HEADER TRANSFERASE 01-MAY-18 6GFN TITLE METTL16 MTASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: U6 SMALL NUCLEAR RNA (ADENINE-(43)-N(6))-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHYLTRANSFERASE 10 DOMAIN-CONTAINING PROTEIN, COMPND 5 METHYLTRANSFERASE-LIKE PROTEIN 16,N6-ADENOSINE-METHYLTRANSFERASE COMPND 6 METTL16; COMPND 7 EC: 2.1.1.346,2.1.1.62; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METTL16, METT10D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM-11-SUMO KEYWDS RNA SAM METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.CHEN,M.MENDEL,D.HOMOLKA,A.A.MCCARTHY,R.S.PILLAI REVDAT 3 17-JAN-24 6GFN 1 REMARK REVDAT 2 03-OCT-18 6GFN 1 JRNL REVDAT 1 19-SEP-18 6GFN 0 JRNL AUTH M.MENDEL,K.M.CHEN,D.HOMOLKA,P.GOS,R.R.PANDEY,A.A.MCCARTHY, JRNL AUTH 2 R.S.PILLAI JRNL TITL METHYLATION OF STRUCTURED RNA BY THE M6A WRITER METTL16 IS JRNL TITL 2 ESSENTIAL FOR MOUSE EMBRYONIC DEVELOPMENT. JRNL REF MOL. CELL V. 71 986 2018 JRNL REFN ISSN 1097-4164 JRNL PMID 30197299 JRNL DOI 10.1016/J.MOLCEL.2018.08.004 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 60.9 REMARK 3 NUMBER OF REFLECTIONS : 5724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 295 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 12.49 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 409 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2151 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 393 REMARK 3 BIN R VALUE (WORKING SET) : 0.2105 REMARK 3 BIN FREE R VALUE : 0.3502 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.91 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2024 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 95.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01270 REMARK 3 B22 (A**2) : 1.01270 REMARK 3 B33 (A**2) : -2.02530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.446 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2099 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2848 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 723 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 359 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2099 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 273 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2443 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|300 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.3006 -21.6060 -14.6035 REMARK 3 T TENSOR REMARK 3 T11: -0.2172 T22: -0.1632 REMARK 3 T33: -0.1606 T12: -0.1999 REMARK 3 T13: -0.0856 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.8387 L22: 2.5435 REMARK 3 L33: 8.6447 L12: -0.5008 REMARK 3 L13: -0.6072 L23: -2.2046 REMARK 3 S TENSOR REMARK 3 S11: 0.0939 S12: 0.1721 S13: -0.0963 REMARK 3 S21: 0.0138 S22: -0.1446 S23: 0.0283 REMARK 3 S31: 0.7668 S32: -0.4718 S33: 0.0507 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BE CRL AND MULTILAYER MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 11, 2017 (BUILT REMARK 200 20171111) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2, AUTOPROC, REMARK 200 STARANISO 1.10.9 (20171213) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 82.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.17700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 6GFK REMARK 200 REMARK 200 REMARK: ROD SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DI-SODIUM TARTRATE AND 20% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.18000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 46.18000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.32500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.16250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.18000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 135.48750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.18000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 135.48750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.18000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.16250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 46.18000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 46.18000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.32500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 46.18000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 46.18000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 90.32500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 46.18000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 135.48750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 46.18000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 45.16250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 46.18000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 45.16250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 46.18000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 135.48750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 46.18000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 46.18000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.32500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 97 REMARK 465 SER A 98 REMARK 465 PHE A 188 REMARK 465 ALA A 189 REMARK 465 ASN A 190 REMARK 465 GLN A 191 REMARK 465 LEU A 192 REMARK 465 GLU A 193 REMARK 465 ALA A 194 REMARK 465 LYS A 195 REMARK 465 GLY A 196 REMARK 465 VAL A 197 REMARK 465 ASN A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ASN A 201 REMARK 465 PRO A 202 REMARK 465 ARG A 203 REMARK 465 ARG A 204 REMARK 465 PRO A 205 REMARK 465 PRO A 206 REMARK 465 PRO A 207 REMARK 465 SER A 208 REMARK 465 SER A 209 REMARK 465 VAL A 210 REMARK 465 ASN A 211 REMARK 465 THR A 212 REMARK 465 GLY A 213 REMARK 465 GLY A 214 REMARK 465 ILE A 215 REMARK 465 THR A 216 REMARK 465 GLU A 217 REMARK 465 ILE A 218 REMARK 465 MET A 219 REMARK 465 ALA A 220 REMARK 465 GLU A 221 REMARK 465 GLY A 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 SER A 101 OG REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 6 3.31 51.61 REMARK 500 VAL A 79 -59.70 -26.06 REMARK 500 ILE A 93 23.21 -76.60 REMARK 500 HIS A 95 -74.60 -31.90 REMARK 500 LEU A 165 -153.57 -130.12 REMARK 500 LYS A 171 -12.86 -145.85 REMARK 500 GLU A 172 98.53 -161.06 REMARK 500 LYS A 239 -111.90 39.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GFK RELATED DB: PDB REMARK 900 DELN-METLL16 DBREF 6GFN A 1 291 UNP Q86W50 MET16_HUMAN 1 291 SEQRES 1 A 291 MET ALA LEU SER LYS SER MET HIS ALA ARG ASN ARG TYR SEQRES 2 A 291 LYS ASP LYS PRO PRO ASP PHE ALA TYR LEU ALA SER LYS SEQRES 3 A 291 TYR PRO ASP PHE LYS GLN HIS VAL GLN ILE ASN LEU ASN SEQRES 4 A 291 GLY ARG VAL SER LEU ASN PHE LYS ASP PRO GLU ALA VAL SEQRES 5 A 291 ARG ALA LEU THR CYS THR LEU LEU ARG GLU ASP PHE GLY SEQRES 6 A 291 LEU SER ILE ASP ILE PRO LEU GLU ARG LEU ILE PRO THR SEQRES 7 A 291 VAL PRO LEU ARG LEU ASN TYR ILE HIS TRP VAL GLU ASP SEQRES 8 A 291 LEU ILE GLY HIS GLN ASP SER ASP LYS SER THR LEU ARG SEQRES 9 A 291 ARG GLY ILE ASP ILE GLY THR GLY ALA SER CYS ILE TYR SEQRES 10 A 291 PRO LEU LEU GLY ALA THR LEU ASN GLY TRP TYR PHE LEU SEQRES 11 A 291 ALA THR GLU VAL ASP ASP MET CYS PHE ASN TYR ALA LYS SEQRES 12 A 291 LYS ASN VAL GLU GLN ASN ASN LEU SER ASP LEU ILE LYS SEQRES 13 A 291 VAL VAL LYS VAL PRO GLN LYS THR LEU LEU MET ASP ALA SEQRES 14 A 291 LEU LYS GLU GLU SER GLU ILE ILE TYR ASP PHE CYS MET SEQRES 15 A 291 CYS ASN PRO PRO PHE PHE ALA ASN GLN LEU GLU ALA LYS SEQRES 16 A 291 GLY VAL ASN SER ARG ASN PRO ARG ARG PRO PRO PRO SER SEQRES 17 A 291 SER VAL ASN THR GLY GLY ILE THR GLU ILE MET ALA GLU SEQRES 18 A 291 GLY GLY GLU LEU GLU PHE VAL LYS ARG ILE ILE HIS ASP SEQRES 19 A 291 SER LEU GLN LEU LYS LYS ARG LEU ARG TRP TYR SER CYS SEQRES 20 A 291 MET LEU GLY LYS LYS CYS SER LEU ALA PRO LEU LYS GLU SEQRES 21 A 291 GLU LEU ARG ILE GLN GLY VAL PRO LYS VAL THR TYR THR SEQRES 22 A 291 GLU PHE CYS GLN GLY ARG THR MET ARG TRP ALA LEU ALA SEQRES 23 A 291 TRP SER PHE TYR ASP HET SAH A 300 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 HOH *11(H2 O) HELIX 1 AA1 LEU A 3 MET A 7 5 5 HELIX 2 AA2 ASN A 11 LYS A 16 1 6 HELIX 3 AA3 ASP A 19 TYR A 27 1 9 HELIX 4 AA4 TYR A 27 GLN A 32 1 6 HELIX 5 AA5 ASP A 48 GLY A 65 1 18 HELIX 6 AA6 THR A 78 ILE A 93 1 16 HELIX 7 AA7 CYS A 115 ASN A 125 1 11 HELIX 8 AA8 ASP A 135 ASN A 149 1 15 HELIX 9 AA9 LEU A 165 LEU A 170 1 6 HELIX 10 AB1 GLU A 224 LYS A 239 1 16 HELIX 11 AB2 LYS A 251 CYS A 253 5 3 HELIX 12 AB3 SER A 254 GLN A 265 1 12 SHEET 1 AA1 2 VAL A 34 ILE A 36 0 SHEET 2 AA1 2 VAL A 42 LEU A 44 -1 O SER A 43 N GLN A 35 SHEET 1 AA2 7 ILE A 155 LYS A 159 0 SHEET 2 AA2 7 TYR A 128 GLU A 133 1 N ALA A 131 O VAL A 158 SHEET 3 AA2 7 ARG A 105 ILE A 109 1 N ASP A 108 O THR A 132 SHEET 4 AA2 7 TYR A 178 CYS A 183 1 O ASP A 179 N ARG A 105 SHEET 5 AA2 7 LEU A 242 LEU A 249 1 O SER A 246 N CYS A 181 SHEET 6 AA2 7 THR A 280 SER A 288 -1 O LEU A 285 N CYS A 247 SHEET 7 AA2 7 LYS A 269 TYR A 272 -1 N THR A 271 O ALA A 286 SHEET 1 AA3 7 ILE A 155 LYS A 159 0 SHEET 2 AA3 7 TYR A 128 GLU A 133 1 N ALA A 131 O VAL A 158 SHEET 3 AA3 7 ARG A 105 ILE A 109 1 N ASP A 108 O THR A 132 SHEET 4 AA3 7 TYR A 178 CYS A 183 1 O ASP A 179 N ARG A 105 SHEET 5 AA3 7 LEU A 242 LEU A 249 1 O SER A 246 N CYS A 181 SHEET 6 AA3 7 THR A 280 SER A 288 -1 O LEU A 285 N CYS A 247 SHEET 7 AA3 7 PHE A 275 GLN A 277 -1 N PHE A 275 O ARG A 282 CISPEP 1 GLU A 172 GLU A 173 0 4.26 SITE 1 AC1 19 ARG A 82 GLY A 110 THR A 111 GLY A 112 SITE 2 AC1 19 SER A 114 ILE A 116 TYR A 117 THR A 132 SITE 3 AC1 19 GLU A 133 VAL A 134 ASP A 135 CYS A 138 SITE 4 AC1 19 GLN A 162 THR A 164 LEU A 165 ASN A 184 SITE 5 AC1 19 ARG A 230 HOH A 402 HOH A 403 CRYST1 92.360 92.360 180.650 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005536 0.00000