HEADER PHOTOSYNTHESIS 01-MAY-18 6GFR TITLE CYANOBACTERIAL GAPDH WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: TLL1466; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1452720; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS CALVIN CYCLE, REGULATION, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR C.R.MCFARLANE,J.W.MURRAY REVDAT 3 17-JAN-24 6GFR 1 LINK REVDAT 2 20-NOV-19 6GFR 1 JRNL REVDAT 1 08-MAY-19 6GFR 0 JRNL AUTH C.R.MCFARLANE,N.R.SHAH,B.V.KABASAKAL,B.ECHEVERRIA, JRNL AUTH 2 C.A.R.COTTON,D.BUBECK,J.W.MURRAY JRNL TITL STRUCTURAL BASIS OF LIGHT-INDUCED REDOX REGULATION IN THE JRNL TITL 2 CALVIN-BENSON CYCLE IN CYANOBACTERIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 20984 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31570616 JRNL DOI 10.1073/PNAS.1906722116 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.9791 - 5.3756 1.00 2890 133 0.1547 0.1755 REMARK 3 2 5.3756 - 4.2670 1.00 2743 148 0.1201 0.1651 REMARK 3 3 4.2670 - 3.7276 1.00 2679 172 0.1269 0.1717 REMARK 3 4 3.7276 - 3.3868 1.00 2683 141 0.1374 0.1722 REMARK 3 5 3.3868 - 3.1441 1.00 2671 139 0.1547 0.2079 REMARK 3 6 3.1441 - 2.9587 1.00 2648 154 0.1650 0.2052 REMARK 3 7 2.9587 - 2.8105 1.00 2647 138 0.1660 0.1980 REMARK 3 8 2.8105 - 2.6882 1.00 2649 130 0.1567 0.2131 REMARK 3 9 2.6882 - 2.5847 1.00 2672 123 0.1664 0.2397 REMARK 3 10 2.5847 - 2.4955 1.00 2661 118 0.1686 0.2100 REMARK 3 11 2.4955 - 2.4175 1.00 2643 132 0.1676 0.1991 REMARK 3 12 2.4175 - 2.3483 1.00 2624 130 0.1673 0.2411 REMARK 3 13 2.3483 - 2.2865 1.00 2642 144 0.1736 0.2474 REMARK 3 14 2.2865 - 2.2307 1.00 2595 147 0.1843 0.2176 REMARK 3 15 2.2307 - 2.1800 1.00 2594 145 0.1880 0.2401 REMARK 3 16 2.1800 - 2.1336 1.00 2650 135 0.2040 0.2279 REMARK 3 17 2.1336 - 2.0909 1.00 2598 141 0.2109 0.2597 REMARK 3 18 2.0909 - 2.0515 1.00 2618 151 0.2298 0.2654 REMARK 3 19 2.0515 - 2.0148 1.00 2603 138 0.2459 0.2765 REMARK 3 20 2.0148 - 1.9807 1.00 2631 130 0.2597 0.2913 REMARK 3 21 1.9807 - 1.9487 1.00 2604 136 0.2852 0.3373 REMARK 3 22 1.9487 - 1.9187 0.97 2522 125 0.3056 0.3192 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5368 REMARK 3 ANGLE : 0.902 7312 REMARK 3 CHIRALITY : 0.056 841 REMARK 3 PLANARITY : 0.006 932 REMARK 3 DIHEDRAL : 13.750 3187 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6073 -52.5033 -14.0164 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.1986 REMARK 3 T33: 0.1536 T12: 0.0151 REMARK 3 T13: 0.0497 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 3.0870 L22: 2.6853 REMARK 3 L33: 1.3140 L12: 0.5705 REMARK 3 L13: -0.2229 L23: 0.4043 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: 0.2204 S13: -0.1999 REMARK 3 S21: -0.2022 S22: 0.0955 S23: -0.3126 REMARK 3 S31: 0.1060 S32: 0.1817 S33: -0.0131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7494 -29.5253 -8.5279 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.1685 REMARK 3 T33: 0.2163 T12: -0.0255 REMARK 3 T13: 0.0163 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.9952 L22: 0.9249 REMARK 3 L33: 0.4685 L12: 0.1688 REMARK 3 L13: -0.1711 L23: -0.0972 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.0535 S13: 0.1126 REMARK 3 S21: -0.1464 S22: 0.0075 S23: -0.2120 REMARK 3 S31: -0.0587 S32: 0.1145 S33: 0.0072 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.5775 -29.6880 -25.5825 REMARK 3 T TENSOR REMARK 3 T11: 0.4961 T22: 0.3398 REMARK 3 T33: 0.2224 T12: 0.0440 REMARK 3 T13: -0.0940 T23: 0.0778 REMARK 3 L TENSOR REMARK 3 L11: 3.3746 L22: 0.4700 REMARK 3 L33: 3.1921 L12: -0.3484 REMARK 3 L13: 1.6864 L23: -1.0087 REMARK 3 S TENSOR REMARK 3 S11: 0.0530 S12: 0.5469 S13: 0.2078 REMARK 3 S21: -0.6674 S22: -0.0762 S23: -0.0257 REMARK 3 S31: -0.3211 S32: 0.2017 S33: 0.0530 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.8863 -36.5887 -20.7877 REMARK 3 T TENSOR REMARK 3 T11: 0.3168 T22: 0.3866 REMARK 3 T33: 0.3840 T12: 0.0980 REMARK 3 T13: -0.1853 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.9358 L22: 3.0730 REMARK 3 L33: 1.3898 L12: -0.1990 REMARK 3 L13: -0.1363 L23: -0.8892 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.2849 S13: 0.1097 REMARK 3 S21: -0.2860 S22: -0.0472 S23: 0.6975 REMARK 3 S31: -0.2720 S32: -0.2632 S33: 0.0023 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.1970 -40.6686 -0.8215 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.1553 REMARK 3 T33: 0.2018 T12: 0.0263 REMARK 3 T13: -0.0416 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.7345 L22: 3.2188 REMARK 3 L33: 1.8078 L12: 1.7000 REMARK 3 L13: 0.8223 L23: 2.3210 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: 0.0443 S13: -0.0192 REMARK 3 S21: -0.1831 S22: -0.1077 S23: 0.3997 REMARK 3 S31: -0.0899 S32: -0.1146 S33: 0.1718 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 203 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.6181 -47.3625 -5.9042 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.1961 REMARK 3 T33: 0.2978 T12: 0.0370 REMARK 3 T13: -0.0450 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 3.9535 L22: 1.9920 REMARK 3 L33: 4.3820 L12: 0.7144 REMARK 3 L13: 2.3586 L23: 2.3212 REMARK 3 S TENSOR REMARK 3 S11: -0.1460 S12: 0.0520 S13: 0.2563 REMARK 3 S21: -0.3271 S22: -0.3366 S23: 0.5929 REMARK 3 S31: -0.2443 S32: -0.4580 S33: 0.4965 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 229 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.7705 -54.5869 -5.5852 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.1557 REMARK 3 T33: 0.2325 T12: 0.0097 REMARK 3 T13: -0.0260 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.1552 L22: 3.0806 REMARK 3 L33: 1.2144 L12: 0.4104 REMARK 3 L13: -0.1606 L23: -0.1143 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: 0.0745 S13: -0.2186 REMARK 3 S21: -0.0847 S22: -0.0946 S23: 0.3687 REMARK 3 S31: 0.0476 S32: -0.0932 S33: 0.1351 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.7621 -54.3462 -17.4374 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.2215 REMARK 3 T33: 0.2152 T12: 0.0125 REMARK 3 T13: -0.0555 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 1.2961 L22: 2.3634 REMARK 3 L33: 1.7706 L12: 0.0058 REMARK 3 L13: -0.0510 L23: -0.6105 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: 0.2964 S13: -0.2016 REMARK 3 S21: -0.3482 S22: -0.0470 S23: 0.1557 REMARK 3 S31: 0.0485 S32: -0.0921 S33: 0.0414 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61333 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.919 REMARK 200 RESOLUTION RANGE LOW (A) : 69.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.22050 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 0.92350 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG3350 2% TACSIMATE, 100 MM REMARK 280 HEPES, PH 7, VAPOR DIFFUSION, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.25050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 69.93250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.93250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.37575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.93250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 69.93250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.12525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.93250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.93250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.37575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 69.93250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.93250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.12525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.25050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -154.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1276 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1257 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 58.79 -94.68 REMARK 500 ASN A 26 52.80 -110.94 REMARK 500 PRO A 87 41.45 -85.15 REMARK 500 THR A 123 48.47 -86.01 REMARK 500 ASN A 138 12.64 -142.47 REMARK 500 ALA A 152 -157.49 61.13 REMARK 500 ALA A 202 111.68 -39.57 REMARK 500 VAL A 241 130.03 90.38 REMARK 500 THR A 269 -91.67 -135.72 REMARK 500 HIS A 335 56.87 -114.14 REMARK 500 PHE B 9 58.70 -95.41 REMARK 500 ASP B 64 -156.89 -131.87 REMARK 500 PRO B 87 41.03 -86.44 REMARK 500 ASN B 129 63.67 -104.26 REMARK 500 ASN B 138 13.08 -141.04 REMARK 500 ALA B 152 -152.94 66.66 REMARK 500 VAL B 241 130.64 84.50 REMARK 500 THR B 269 -94.48 -128.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1318 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 305 O REMARK 620 2 HOH A1184 O 80.7 REMARK 620 3 HOH A1256 O 105.6 93.0 REMARK 620 4 HOH A1260 O 156.2 98.3 98.2 REMARK 620 5 HOH B1239 O 93.6 173.8 86.0 88.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 1003 DBREF 6GFR A 1 337 UNP Q8DIW5 Q8DIW5_THEEB 1 337 DBREF 6GFR B 1 337 UNP Q8DIW5 Q8DIW5_THEEB 1 337 SEQADV 6GFR GLY A -1 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GFR SER A 0 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GFR GLY B -1 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GFR SER B 0 UNP Q8DIW5 EXPRESSION TAG SEQRES 1 A 339 GLY SER MET VAL ARG VAL ALA ILE ASN GLY PHE GLY ARG SEQRES 2 A 339 ILE GLY ARG ASN PHE MET ARG CYS TRP LEU GLN ARG LYS SEQRES 3 A 339 ALA ASN SER LYS LEU GLU ILE VAL GLY ILE ASN ASP THR SEQRES 4 A 339 SER ASP PRO ARG THR ASN ALA HIS LEU LEU LYS TYR ASP SEQRES 5 A 339 SER MET LEU GLY ILE PHE GLN ASP ALA GLU ILE THR ALA SEQRES 6 A 339 ASP ASP ASP CYS ILE TYR ALA GLY GLY HIS ALA VAL LYS SEQRES 7 A 339 CYS VAL SER ASP ARG ASN PRO GLU ASN LEU PRO TRP SER SEQRES 8 A 339 ALA TRP GLY ILE ASP LEU VAL ILE GLU ALA THR GLY VAL SEQRES 9 A 339 PHE THR SER ARG GLU GLY ALA SER LYS HIS LEU SER ALA SEQRES 10 A 339 GLY ALA LYS LYS VAL LEU ILE THR ALA PRO GLY LYS GLY SEQRES 11 A 339 ASN ILE PRO THR TYR VAL VAL GLY VAL ASN HIS HIS THR SEQRES 12 A 339 TYR ASP PRO SER GLU ASP ILE VAL SER ASN ALA SER CYS SEQRES 13 A 339 THR THR ASN CYS LEU ALA PRO ILE VAL LYS VAL LEU HIS SEQRES 14 A 339 GLU ALA PHE GLY ILE GLN GLN GLY MET MET THR THR THR SEQRES 15 A 339 HIS SER TYR THR GLY ASP GLN ARG LEU LEU ASP ALA SER SEQRES 16 A 339 HIS ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA MET ASN SEQRES 17 A 339 ILE VAL PRO THR SER THR GLY ALA ALA LYS ALA VAL GLY SEQRES 18 A 339 LEU VAL ILE PRO GLU LEU GLN GLY LYS LEU ASN GLY ILE SEQRES 19 A 339 ALA LEU ARG VAL PRO THR PRO ASN VAL SER VAL VAL ASP SEQRES 20 A 339 PHE VAL ALA GLN VAL GLU LYS PRO THR ILE ALA GLU GLN SEQRES 21 A 339 VAL ASN GLN VAL ILE LYS GLU ALA SER GLU THR THR MET SEQRES 22 A 339 LYS GLY ILE ILE HIS TYR SER GLU LEU GLU LEU VAL SER SEQRES 23 A 339 SER ASP TYR ARG GLY HIS ASN ALA SER SER ILE LEU ASP SEQRES 24 A 339 ALA SER LEU THR MET VAL LEU GLY GLY ASN LEU VAL LYS SEQRES 25 A 339 VAL VAL ALA TRP TYR ASP ASN GLU TRP GLY TYR SER GLN SEQRES 26 A 339 ARG VAL LEU ASP LEU ALA GLU HIS MET ALA ALA HIS TRP SEQRES 27 A 339 ALA SEQRES 1 B 339 GLY SER MET VAL ARG VAL ALA ILE ASN GLY PHE GLY ARG SEQRES 2 B 339 ILE GLY ARG ASN PHE MET ARG CYS TRP LEU GLN ARG LYS SEQRES 3 B 339 ALA ASN SER LYS LEU GLU ILE VAL GLY ILE ASN ASP THR SEQRES 4 B 339 SER ASP PRO ARG THR ASN ALA HIS LEU LEU LYS TYR ASP SEQRES 5 B 339 SER MET LEU GLY ILE PHE GLN ASP ALA GLU ILE THR ALA SEQRES 6 B 339 ASP ASP ASP CYS ILE TYR ALA GLY GLY HIS ALA VAL LYS SEQRES 7 B 339 CYS VAL SER ASP ARG ASN PRO GLU ASN LEU PRO TRP SER SEQRES 8 B 339 ALA TRP GLY ILE ASP LEU VAL ILE GLU ALA THR GLY VAL SEQRES 9 B 339 PHE THR SER ARG GLU GLY ALA SER LYS HIS LEU SER ALA SEQRES 10 B 339 GLY ALA LYS LYS VAL LEU ILE THR ALA PRO GLY LYS GLY SEQRES 11 B 339 ASN ILE PRO THR TYR VAL VAL GLY VAL ASN HIS HIS THR SEQRES 12 B 339 TYR ASP PRO SER GLU ASP ILE VAL SER ASN ALA SER CYS SEQRES 13 B 339 THR THR ASN CYS LEU ALA PRO ILE VAL LYS VAL LEU HIS SEQRES 14 B 339 GLU ALA PHE GLY ILE GLN GLN GLY MET MET THR THR THR SEQRES 15 B 339 HIS SER TYR THR GLY ASP GLN ARG LEU LEU ASP ALA SER SEQRES 16 B 339 HIS ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA MET ASN SEQRES 17 B 339 ILE VAL PRO THR SER THR GLY ALA ALA LYS ALA VAL GLY SEQRES 18 B 339 LEU VAL ILE PRO GLU LEU GLN GLY LYS LEU ASN GLY ILE SEQRES 19 B 339 ALA LEU ARG VAL PRO THR PRO ASN VAL SER VAL VAL ASP SEQRES 20 B 339 PHE VAL ALA GLN VAL GLU LYS PRO THR ILE ALA GLU GLN SEQRES 21 B 339 VAL ASN GLN VAL ILE LYS GLU ALA SER GLU THR THR MET SEQRES 22 B 339 LYS GLY ILE ILE HIS TYR SER GLU LEU GLU LEU VAL SER SEQRES 23 B 339 SER ASP TYR ARG GLY HIS ASN ALA SER SER ILE LEU ASP SEQRES 24 B 339 ALA SER LEU THR MET VAL LEU GLY GLY ASN LEU VAL LYS SEQRES 25 B 339 VAL VAL ALA TRP TYR ASP ASN GLU TRP GLY TYR SER GLN SEQRES 26 B 339 ARG VAL LEU ASP LEU ALA GLU HIS MET ALA ALA HIS TRP SEQRES 27 B 339 ALA HET NAD A1001 44 HET ACT A1002 7 HET MG A1003 1 HET NAD B1001 44 HET ACT B1002 7 HET ACT B1003 7 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 5 MG MG 2+ FORMUL 9 HOH *391(H2 O) HELIX 1 AA1 GLY A 10 LYS A 24 1 15 HELIX 2 AA2 ALA A 25 SER A 27 5 3 HELIX 3 AA3 ASP A 39 LYS A 48 1 10 HELIX 4 AA4 ASN A 82 LEU A 86 5 5 HELIX 5 AA5 SER A 105 SER A 110 1 6 HELIX 6 AA6 SER A 110 GLY A 116 1 7 HELIX 7 AA7 ASN A 138 TYR A 142 5 5 HELIX 8 AA8 SER A 153 GLY A 171 1 19 HELIX 9 AA9 GLY A 213 ILE A 222 1 10 HELIX 10 AB1 PRO A 223 GLN A 226 5 4 HELIX 11 AB2 ILE A 255 GLU A 268 1 14 HELIX 12 AB3 VAL A 283 ARG A 288 5 6 HELIX 13 AB4 SER A 299 THR A 301 5 3 HELIX 14 AB5 GLU A 318 HIS A 335 1 18 HELIX 15 AB6 GLY B 10 ARG B 23 1 14 HELIX 16 AB7 ASP B 39 LYS B 48 1 10 HELIX 17 AB8 ASN B 82 LEU B 86 5 5 HELIX 18 AB9 SER B 105 ALA B 115 1 11 HELIX 19 AC1 ASN B 138 TYR B 142 5 5 HELIX 20 AC2 SER B 153 GLY B 171 1 19 HELIX 21 AC3 GLY B 213 ILE B 222 1 10 HELIX 22 AC4 PRO B 223 GLN B 226 5 4 HELIX 23 AC5 ILE B 255 THR B 269 1 15 HELIX 24 AC6 VAL B 283 ARG B 288 5 6 HELIX 25 AC7 SER B 299 THR B 301 5 3 HELIX 26 AC8 GLU B 318 HIS B 335 1 18 SHEET 1 AA1 8 ILE A 61 ALA A 63 0 SHEET 2 AA1 8 CYS A 67 ALA A 70 -1 O TYR A 69 N THR A 62 SHEET 3 AA1 8 HIS A 73 VAL A 78 -1 O VAL A 75 N ILE A 68 SHEET 4 AA1 8 LEU A 29 ASN A 35 1 N VAL A 32 O LYS A 76 SHEET 5 AA1 8 VAL A 2 ASN A 7 1 N VAL A 4 O GLU A 30 SHEET 6 AA1 8 LEU A 95 GLU A 98 1 O ILE A 97 N ASN A 7 SHEET 7 AA1 8 LYS A 119 ILE A 122 1 O LEU A 121 N GLU A 98 SHEET 8 AA1 8 ILE A 148 SER A 150 1 O VAL A 149 N ILE A 122 SHEET 1 AA2 2 TYR A 49 ASP A 50 0 SHEET 2 AA2 2 GLY A 54 ILE A 55 -1 O GLY A 54 N ASP A 50 SHEET 1 AA3 7 VAL A 208 THR A 210 0 SHEET 2 AA3 7 LEU A 229 VAL A 236 -1 O ALA A 233 N THR A 210 SHEET 3 AA3 7 ILE A 172 SER A 182 1 N THR A 179 O LEU A 234 SHEET 4 AA3 7 SER A 242 VAL A 250 -1 O GLN A 249 N GLN A 173 SHEET 5 AA3 7 LEU A 308 TYR A 315 -1 O VAL A 309 N ALA A 248 SHEET 6 AA3 7 SER A 294 ASP A 297 -1 N ASP A 297 O VAL A 312 SHEET 7 AA3 7 ILE A 275 SER A 278 1 N HIS A 276 O SER A 294 SHEET 1 AA4 6 VAL A 208 THR A 210 0 SHEET 2 AA4 6 LEU A 229 VAL A 236 -1 O ALA A 233 N THR A 210 SHEET 3 AA4 6 ILE A 172 SER A 182 1 N THR A 179 O LEU A 234 SHEET 4 AA4 6 SER A 242 VAL A 250 -1 O GLN A 249 N GLN A 173 SHEET 5 AA4 6 LEU A 308 TYR A 315 -1 O VAL A 309 N ALA A 248 SHEET 6 AA4 6 MET A 302 LEU A 304 -1 N MET A 302 O LYS A 310 SHEET 1 AA5 8 ILE B 61 ALA B 63 0 SHEET 2 AA5 8 CYS B 67 ALA B 70 -1 O TYR B 69 N THR B 62 SHEET 3 AA5 8 HIS B 73 VAL B 78 -1 O VAL B 75 N ILE B 68 SHEET 4 AA5 8 LEU B 29 ASN B 35 1 N VAL B 32 O LYS B 76 SHEET 5 AA5 8 VAL B 2 ASN B 7 1 N VAL B 4 O GLU B 30 SHEET 6 AA5 8 LEU B 95 GLU B 98 1 O ILE B 97 N ASN B 7 SHEET 7 AA5 8 LYS B 119 ILE B 122 1 O LEU B 121 N VAL B 96 SHEET 8 AA5 8 ILE B 148 SER B 150 1 O VAL B 149 N ILE B 122 SHEET 1 AA6 2 TYR B 49 ASP B 50 0 SHEET 2 AA6 2 GLY B 54 ILE B 55 -1 O GLY B 54 N ASP B 50 SHEET 1 AA7 7 VAL B 208 THR B 210 0 SHEET 2 AA7 7 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA7 7 ILE B 172 SER B 182 1 N THR B 179 O LEU B 234 SHEET 4 AA7 7 SER B 242 VAL B 250 -1 O ASP B 245 N THR B 178 SHEET 5 AA7 7 LEU B 308 TYR B 315 -1 O TYR B 315 N SER B 242 SHEET 6 AA7 7 SER B 294 ASP B 297 -1 N ASP B 297 O VAL B 312 SHEET 7 AA7 7 ILE B 275 SER B 278 1 N HIS B 276 O SER B 294 SHEET 1 AA8 6 VAL B 208 THR B 210 0 SHEET 2 AA8 6 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA8 6 ILE B 172 SER B 182 1 N THR B 179 O LEU B 234 SHEET 4 AA8 6 SER B 242 VAL B 250 -1 O ASP B 245 N THR B 178 SHEET 5 AA8 6 LEU B 308 TYR B 315 -1 O TYR B 315 N SER B 242 SHEET 6 AA8 6 MET B 302 LEU B 304 -1 N MET B 302 O LYS B 310 LINK O GLY A 305 MG MG A1003 1555 1555 2.73 LINK MG MG A1003 O HOH A1184 1555 7555 2.40 LINK MG MG A1003 O HOH A1256 1555 7555 2.37 LINK MG MG A1003 O HOH A1260 1555 7555 2.37 LINK MG MG A1003 O HOH B1239 1555 5454 2.57 SITE 1 AC1 36 GLY A 8 PHE A 9 GLY A 10 ARG A 11 SITE 2 AC1 36 ILE A 12 ASN A 35 ASP A 36 THR A 37 SITE 3 AC1 36 ARG A 81 ALA A 99 THR A 100 GLY A 101 SITE 4 AC1 36 THR A 123 ALA A 124 ASN A 317 TYR A 321 SITE 5 AC1 36 HOH A1103 HOH A1121 HOH A1128 HOH A1137 SITE 6 AC1 36 HOH A1185 HOH A1187 HOH A1188 HOH A1203 SITE 7 AC1 36 HOH A1216 HOH A1220 HOH A1222 HOH A1226 SITE 8 AC1 36 HOH A1234 HOH A1237 HOH A1243 HOH A1251 SITE 9 AC1 36 HOH A1252 HOH A1253 HOH A1280 HOH B1157 SITE 1 AC2 6 SER A 153 THR A 155 THR A 212 GLY A 213 SITE 2 AC2 6 ARG A 235 HOH A1174 SITE 1 AC3 6 GLY A 305 ASN A 307 HOH A1184 HOH A1256 SITE 2 AC3 6 HOH A1260 HOH B1239 SITE 1 AC4 30 HOH A1163 GLY B 8 PHE B 9 GLY B 10 SITE 2 AC4 30 ARG B 11 ILE B 12 ASN B 35 ASP B 36 SITE 3 AC4 30 THR B 37 ARG B 81 ALA B 99 THR B 100 SITE 4 AC4 30 GLY B 101 PHE B 103 THR B 123 ALA B 124 SITE 5 AC4 30 ASN B 317 TYR B 321 ACT B1003 HOH B1107 SITE 6 AC4 30 HOH B1113 HOH B1116 HOH B1122 HOH B1129 SITE 7 AC4 30 HOH B1134 HOH B1142 HOH B1151 HOH B1171 SITE 8 AC4 30 HOH B1177 HOH B1197 SITE 1 AC5 5 SER B 153 THR B 155 THR B 212 GLY B 213 SITE 2 AC5 5 HOH B1112 SITE 1 AC6 3 THR B 184 ASP B 186 NAD B1001 CRYST1 139.865 139.865 80.501 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007150 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012422 0.00000