HEADER TRANSLATION 02-MAY-18 6GFU TITLE CRYSTAL STRUCTURE OF AN ANCIENT SEQUENCE-RECONSTRUCTED ELONGATION TITLE 2 FACTOR TU (NODE 262) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TU; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN SYNTHESIS, ELONGATION FACTOR, SEQUENCE RECONSTRUCTION, KEYWDS 2 ANCIENT PROTEIN, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.MAJUMDAR,A.D.TARAFDER,X.GE,B.KACAR,S.SANYAL REVDAT 2 17-JAN-24 6GFU 1 LINK REVDAT 1 22-MAY-19 6GFU 0 JRNL AUTH S.MAJUMDAR,A.D.TARAFDER,X.GE,B.KACAR,S.SANYAL JRNL TITL CRYSTAL STRUCTURE OF AN ANCIENT SEQUENCE-RECONSTRUCTED JRNL TITL 2 ELONGATION FACTOR TU (NODE 262) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 31282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2916 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.12000 REMARK 3 B22 (A**2) : 3.52000 REMARK 3 B33 (A**2) : -2.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.288 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2997 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2889 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4073 ; 1.946 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6651 ; 1.031 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 6.430 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;39.791 ;24.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;15.211 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.636 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3370 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 621 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6GFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07227 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33001 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 61.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 1.05200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: 1EFC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 4000, 20% V/V GLYCEROL REMARK 280 0.03M OF EACH ETHYLENE GLYCOL (0.3M DIETHYLENEGLYCOL, 0.3M REMARK 280 TRIETHYLENEGLYCOL, 0.3M TETRAETHYLENEGLYCOL, 0.3M REMARK 280 PENTAETHYLENEGLYCOL), 0.1M MOPS/HEPES-NA PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.47200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.87800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.84550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.87800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.47200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.84550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 PHE A 6 REMARK 465 GLU A 7 REMARK 465 ARG A 8 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 9 OG1 CG2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LYS A 45 NZ REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 ARG A 59 NE CZ NH1 NH2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 GLU A 187 CD OE1 OE2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 SER A 222 OG REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LEU A 278 CD1 CD2 REMARK 470 LYS A 314 CD CE NZ REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 155 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 263 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 319 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 319 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 334 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 334 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 224 -36.02 -133.10 REMARK 500 ILE A 248 -49.39 71.07 REMARK 500 ALA A 271 126.69 -36.35 REMARK 500 ARG A 334 -60.69 70.18 REMARK 500 THR A 335 -2.10 -140.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 26 OG1 REMARK 620 2 GDP A 501 O3B 90.4 REMARK 620 3 HOH A 639 O 82.4 88.6 REMARK 620 4 HOH A 652 O 95.4 87.3 175.4 REMARK 620 5 HOH A 653 O 172.0 89.2 89.6 92.5 REMARK 620 6 HOH A 692 O 84.3 174.2 93.0 90.8 96.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 DBREF 6GFU A 1 400 PDB 6GFU 6GFU 1 400 SEQRES 1 A 400 MET ALA LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL SEQRES 2 A 400 ASN ILE GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR SEQRES 3 A 400 THR LEU THR ALA ALA ILE THR LYS VAL LEU ALA GLU LYS SEQRES 4 A 400 GLY GLY ALA GLU PHE LYS ALA TYR ASP GLN ILE ASP LYS SEQRES 5 A 400 ALA PRO GLU GLU LYS ALA ARG GLY ILE THR ILE SER THR SEQRES 6 A 400 ALA HIS VAL GLU TYR GLU THR GLU ASN ARG HIS TYR ALA SEQRES 7 A 400 HIS VAL ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN SEQRES 8 A 400 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 A 400 VAL VAL SER ALA ALA ASP GLY PRO MET PRO GLN THR ARG SEQRES 10 A 400 GLU HIS ILE LEU LEU ALA ARG GLN VAL GLY VAL PRO TYR SEQRES 11 A 400 ILE VAL VAL PHE LEU ASN LYS VAL ASP MET VAL ASP ASP SEQRES 12 A 400 PRO GLU LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU SEQRES 13 A 400 LEU LEU SER SER TYR ASP PHE PRO GLY ASP ASP ILE PRO SEQRES 14 A 400 ILE ILE LYS GLY SER ALA LEU LYS ALA LEU GLU GLY ASP SEQRES 15 A 400 GLU ILE GLY GLU GLU ALA ILE LEU LYS LEU MET ASP ALA SEQRES 16 A 400 VAL ASP SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP SEQRES 17 A 400 LYS PRO PHE LEU MET PRO ILE GLU ASP VAL PHE SER ILE SEQRES 18 A 400 SER GLY ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG SEQRES 19 A 400 GLY ILE VAL LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY SEQRES 20 A 400 ILE ARG ASP THR GLN LYS THR THR CYS THR GLY VAL GLU SEQRES 21 A 400 MET PHE ARG LYS LEU LEU ASP GLN GLY GLN ALA GLY ASP SEQRES 22 A 400 ASN VAL GLY VAL LEU LEU ARG GLY THR LYS ARG GLU ASP SEQRES 23 A 400 VAL GLU ARG GLY GLN VAL LEU ALA LYS PRO GLY SER ILE SEQRES 24 A 400 LYS PRO HIS THR LYS PHE GLU ALA GLU VAL TYR ILE LEU SEQRES 25 A 400 THR LYS GLU GLU GLY GLY ARG HIS THR PRO PHE PHE ASN SEQRES 26 A 400 ASN TYR ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL SEQRES 27 A 400 THR GLY VAL VAL THR LEU PRO GLU GLY VAL GLU MET VAL SEQRES 28 A 400 MET PRO GLY ASP ASN VAL THR ILE THR VAL GLU LEU ILE SEQRES 29 A 400 ALA PRO ILE ALA MET GLU GLU GLY LEU ARG PHE ALA ILE SEQRES 30 A 400 ARG GLU GLY GLY ARG THR VAL GLY ALA GLY VAL VAL SER SEQRES 31 A 400 LYS ILE ILE GLU HIS HIS HIS HIS HIS HIS HET GDP A 501 28 HET MG A 502 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *136(H2 O) HELIX 1 AA1 GLY A 24 LYS A 39 1 16 HELIX 2 AA2 ALA A 46 LYS A 52 1 7 HELIX 3 AA3 GLY A 84 GLY A 95 1 12 HELIX 4 AA4 MET A 113 GLY A 127 1 15 HELIX 5 AA5 LYS A 137 VAL A 141 5 5 HELIX 6 AA6 ASP A 143 SER A 160 1 18 HELIX 7 AA7 SER A 174 GLU A 180 1 7 HELIX 8 AA8 ASP A 182 ILE A 200 1 19 HELIX 9 AA9 ARG A 205 LYS A 209 5 5 HELIX 10 AB1 LYS A 283 VAL A 287 5 5 SHEET 1 AA1 6 ALA A 66 GLU A 71 0 SHEET 2 AA1 6 HIS A 76 ASP A 81 -1 O ASP A 81 N ALA A 66 SHEET 3 AA1 6 HIS A 12 ILE A 18 1 N ILE A 15 O ALA A 78 SHEET 4 AA1 6 ALA A 102 SER A 107 1 O ILE A 103 N GLY A 16 SHEET 5 AA1 6 ILE A 131 ASN A 136 1 O VAL A 132 N LEU A 104 SHEET 6 AA1 6 ILE A 170 LYS A 172 1 O ILE A 171 N LEU A 135 SHEET 1 AA2 2 GLU A 55 ALA A 58 0 SHEET 2 AA2 2 ILE A 61 SER A 64 -1 O ILE A 63 N GLU A 56 SHEET 1 AA3 7 LEU A 212 PRO A 214 0 SHEET 2 AA3 7 VAL A 292 ALA A 294 -1 O LEU A 293 N MET A 213 SHEET 3 AA3 7 GLU A 242 VAL A 246 -1 N GLU A 244 O ALA A 294 SHEET 4 AA3 7 GLN A 252 MET A 261 -1 O GLN A 252 N ILE A 245 SHEET 5 AA3 7 ASN A 274 LEU A 279 -1 O GLY A 276 N GLU A 260 SHEET 6 AA3 7 GLY A 225 ARG A 231 -1 N VAL A 228 O VAL A 277 SHEET 7 AA3 7 ASP A 217 ILE A 221 -1 N PHE A 219 O VAL A 227 SHEET 1 AA4 5 LEU A 212 PRO A 214 0 SHEET 2 AA4 5 VAL A 292 ALA A 294 -1 O LEU A 293 N MET A 213 SHEET 3 AA4 5 GLU A 242 VAL A 246 -1 N GLU A 244 O ALA A 294 SHEET 4 AA4 5 GLN A 252 MET A 261 -1 O GLN A 252 N ILE A 245 SHEET 5 AA4 5 LYS A 264 LEU A 266 -1 O LEU A 266 N VAL A 259 SHEET 1 AA5 2 ILE A 236 LYS A 238 0 SHEET 2 AA5 2 GLN A 268 GLN A 270 -1 O GLY A 269 N VAL A 237 SHEET 1 AA6 7 LYS A 300 ILE A 311 0 SHEET 2 AA6 7 ASN A 356 MET A 369 -1 O LEU A 363 N THR A 303 SHEET 3 AA6 7 THR A 336 THR A 343 -1 N THR A 343 O THR A 360 SHEET 4 AA6 7 GLN A 330 PHE A 333 -1 N PHE A 333 O THR A 336 SHEET 5 AA6 7 ARG A 374 GLU A 379 -1 O ALA A 376 N TYR A 332 SHEET 6 AA6 7 ARG A 382 ILE A 392 -1 O VAL A 384 N ILE A 377 SHEET 7 AA6 7 LYS A 300 ILE A 311 -1 N TYR A 310 O ALA A 386 SHEET 1 AA7 2 PHE A 323 PHE A 324 0 SHEET 2 AA7 2 MET A 350 VAL A 351 -1 O VAL A 351 N PHE A 323 LINK OG1 THR A 26 MG MG A 502 1555 1555 2.11 LINK O3B GDP A 501 MG MG A 502 1555 1555 2.12 LINK MG MG A 502 O HOH A 639 1555 1555 2.11 LINK MG MG A 502 O HOH A 652 1555 1555 1.98 LINK MG MG A 502 O HOH A 653 1555 1555 2.04 LINK MG MG A 502 O HOH A 692 1555 1555 2.18 SITE 1 AC1 22 ASP A 22 HIS A 23 GLY A 24 LYS A 25 SITE 2 AC1 22 THR A 26 THR A 27 TYR A 47 ASN A 136 SITE 3 AC1 22 LYS A 137 ASP A 139 MET A 140 SER A 174 SITE 4 AC1 22 ALA A 175 LEU A 176 MG A 502 HOH A 623 SITE 5 AC1 22 HOH A 639 HOH A 643 HOH A 652 HOH A 653 SITE 6 AC1 22 HOH A 701 HOH A 717 SITE 1 AC2 6 THR A 26 GDP A 501 HOH A 639 HOH A 652 SITE 2 AC2 6 HOH A 653 HOH A 692 CRYST1 56.944 73.691 113.756 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008791 0.00000