASN SER HET NAG A 900 14 HET GOL A 901 6 HET NAG B 900 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *88(H2 O) HELIX 1 AA1 CYS A 66 CYS A 69 5 4 HELIX 2 AA2 GLY B 129 ARG B 134 5 6 SHEET 1 AA1 4 GLN A 27 CYS A 32 0 SHEET 2 AA1 4 GLY A 36 TYR A 42 -1 O LEU A 40 N HIS A 29 SHEET 3 AA1 4 LEU A 81 GLY A 86 -1 O LEU A 81 N ALA A 41 SHEET 4 AA1 4 HIS A 71 THR A 75 -1 N ASN A 74 O ILE A 82 SHEET 1 AA2 4 ARG A 60 GLU A 62 0 SHEET 2 AA2 4 THR A 48 LEU A 54 -1 N VAL A 53 O PHE A 61 SHEET 3 AA2 4 ARG A 98 MET A 108 -1 O GLN A 104 N LYS A 52 SHEET 4 AA2 4 LEU A 93 LYS A 95 -1 N LYS A 95 O ARG A 98 SHEET 1 AA3 4 ARG A 60 GLU A 62 0 SHEET 2 AA3 4 THR A 48 LEU A 54 -1 N VAL A 53 O PHE A 61 SHEET 3 AA3 4 ARG A 98 MET A 108 -1 O GLN A 104 N LYS A 52 SHEET 4 AA3 4 VAL A 114 CYS A 124 -1 O TYR A 118 N LEU A 105 SHEET 1 AA4 4 GLN B 27 CYS B 32 0 SHEET 2 AA4 4 GLY B 36 TYR B 42 -1 O LEU B 40 N HIS B 29 SHEET 3 AA4 4 LEU B 81 GLY B 86 -1 O PHE B 83 N LEU B 39 SHEET 4 AA4 4 HIS B 71 THR B 75 -1 N ASN B 74 O ILE B 82 SHEET 1 AA5 4 ARG B 60 GLU B 62 0 SHEET 2 AA5 4 THR B 48 LEU B 54 -1 N VAL B 53 O PHE B 61 SHEET 3 AA5 4 ARG B 98 MET B 108 -1 O GLN B 104 N LYS B 52 SHEET 4 AA5 4 LEU B 93 VAL B 94 -1 N LEU B 93 O VAL B 100 SHEET 1 AA6 4 ARG B 60 GLU B 62 0 SHEET 2 AA6 4 THR B 48 LEU B 54 -1 N VAL B 53 O PHE B 61 SHEET 3 AA6 4 ARG B 98 MET B 108 -1 O GLN B 104 N LYS B 52 SHEET 4 AA6 4 VAL B 114 PRO B 125 -1 O TYR B 118 N LEU B 105 SSBOND 1 CYS A 32 CYS A 124 1555 1555 2.05 SSBOND 2 CYS A 66 CYS B 66 1555 1555 2.04 SSBOND 3 CYS A 69 CYS A 90 1555 1555 2.05 SSBOND 4 CYS B 32 CYS B 124 1555 1555 2.04 SSBOND 5 CYS B 69 CYS B 90 1555 1555 2.03 LINK ND2 ASN A 65 C1 NAG A 900 1555 1555 1.43 LINK ND2 ASN B 65 C1 NAG B 900 1555 1555 1.43 CISPEP 1 CYS A 124 PRO A 125 0 -6.73 CISPEP 2 ARG A 126 PRO A 127 0 -1.42 CRYST1 75.980 75.980 101.880 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009815 0.00000