HEADER SUGAR BINDING PROTEIN 02-MAY-18 6GFV TITLE M TUBERCULOSIS LPQI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE CONSERVED LIPOPROTEIN LPQI; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: LPQI, RV0237; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS PEPTIDOGLYCAN MYCOBACTERIUM GH3, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.MOYNIHAN,A.L.LOVERING REVDAT 4 17-JAN-24 6GFV 1 REMARK REVDAT 3 26-JUN-19 6GFV 1 JRNL REVDAT 2 29-MAY-19 6GFV 1 JRNL REVDAT 1 15-MAY-19 6GFV 0 JRNL AUTH P.J.MOYNIHAN,I.T.CADBY,N.VEERAPEN,M.JANKUTE,M.CROSATTI, JRNL AUTH 2 G.V.MUKAMOLOVA,A.L.LOVERING,G.S.BESRA JRNL TITL THE HYDROLASE LPQI PRIMES MYCOBACTERIAL PEPTIDOGLYCAN JRNL TITL 2 RECYCLING. JRNL REF NAT COMMUN V. 10 2647 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31201321 JRNL DOI 10.1038/S41467-019-10586-2 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 54485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.9280 - 5.3196 1.00 2668 141 0.1779 0.2203 REMARK 3 2 5.3196 - 4.2224 1.00 2583 154 0.1460 0.1837 REMARK 3 3 4.2224 - 3.6887 1.00 2635 134 0.1533 0.2002 REMARK 3 4 3.6887 - 3.3515 1.00 2592 148 0.1617 0.2162 REMARK 3 5 3.3515 - 3.1113 1.00 2604 125 0.1927 0.2440 REMARK 3 6 3.1113 - 2.9278 1.00 2622 122 0.2130 0.2382 REMARK 3 7 2.9278 - 2.7812 1.00 2611 123 0.2204 0.2945 REMARK 3 8 2.7812 - 2.6601 1.00 2595 137 0.2320 0.2790 REMARK 3 9 2.6601 - 2.5577 1.00 2560 135 0.2251 0.2962 REMARK 3 10 2.5577 - 2.4694 1.00 2614 151 0.2310 0.3414 REMARK 3 11 2.4694 - 2.3922 1.00 2560 136 0.2393 0.2629 REMARK 3 12 2.3922 - 2.3238 1.00 2577 152 0.2470 0.2970 REMARK 3 13 2.3238 - 2.2627 1.00 2589 137 0.2543 0.3080 REMARK 3 14 2.2627 - 2.2074 1.00 2562 133 0.2698 0.3373 REMARK 3 15 2.2074 - 2.1573 0.99 2559 151 0.2680 0.3052 REMARK 3 16 2.1573 - 2.1114 0.99 2564 114 0.2938 0.3753 REMARK 3 17 2.1114 - 2.0691 0.99 2592 135 0.3053 0.3700 REMARK 3 18 2.0691 - 2.0301 0.99 2556 128 0.3233 0.3480 REMARK 3 19 2.0301 - 1.9938 0.99 2550 140 0.3387 0.4010 REMARK 3 20 1.9938 - 1.9600 0.99 2556 140 0.3417 0.3832 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5076 REMARK 3 ANGLE : 1.168 6926 REMARK 3 CHIRALITY : 0.043 818 REMARK 3 PLANARITY : 0.006 930 REMARK 3 DIHEDRAL : 12.400 1862 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 46:67) REMARK 3 ORIGIN FOR THE GROUP (A): -73.5764 -97.9655 -16.6560 REMARK 3 T TENSOR REMARK 3 T11: 0.2897 T22: 0.3234 REMARK 3 T33: 0.2293 T12: -0.0118 REMARK 3 T13: -0.0491 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.1742 L22: 0.2449 REMARK 3 L33: 0.0851 L12: 0.0953 REMARK 3 L13: -0.1418 L23: -0.1067 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.3020 S13: -0.2601 REMARK 3 S21: 0.4052 S22: 0.0363 S23: -0.1155 REMARK 3 S31: 0.3189 S32: -0.2193 S33: 0.0096 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 68:124) REMARK 3 ORIGIN FOR THE GROUP (A): -68.5069-109.1948 -29.6874 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.1879 REMARK 3 T33: 0.2252 T12: 0.0044 REMARK 3 T13: -0.0120 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.3478 L22: 2.4948 REMARK 3 L33: 0.0564 L12: -0.0107 REMARK 3 L13: 0.2334 L23: -0.4295 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.1196 S13: -0.1580 REMARK 3 S21: 0.3085 S22: -0.0099 S23: -0.1061 REMARK 3 S31: 0.0295 S32: 0.0243 S33: -0.0422 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 125:157) REMARK 3 ORIGIN FOR THE GROUP (A): -76.9896-104.2048 -52.9159 REMARK 3 T TENSOR REMARK 3 T11: 0.1718 T22: 0.2294 REMARK 3 T33: 0.1909 T12: -0.0394 REMARK 3 T13: 0.0284 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.2908 L22: 0.6397 REMARK 3 L33: 0.2283 L12: 0.1368 REMARK 3 L13: 0.1101 L23: 0.2230 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: 0.0998 S13: 0.0433 REMARK 3 S21: -0.2811 S22: -0.0135 S23: -0.1854 REMARK 3 S31: 0.1160 S32: 0.0241 S33: 0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 158:173) REMARK 3 ORIGIN FOR THE GROUP (A): -83.6521-107.1733 -43.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.1148 T22: 0.1790 REMARK 3 T33: 0.2198 T12: -0.0090 REMARK 3 T13: -0.0288 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2298 L22: 0.1479 REMARK 3 L33: 0.4343 L12: -0.0825 REMARK 3 L13: 0.1823 L23: 0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0857 S12: -0.0009 S13: -0.0465 REMARK 3 S21: 0.0507 S22: -0.0760 S23: 0.1904 REMARK 3 S31: 0.2241 S32: -0.0727 S33: -0.0759 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 174:282) REMARK 3 ORIGIN FOR THE GROUP (A): -71.8938 -89.9141 -47.8472 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.1611 REMARK 3 T33: 0.1741 T12: -0.0073 REMARK 3 T13: 0.0343 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.9834 L22: 1.7469 REMARK 3 L33: 0.7850 L12: 0.4192 REMARK 3 L13: 0.2421 L23: 0.0892 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: 0.1552 S13: 0.0576 REMARK 3 S21: -0.2601 S22: 0.0487 S23: -0.1547 REMARK 3 S31: -0.0062 S32: 0.0166 S33: -0.0493 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 283:355) REMARK 3 ORIGIN FOR THE GROUP (A): -63.2844 -90.2205 -34.2671 REMARK 3 T TENSOR REMARK 3 T11: 0.0969 T22: 0.1615 REMARK 3 T33: 0.2646 T12: -0.0156 REMARK 3 T13: -0.0283 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.4299 L22: 1.2077 REMARK 3 L33: 0.8497 L12: 0.3565 REMARK 3 L13: -0.0640 L23: -0.3721 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.0421 S13: 0.1329 REMARK 3 S21: 0.1412 S22: -0.0779 S23: -0.4329 REMARK 3 S31: -0.0392 S32: 0.1302 S33: -0.0208 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 356:388) REMARK 3 ORIGIN FOR THE GROUP (A): -69.1099 -92.0592 -21.8828 REMARK 3 T TENSOR REMARK 3 T11: 0.2041 T22: 0.2111 REMARK 3 T33: 0.2122 T12: -0.0064 REMARK 3 T13: -0.0430 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.4140 L22: 0.5318 REMARK 3 L33: 0.9571 L12: -0.4130 REMARK 3 L13: 0.0429 L23: -0.3505 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.2465 S13: 0.0655 REMARK 3 S21: 0.4298 S22: -0.0751 S23: -0.2088 REMARK 3 S31: 0.0294 S32: 0.0454 S33: 0.0066 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 50:96) REMARK 3 ORIGIN FOR THE GROUP (A): -51.1221 -71.6402 -64.8165 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.2082 REMARK 3 T33: 0.1903 T12: 0.0097 REMARK 3 T13: -0.0337 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.3390 L22: 0.6089 REMARK 3 L33: 0.5289 L12: -0.1650 REMARK 3 L13: 0.0883 L23: -0.2595 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.1400 S13: 0.0568 REMARK 3 S21: -0.0692 S22: 0.0105 S23: 0.3266 REMARK 3 S31: -0.1524 S32: -0.1992 S33: -0.0014 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 97:131) REMARK 3 ORIGIN FOR THE GROUP (A): -39.0346 -64.8070 -65.3184 REMARK 3 T TENSOR REMARK 3 T11: 0.3492 T22: 0.1492 REMARK 3 T33: 0.1468 T12: -0.0201 REMARK 3 T13: 0.0262 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.4809 L22: 0.9156 REMARK 3 L33: 0.7872 L12: 0.0894 REMARK 3 L13: 0.5925 L23: -0.1059 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: 0.0252 S13: -0.0169 REMARK 3 S21: -0.3917 S22: 0.0422 S23: -0.0079 REMARK 3 S31: -0.1872 S32: -0.0225 S33: -0.1836 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 132:170) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0710 -69.3436 -61.0895 REMARK 3 T TENSOR REMARK 3 T11: 0.2403 T22: 0.2278 REMARK 3 T33: 0.2400 T12: -0.0747 REMARK 3 T13: 0.0771 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 0.7202 L22: 1.4601 REMARK 3 L33: 0.9885 L12: -0.3543 REMARK 3 L13: -0.0817 L23: -0.2977 REMARK 3 S TENSOR REMARK 3 S11: -0.1209 S12: 0.1452 S13: 0.2582 REMARK 3 S21: -0.3596 S22: 0.0457 S23: -0.6049 REMARK 3 S31: -0.2042 S32: 0.1793 S33: -0.1968 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 171:228) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3462 -79.2012 -65.7483 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.1759 REMARK 3 T33: 0.1550 T12: -0.0087 REMARK 3 T13: 0.0854 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.6939 L22: 1.5524 REMARK 3 L33: 0.6748 L12: -0.0659 REMARK 3 L13: 0.7197 L23: 0.0914 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: 0.1102 S13: 0.0753 REMARK 3 S21: -0.4085 S22: 0.0047 S23: -0.4412 REMARK 3 S31: -0.0482 S32: 0.1749 S33: 0.0435 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 229:294) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4924 -89.8466 -72.7983 REMARK 3 T TENSOR REMARK 3 T11: 0.3386 T22: 0.1677 REMARK 3 T33: 0.1201 T12: -0.0074 REMARK 3 T13: 0.0023 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.2881 L22: 0.6286 REMARK 3 L33: 0.4798 L12: -0.1592 REMARK 3 L13: 0.1311 L23: 0.3113 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: 0.1572 S13: -0.0641 REMARK 3 S21: -0.3402 S22: 0.0102 S23: -0.0492 REMARK 3 S31: 0.0754 S32: 0.1771 S33: -0.0161 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 295:358) REMARK 3 ORIGIN FOR THE GROUP (A): -44.1226 -82.6816 -73.1839 REMARK 3 T TENSOR REMARK 3 T11: 0.3253 T22: 0.1779 REMARK 3 T33: 0.0997 T12: -0.0029 REMARK 3 T13: -0.0489 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.6678 L22: 1.0964 REMARK 3 L33: 0.7589 L12: 0.0207 REMARK 3 L13: -0.0051 L23: 0.4760 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.1310 S13: -0.0610 REMARK 3 S21: -0.4898 S22: -0.0548 S23: 0.1869 REMARK 3 S31: -0.0881 S32: -0.0318 S33: -0.0162 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 359:388) REMARK 3 ORIGIN FOR THE GROUP (A): -51.9413 -82.7994 -62.2669 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.2109 REMARK 3 T33: 0.2138 T12: -0.0307 REMARK 3 T13: -0.0209 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.6241 L22: 0.5237 REMARK 3 L33: 0.4596 L12: -0.3719 REMARK 3 L13: -0.2509 L23: -0.2068 REMARK 3 S TENSOR REMARK 3 S11: 0.0881 S12: 0.0489 S13: 0.1976 REMARK 3 S21: -0.0505 S22: -0.0647 S23: 0.4575 REMARK 3 S31: 0.1353 S32: -0.1358 S33: -0.0035 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92820 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 70.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M SODIUM MALONATE 0.1M HEPES 0.5% REMARK 280 W/V JEFFAMINE ED-2001, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.91050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.78950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.91050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.78950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 662 O HOH A 670 2.03 REMARK 500 O HOH A 624 O HOH A 723 2.11 REMARK 500 O HOH A 537 O HOH A 688 2.11 REMARK 500 O HOH B 517 O HOH B 611 2.14 REMARK 500 O HOH B 628 O HOH B 658 2.15 REMARK 500 NH1 ARG B 166 O HOH B 401 2.15 REMARK 500 O HOH A 479 O HOH A 576 2.15 REMARK 500 O HOH B 556 O HOH B 651 2.16 REMARK 500 O HOH B 442 O HOH B 582 2.16 REMARK 500 O HOH A 402 O HOH A 599 2.16 REMARK 500 O HOH B 531 O HOH B 634 2.18 REMARK 500 O HOH B 402 O HOH B 585 2.18 REMARK 500 O HOH B 451 O HOH B 623 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 600 O HOH B 590 1556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 -169.62 -164.60 REMARK 500 ILE A 192 -65.47 -98.31 REMARK 500 ASP A 253 -82.18 -142.55 REMARK 500 LEU A 279 -51.17 -130.15 REMARK 500 ILE B 192 -66.54 -102.64 REMARK 500 ASP B 253 -81.45 -144.29 REMARK 500 LEU B 279 -50.04 -141.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 734 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 736 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 738 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 739 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 740 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A 741 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A 742 DISTANCE = 8.76 ANGSTROMS REMARK 525 HOH B 680 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 681 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 682 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B 683 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 684 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B 685 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B 686 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B 687 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B 688 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH B 689 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH B 690 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B 691 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH B 692 DISTANCE = 8.75 ANGSTROMS REMARK 525 HOH B 693 DISTANCE = 8.93 ANGSTROMS DBREF 6GFV A 46 388 UNP L7N6B0 L7N6B0_MYCTU 44 386 DBREF 6GFV B 46 388 UNP L7N6B0 L7N6B0_MYCTU 44 386 SEQRES 1 A 343 PRO VAL PRO ARG SER CYS ALA GLU PRO ALA GLY ILE PRO SEQRES 2 A 343 ALA LEU LEU SER PRO ARG ASP LYS LEU ALA GLN LEU LEU SEQRES 3 A 343 VAL VAL GLY VAL ARG ASP ALA ALA ASP ALA GLN ALA VAL SEQRES 4 A 343 VAL THR ASN TYR HIS VAL GLY GLY ILE LEU ILE GLY SER SEQRES 5 A 343 ASP THR ASP LEU THR ILE PHE ASP GLY ALA LEU ALA GLU SEQRES 6 A 343 ILE VAL ALA GLY GLY GLY PRO LEU PRO LEU ALA VAL SER SEQRES 7 A 343 VAL ASP GLU GLU GLY GLY ARG VAL SER ARG LEU ARG SER SEQRES 8 A 343 LEU ILE GLY GLY THR GLY PRO SER ALA ARG GLU LEU ALA SEQRES 9 A 343 GLN THR ARG THR VAL GLN GLN VAL ARG ASP LEU ALA ARG SEQRES 10 A 343 ASP ARG GLY ARG GLN MET ARG LYS LEU GLY ILE THR ILE SEQRES 11 A 343 ASP PHE ALA PRO VAL VAL ASP VAL THR ASP ALA PRO ASP SEQRES 12 A 343 ASP THR VAL ILE GLY ASP ARG SER PHE GLY SER ASP PRO SEQRES 13 A 343 ALA THR VAL THR ALA TYR ALA GLY ALA TYR ALA GLN GLY SEQRES 14 A 343 LEU ARG ASP ALA GLY VAL LEU PRO VAL LEU LYS HIS PHE SEQRES 15 A 343 PRO GLY HIS GLY ARG GLY SER GLY ASP SER HIS ASN GLY SEQRES 16 A 343 GLY VAL THR THR PRO PRO LEU ASP ASP LEU VAL GLY ASP SEQRES 17 A 343 ASP LEU VAL PRO TYR ARG THR LEU VAL THR GLN ALA PRO SEQRES 18 A 343 VAL GLY VAL MET VAL GLY HIS LEU GLN VAL PRO GLY LEU SEQRES 19 A 343 THR GLY SER GLU PRO ALA SER LEU SER LYS ALA ALA VAL SEQRES 20 A 343 ASN LEU LEU ARG THR GLY THR GLY TYR GLY ALA PRO PRO SEQRES 21 A 343 PHE ASP GLY PRO VAL PHE SER ASP ASP LEU SER GLY MET SEQRES 22 A 343 ALA ALA ILE SER ASP ARG PHE GLY VAL SER GLU ALA VAL SEQRES 23 A 343 LEU ARG THR LEU GLN ALA GLY ALA ASP ILE ALA LEU TRP SEQRES 24 A 343 VAL THR THR LYS GLU VAL PRO ALA VAL LEU ASP ARG LEU SEQRES 25 A 343 GLU GLN ALA LEU ARG ALA GLY GLU LEU PRO MET SER ALA SEQRES 26 A 343 VAL ASP ARG SER VAL VAL ARG VAL ALA THR MET LYS GLY SEQRES 27 A 343 PRO ASN PRO GLY CYS SEQRES 1 B 343 PRO VAL PRO ARG SER CYS ALA GLU PRO ALA GLY ILE PRO SEQRES 2 B 343 ALA LEU LEU SER PRO ARG ASP LYS LEU ALA GLN LEU LEU SEQRES 3 B 343 VAL VAL GLY VAL ARG ASP ALA ALA ASP ALA GLN ALA VAL SEQRES 4 B 343 VAL THR ASN TYR HIS VAL GLY GLY ILE LEU ILE GLY SER SEQRES 5 B 343 ASP THR ASP LEU THR ILE PHE ASP GLY ALA LEU ALA GLU SEQRES 6 B 343 ILE VAL ALA GLY GLY GLY PRO LEU PRO LEU ALA VAL SER SEQRES 7 B 343 VAL ASP GLU GLU GLY GLY ARG VAL SER ARG LEU ARG SER SEQRES 8 B 343 LEU ILE GLY GLY THR GLY PRO SER ALA ARG GLU LEU ALA SEQRES 9 B 343 GLN THR ARG THR VAL GLN GLN VAL ARG ASP LEU ALA ARG SEQRES 10 B 343 ASP ARG GLY ARG GLN MET ARG LYS LEU GLY ILE THR ILE SEQRES 11 B 343 ASP PHE ALA PRO VAL VAL ASP VAL THR ASP ALA PRO ASP SEQRES 12 B 343 ASP THR VAL ILE GLY ASP ARG SER PHE GLY SER ASP PRO SEQRES 13 B 343 ALA THR VAL THR ALA TYR ALA GLY ALA TYR ALA GLN GLY SEQRES 14 B 343 LEU ARG ASP ALA GLY VAL LEU PRO VAL LEU LYS HIS PHE SEQRES 15 B 343 PRO GLY HIS GLY ARG GLY SER GLY ASP SER HIS ASN GLY SEQRES 16 B 343 GLY VAL THR THR PRO PRO LEU ASP ASP LEU VAL GLY ASP SEQRES 17 B 343 ASP LEU VAL PRO TYR ARG THR LEU VAL THR GLN ALA PRO SEQRES 18 B 343 VAL GLY VAL MET VAL GLY HIS LEU GLN VAL PRO GLY LEU SEQRES 19 B 343 THR GLY SER GLU PRO ALA SER LEU SER LYS ALA ALA VAL SEQRES 20 B 343 ASN LEU LEU ARG THR GLY THR GLY TYR GLY ALA PRO PRO SEQRES 21 B 343 PHE ASP GLY PRO VAL PHE SER ASP ASP LEU SER GLY MET SEQRES 22 B 343 ALA ALA ILE SER ASP ARG PHE GLY VAL SER GLU ALA VAL SEQRES 23 B 343 LEU ARG THR LEU GLN ALA GLY ALA ASP ILE ALA LEU TRP SEQRES 24 B 343 VAL THR THR LYS GLU VAL PRO ALA VAL LEU ASP ARG LEU SEQRES 25 B 343 GLU GLN ALA LEU ARG ALA GLY GLU LEU PRO MET SER ALA SEQRES 26 B 343 VAL ASP ARG SER VAL VAL ARG VAL ALA THR MET LYS GLY SEQRES 27 B 343 PRO ASN PRO GLY CYS FORMUL 3 HOH *635(H2 O) HELIX 1 AA1 GLU A 53 LEU A 61 5 9 HELIX 2 AA2 SER A 62 GLN A 69 1 8 HELIX 3 AA3 ASP A 77 HIS A 89 1 13 HELIX 4 AA4 ASP A 100 ASP A 105 5 6 HELIX 5 AA5 GLY A 106 GLY A 115 1 10 HELIX 6 AA6 SER A 144 ARG A 152 1 9 HELIX 7 AA7 THR A 153 GLY A 172 1 20 HELIX 8 AA8 ILE A 192 SER A 196 5 5 HELIX 9 AA9 ASP A 200 ALA A 218 1 19 HELIX 10 AB1 PRO A 246 GLY A 252 1 7 HELIX 11 AB2 LEU A 255 VAL A 262 1 8 HELIX 12 AB3 PRO A 284 LEU A 287 5 4 HELIX 13 AB4 SER A 288 GLY A 298 1 11 HELIX 14 AB5 THR A 299 GLY A 302 5 4 HELIX 15 AB6 MET A 318 ASP A 323 1 6 HELIX 16 AB7 GLY A 326 GLY A 338 1 13 HELIX 17 AB8 GLU A 349 ALA A 363 1 15 HELIX 18 AB9 PRO A 367 GLY A 383 1 17 HELIX 19 AC1 GLU B 53 LEU B 61 5 9 HELIX 20 AC2 SER B 62 GLN B 69 1 8 HELIX 21 AC3 ASP B 77 HIS B 89 1 13 HELIX 22 AC4 ASP B 100 ASP B 105 5 6 HELIX 23 AC5 GLY B 106 GLY B 114 1 9 HELIX 24 AC6 SER B 144 ARG B 152 1 9 HELIX 25 AC7 THR B 153 GLY B 172 1 20 HELIX 26 AC8 ILE B 192 SER B 196 5 5 HELIX 27 AC9 ASP B 200 ALA B 218 1 19 HELIX 28 AD1 PRO B 246 GLY B 252 1 7 HELIX 29 AD2 LEU B 255 VAL B 262 1 8 HELIX 30 AD3 PRO B 284 LEU B 287 5 4 HELIX 31 AD4 SER B 288 GLY B 298 1 11 HELIX 32 AD5 THR B 299 GLY B 302 5 4 HELIX 33 AD6 MET B 318 ASP B 323 1 6 HELIX 34 AD7 GLY B 326 ALA B 337 1 12 HELIX 35 AD8 GLU B 349 ALA B 363 1 15 HELIX 36 AD9 PRO B 367 GLY B 383 1 17 SHEET 1 AA1 8 VAL A 310 SER A 312 0 SHEET 2 AA1 8 GLY A 268 VAL A 271 1 N VAL A 269 O PHE A 311 SHEET 3 AA1 8 LEU A 221 PHE A 227 1 N LEU A 224 O MET A 270 SHEET 4 AA1 8 ILE A 175 ASP A 176 1 N ASP A 176 O LEU A 221 SHEET 5 AA1 8 ALA A 121 VAL A 124 1 O VAL A 122 N ILE A 175 SHEET 6 AA1 8 GLY A 92 ILE A 95 1 N ILE A 95 O SER A 123 SHEET 7 AA1 8 LEU A 71 GLY A 74 1 N VAL A 73 O LEU A 94 SHEET 8 AA1 8 ALA A 342 TRP A 344 1 O ALA A 342 N VAL A 72 SHEET 1 AA2 2 GLU A 126 GLY A 128 0 SHEET 2 AA2 2 VAL A 131 SER A 132 -1 O VAL A 131 N GLU A 127 SHEET 1 AA3 2 VAL A 242 THR A 243 0 SHEET 2 AA3 2 LEU A 274 GLN A 275 1 O GLN A 275 N VAL A 242 SHEET 1 AA4 8 VAL B 310 SER B 312 0 SHEET 2 AA4 8 GLY B 268 VAL B 271 1 N VAL B 271 O PHE B 311 SHEET 3 AA4 8 LEU B 221 PHE B 227 1 N LEU B 224 O MET B 270 SHEET 4 AA4 8 ILE B 175 ASP B 176 1 N ASP B 176 O LEU B 221 SHEET 5 AA4 8 ALA B 121 VAL B 124 1 O VAL B 122 N ILE B 175 SHEET 6 AA4 8 GLY B 92 ILE B 95 1 N ILE B 95 O SER B 123 SHEET 7 AA4 8 LEU B 71 GLY B 74 1 N VAL B 73 O LEU B 94 SHEET 8 AA4 8 ALA B 342 TRP B 344 1 O ALA B 342 N VAL B 72 SHEET 1 AA5 2 GLU B 126 GLY B 128 0 SHEET 2 AA5 2 VAL B 131 SER B 132 -1 O VAL B 131 N GLU B 127 SHEET 1 AA6 2 VAL B 242 THR B 243 0 SHEET 2 AA6 2 LEU B 274 GLN B 275 1 O GLN B 275 N VAL B 242 SSBOND 1 CYS A 51 CYS A 388 1555 1555 2.04 SSBOND 2 CYS B 51 CYS B 388 1555 1555 2.03 CISPEP 1 GLY A 116 PRO A 117 0 1.26 CISPEP 2 ALA A 178 PRO A 179 0 9.31 CISPEP 3 LYS A 225 HIS A 226 0 -8.25 CISPEP 4 PHE A 227 PRO A 228 0 3.21 CISPEP 5 ALA A 265 PRO A 266 0 -7.29 CISPEP 6 GLY B 116 PRO B 117 0 4.52 CISPEP 7 ALA B 178 PRO B 179 0 8.67 CISPEP 8 LYS B 225 HIS B 226 0 -6.96 CISPEP 9 PHE B 227 PRO B 228 0 4.31 CISPEP 10 ALA B 265 PRO B 266 0 -4.48 CRYST1 121.821 89.579 87.107 90.00 125.54 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008209 0.000000 0.005863 0.00000 SCALE2 0.000000 0.011163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014108 0.00000