HEADER CELL ADHESION 29-APR-18 6GF8 TITLE MOLECULAR BASIS OF EGG COAT FILAMENT CROSS-LINKING: STRUCTURE OF THE TITLE 2 GLYCOSYLATED ZP1 ZP-N1 DOMAIN HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZONA PELLUCIDA SPERM-BINDING PROTEIN 1,ZONA PELLUCIDA COMPND 3 SPERM-BINDING PROTEIN 1; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: ZP1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PJ609 KEYWDS ZONA PELLUCIDA, ZP1, ZP-N DOMAIN, ZP MODULE, ZP DOMAIN, EGG COAT KEYWDS 2 FILAMENT CROSS-LINKING, EGG COAT PENETRATION BY SPERM, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.NISHIMURA,L.JOVINE REVDAT 6 17-JAN-24 6GF8 1 REMARK REVDAT 5 20-OCT-21 6GF8 1 SOURCE REMARK HETSYN LINK REVDAT 4 29-JUL-20 6GF8 1 COMPND REMARK HETNAM SSBOND REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 24-JUL-19 6GF8 1 JRNL REVDAT 2 17-JUL-19 6GF8 1 JRNL REVDAT 1 19-JUN-19 6GF8 0 JRNL AUTH K.NISHIMURA,E.DIOGUARDI,S.NISHIO,A.VILLA,L.HAN,T.MATSUDA, JRNL AUTH 2 L.JOVINE JRNL TITL MOLECULAR BASIS OF EGG COAT CROSS-LINKING SHEDS LIGHT ON JRNL TITL 2 ZP1-ASSOCIATED FEMALE INFERTILITY. JRNL REF NAT COMMUN V. 10 3086 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31300655 JRNL DOI 10.1038/S41467-019-10931-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.GREVE,P.M.WASSARMAN REMARK 1 TITL MOUSE EGG EXTRACELLULAR COAT IS A MATRIX OF INTERCONNECTED REMARK 1 TITL 2 FILAMENTS POSSESSING A STRUCTURAL REPEAT. REMARK 1 REF J. MOL. BIOL. V. 181 253 1985 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 3845123 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.RANKIN,P.TALBOT,E.LEE,J.DEAN REMARK 1 TITL ABNORMAL ZONAE PELLUCIDAE IN MICE LACKING ZP1 RESULT IN REMARK 1 TITL 2 EARLY EMBRYONIC LOSS. REMARK 1 REF DEVELOPMENT V. 126 3847 1999 REMARK 1 REFN ISSN 0950-1991 REMARK 1 PMID 10433913 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.TAKEUCHI,R.CHO,Y.IWATA,K.NISHIMURA,T.KATO,N.AOKI, REMARK 1 AUTH 2 K.KITAJIMA,T.MATSUDA REMARK 1 TITL MORPHOLOGICAL AND BIOCHEMICAL CHANGES OF ISOLATED CHICKEN REMARK 1 TITL 2 EGG-ENVELOPE DURING SPERM PENETRATION: DEGRADATION OF THE REMARK 1 TITL 3 97-KILODALTON GLYCOPROTEIN IS INVOLVED IN SPERM-DRIVEN HOLE REMARK 1 TITL 4 FORMATION ON THE EGG-ENVELOPE. REMARK 1 REF BIOL. REPROD. V. 64 822 2001 REMARK 1 REFN ISSN 0006-3363 REMARK 1 PMID 11207197 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.OKUMURA,Y.KOHNO,Y.IWATA,H.MORI,N.AOKI,C.SATO,K.KITAJIMA, REMARK 1 AUTH 2 D.NADANO,T.MATSUDA REMARK 1 TITL A NEWLY IDENTIFIED ZONA PELLUCIDA GLYCOPROTEIN, ZPD, AND REMARK 1 TITL 2 DIMERIC ZP1 OF CHICKEN EGG ENVELOPE ARE INVOLVED IN SPERM REMARK 1 TITL 3 ACTIVATION ON SPERM-EGG INTERACTION. REMARK 1 REF BIOCHEM. J. V. 384 191 2004 REMARK 1 REFN ESSN 1470-8728 REMARK 1 PMID 15264999 REMARK 1 DOI 10.1042/BJ20040299 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.L.HUANG,C.LV,Y.C.ZHAO,W.LI,X.M.HE,P.LI,A.G.SHA,X.TIAN, REMARK 1 AUTH 2 C.J.PAPASIAN,H.W.DENG,G.X.LU,H.M.XIAO REMARK 1 TITL MUTANT ZP1 IN FAMILIAL INFERTILITY. REMARK 1 REF N. ENGL. J. MED. V. 370 1220 2014 REMARK 1 REFN ESSN 1533-4406 REMARK 1 PMID 24670168 REMARK 1 DOI 10.1056/NEJMOA1308851 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.OKUMURA,T.SATO,R.SAKUMA,H.FUKUSHIMA,T.MATSUDA,M.UJITA REMARK 1 TITL IDENTIFICATION OF DISTINCTIVE INTERDOMAIN INTERACTIONS AMONG REMARK 1 TITL 2 ZP-N, ZP-C AND OTHER DOMAINS OF ZONA PELLUCIDA GLYCOPROTEINS REMARK 1 TITL 3 UNDERLYING ASSOCIATION OF CHICKEN EGG-COAT MATRIX. REMARK 1 REF FEBS OPEN BIO V. 5 454 2015 REMARK 1 REFN ESSN 2211-5463 REMARK 1 PMID 26106520 REMARK 1 DOI 10.1016/J.FOB.2015.05.005 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 11079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7254 - 6.1720 0.99 1332 138 0.1947 0.2115 REMARK 3 2 6.1720 - 4.9115 0.99 1276 126 0.1975 0.2175 REMARK 3 3 4.9115 - 4.2943 0.99 1245 142 0.1686 0.2039 REMARK 3 4 4.2943 - 3.9034 0.99 1266 120 0.1932 0.2298 REMARK 3 5 3.9034 - 3.6245 0.99 1216 155 0.2245 0.2456 REMARK 3 6 3.6245 - 3.4114 1.00 1242 139 0.2924 0.3226 REMARK 3 7 3.4114 - 3.2409 0.99 1235 128 0.3315 0.3800 REMARK 3 8 3.2409 - 3.1001 0.96 1197 122 0.3532 0.3833 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 103.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1780 REMARK 3 ANGLE : 0.657 2412 REMARK 3 CHIRALITY : 0.046 270 REMARK 3 PLANARITY : 0.004 298 REMARK 3 DIHEDRAL : 14.859 1026 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESI 25:127 OR RESI 201:203) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8626 5.4361 -13.3653 REMARK 3 T TENSOR REMARK 3 T11: 1.2428 T22: 1.2323 REMARK 3 T33: 1.2921 T12: -0.2496 REMARK 3 T13: -0.0139 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 4.8727 L22: 8.9179 REMARK 3 L33: 8.3884 L12: 2.8667 REMARK 3 L13: 0.0144 L23: 0.9841 REMARK 3 S TENSOR REMARK 3 S11: -0.5724 S12: 0.3240 S13: -0.4615 REMARK 3 S21: -1.2970 S22: 0.3373 S23: 0.2925 REMARK 3 S31: -0.1987 S32: -0.0805 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESI 23:127 OR RESI 201:203) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4766 -26.5701 -12.9753 REMARK 3 T TENSOR REMARK 3 T11: 1.2754 T22: 1.2204 REMARK 3 T33: 1.1449 T12: -0.2119 REMARK 3 T13: 0.0101 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 5.9327 L22: 4.0815 REMARK 3 L33: 7.1640 L12: 1.8380 REMARK 3 L13: 0.1161 L23: 0.4063 REMARK 3 S TENSOR REMARK 3 S11: 0.4189 S12: -0.9984 S13: 0.0580 REMARK 3 S21: 0.4551 S22: -0.3845 S23: -0.0334 REMARK 3 S31: -0.2017 S32: 0.1908 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11119 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MONOMER 6GF6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% (V/V) MPD, 0.1 M MES PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.50050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.50050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.38700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.86700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.38700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.86700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.50050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.38700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.86700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.50050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.38700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.86700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -52.50050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 GLN A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 128 REMARK 465 GLY A 129 REMARK 465 TYR A 130 REMARK 465 GLU A 131 REMARK 465 ILE A 132 REMARK 465 LEU A 133 REMARK 465 ARG A 134 REMARK 465 ASP A 135 REMARK 465 GLU A 136 REMARK 465 LYS A 137 REMARK 465 VAL A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 GLN A 147 REMARK 465 ARG A 148 REMARK 465 PRO A 149 REMARK 465 ASP A 150 REMARK 465 ARG A 151 REMARK 465 GLY A 152 REMARK 465 ASN A 153 REMARK 465 SER A 154 REMARK 465 ASP B 19 REMARK 465 ALA B 20 REMARK 465 ALA B 21 REMARK 465 GLN B 22 REMARK 465 ALA B 128 REMARK 465 GLY B 129 REMARK 465 TYR B 130 REMARK 465 GLU B 131 REMARK 465 ILE B 132 REMARK 465 LEU B 133 REMARK 465 ARG B 134 REMARK 465 ASP B 135 REMARK 465 GLU B 136 REMARK 465 LYS B 137 REMARK 465 VAL B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 GLN B 147 REMARK 465 ARG B 148 REMARK 465 PRO B 149 REMARK 465 ASP B 150 REMARK 465 ARG B 151 REMARK 465 GLY B 152 REMARK 465 ASN B 153 REMARK 465 SER B 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG C 1 O5 NAG C 2 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GF6 RELATED DB: PDB REMARK 900 HIGH-RESOLUTION ORTHORHOMBIC STRUCTURE OF THE SAME PROTEIN, TREATED REMARK 900 WITH ENDO-H REMARK 900 RELATED ID: 6GF7 RELATED DB: PDB REMARK 900 ZN-SAD ORTHORHOMBIC STRUCTURE OF THE SAME PROTEIN, TREATED WITH REMARK 900 ENDO-H DBREF1 6GF8 A 24 139 UNP A0A140JXP0_CHICK DBREF2 6GF8 A A0A140JXP0 24 139 DBREF1 6GF8 A 146 154 UNP A0A140JXP0_CHICK DBREF2 6GF8 A A0A140JXP0 141 149 DBREF1 6GF8 B 24 139 UNP A0A140JXP0_CHICK DBREF2 6GF8 B A0A140JXP0 24 139 DBREF1 6GF8 B 146 154 UNP A0A140JXP0_CHICK DBREF2 6GF8 B A0A140JXP0 141 149 SEQADV 6GF8 ASP A 19 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 ALA A 20 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 ALA A 21 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 GLN A 22 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 PRO A 23 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 GLN A 121 UNP A0A140JXP ASN 121 ENGINEERED MUTATION SEQADV 6GF8 HIS A 140 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS A 141 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS A 142 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS A 143 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS A 144 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS A 145 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 SER A 154 UNP A0A140JXP GLY 149 ENGINEERED MUTATION SEQADV 6GF8 ASP B 19 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 ALA B 20 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 ALA B 21 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 GLN B 22 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 PRO B 23 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 GLN B 121 UNP A0A140JXP ASN 121 ENGINEERED MUTATION SEQADV 6GF8 HIS B 140 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS B 141 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS B 142 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS B 143 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS B 144 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 HIS B 145 UNP A0A140JXP EXPRESSION TAG SEQADV 6GF8 SER B 154 UNP A0A140JXP GLY 149 ENGINEERED MUTATION SEQRES 1 A 136 ASP ALA ALA GLN PRO ALA LEU LEU GLN TYR HIS TYR ASP SEQRES 2 A 136 CYS GLY ASP PHE GLY MET GLN LEU LEU ALA TYR PRO THR SEQRES 3 A 136 ARG GLY ARG THR VAL HIS PHE LYS VAL LEU ASP GLU PHE SEQRES 4 A 136 GLY THR ARG PHE GLU VAL ALA ASN CYS SER ILE CYS MET SEQRES 5 A 136 HIS TRP LEU ASN THR GLY GLU ASP GLY GLY LEU ILE PHE SEQRES 6 A 136 SER ALA GLY TYR GLU GLY CYS HIS VAL LEU VAL LYS ASP SEQRES 7 A 136 GLY ARG TYR VAL LEU ARG VAL GLN LEU GLU GLU MET LEU SEQRES 8 A 136 LEU SER GLY VAL VAL ALA ALA SER TYR GLU VAL GLN MET SEQRES 9 A 136 THR CYS PRO ARG PRO ALA GLY TYR GLU ILE LEU ARG ASP SEQRES 10 A 136 GLU LYS VAL HIS HIS HIS HIS HIS HIS HIS HIS GLN ARG SEQRES 11 A 136 PRO ASP ARG GLY ASN SER SEQRES 1 B 136 ASP ALA ALA GLN PRO ALA LEU LEU GLN TYR HIS TYR ASP SEQRES 2 B 136 CYS GLY ASP PHE GLY MET GLN LEU LEU ALA TYR PRO THR SEQRES 3 B 136 ARG GLY ARG THR VAL HIS PHE LYS VAL LEU ASP GLU PHE SEQRES 4 B 136 GLY THR ARG PHE GLU VAL ALA ASN CYS SER ILE CYS MET SEQRES 5 B 136 HIS TRP LEU ASN THR GLY GLU ASP GLY GLY LEU ILE PHE SEQRES 6 B 136 SER ALA GLY TYR GLU GLY CYS HIS VAL LEU VAL LYS ASP SEQRES 7 B 136 GLY ARG TYR VAL LEU ARG VAL GLN LEU GLU GLU MET LEU SEQRES 8 B 136 LEU SER GLY VAL VAL ALA ALA SER TYR GLU VAL GLN MET SEQRES 9 B 136 THR CYS PRO ARG PRO ALA GLY TYR GLU ILE LEU ARG ASP SEQRES 10 B 136 GLU LYS VAL HIS HIS HIS HIS HIS HIS HIS HIS GLN ARG SEQRES 11 B 136 PRO ASP ARG GLY ASN SER HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG D 1 14 HET NAG D 2 14 HET MPD A 204 8 HET MPD A 205 8 HET MPD B 203 8 HET MPD B 204 8 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 5 MPD 4(C6 H14 O2) SHEET 1 AA1 4 GLN A 27 CYS A 32 0 SHEET 2 AA1 4 GLY A 36 TYR A 42 -1 O TYR A 42 N GLN A 27 SHEET 3 AA1 4 LEU A 81 GLY A 86 -1 O ALA A 85 N MET A 37 SHEET 4 AA1 4 HIS A 71 THR A 75 -1 N ASN A 74 O ILE A 82 SHEET 1 AA2 4 ARG A 60 GLU A 62 0 SHEET 2 AA2 4 THR A 48 LEU A 54 -1 N VAL A 53 O PHE A 61 SHEET 3 AA2 4 ARG A 98 MET A 108 -1 O GLN A 104 N LYS A 52 SHEET 4 AA2 4 LEU A 93 LYS A 95 -1 N LEU A 93 O VAL A 100 SHEET 1 AA3 4 ARG A 60 GLU A 62 0 SHEET 2 AA3 4 THR A 48 LEU A 54 -1 N VAL A 53 O PHE A 61 SHEET 3 AA3 4 ARG A 98 MET A 108 -1 O GLN A 104 N LYS A 52 SHEET 4 AA3 4 VAL A 114 CYS A 124 -1 O TYR A 118 N LEU A 105 SHEET 1 AA4 4 GLN B 27 CYS B 32 0 SHEET 2 AA4 4 GLY B 36 TYR B 42 -1 O LEU B 40 N HIS B 29 SHEET 3 AA4 4 LEU B 81 GLY B 86 -1 O ALA B 85 N MET B 37 SHEET 4 AA4 4 HIS B 71 THR B 75 -1 N ASN B 74 O ILE B 82 SHEET 1 AA5 4 ARG B 60 GLU B 62 0 SHEET 2 AA5 4 THR B 48 LEU B 54 -1 N VAL B 53 O PHE B 61 SHEET 3 AA5 4 ARG B 98 MET B 108 -1 O GLN B 104 N LYS B 52 SHEET 4 AA5 4 LEU B 93 LYS B 95 -1 N LEU B 93 O VAL B 100 SHEET 1 AA6 4 ARG B 60 GLU B 62 0 SHEET 2 AA6 4 THR B 48 LEU B 54 -1 N VAL B 53 O PHE B 61 SHEET 3 AA6 4 ARG B 98 MET B 108 -1 O GLN B 104 N LYS B 52 SHEET 4 AA6 4 VAL B 114 CYS B 124 -1 O MET B 122 N LEU B 101 SSBOND 1 CYS A 32 CYS A 124 1555 1555 2.04 SSBOND 2 CYS A 66 CYS A 66 1555 4555 2.03 SSBOND 3 CYS A 69 CYS A 90 1555 1555 2.03 SSBOND 4 CYS B 32 CYS B 124 1555 1555 2.03 SSBOND 5 CYS B 66 CYS B 66 1555 3554 2.04 SSBOND 6 CYS B 69 CYS B 90 1555 1555 2.04 LINK ND2 ASN A 65 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 65 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.41 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 CISPEP 1 CYS A 124 PRO A 125 0 -5.61 CISPEP 2 ARG A 126 PRO A 127 0 -3.77 CISPEP 3 CYS B 124 PRO B 125 0 -5.46 CISPEP 4 ARG B 126 PRO B 127 0 -3.71 CRYST1 90.774 125.734 105.001 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011016 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009524 0.00000