HEADER PHOTOSYNTHESIS 02-MAY-18 6GG7 TITLE CYANOBACTERIAL GAPDH WITH FULL-LENGTH CP12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: B, A; COMPND 4 EC: 1.2.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CP12 POLYPEPTIDE; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: TLL1466; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1452720; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA MODIFIED; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 11 ORGANISM_TAXID: 197221; SOURCE 12 STRAIN: BP-1; SOURCE 13 GENE: CP12; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 1452720; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PRSETA MODIFIED KEYWDS CALVIN CYCLE, REGULATION, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR C.R.MCFARLANE,J.W.MURRAY REVDAT 3 17-JAN-24 6GG7 1 REMARK REVDAT 2 20-NOV-19 6GG7 1 JRNL REVDAT 1 08-MAY-19 6GG7 0 JRNL AUTH C.R.MCFARLANE,N.R.SHAH,B.V.KABASAKAL,B.ECHEVERRIA, JRNL AUTH 2 C.A.R.COTTON,D.BUBECK,J.W.MURRAY JRNL TITL STRUCTURAL BASIS OF LIGHT-INDUCED REDOX REGULATION IN THE JRNL TITL 2 CALVIN-BENSON CYCLE IN CYANOBACTERIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 20984 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31570616 JRNL DOI 10.1073/PNAS.1906722116 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 178371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 8791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.4790 - 4.1001 1.00 6071 307 0.1481 0.1669 REMARK 3 2 4.1001 - 3.2544 1.00 5826 298 0.1368 0.1591 REMARK 3 3 3.2544 - 2.8431 1.00 5769 281 0.1581 0.1798 REMARK 3 4 2.8431 - 2.5831 1.00 5723 306 0.1490 0.1725 REMARK 3 5 2.5831 - 2.3980 1.00 5707 300 0.1450 0.1650 REMARK 3 6 2.3980 - 2.2566 1.00 5684 305 0.1372 0.1651 REMARK 3 7 2.2566 - 2.1436 1.00 5687 290 0.1281 0.1723 REMARK 3 8 2.1436 - 2.0502 1.00 5671 263 0.1299 0.1538 REMARK 3 9 2.0502 - 1.9713 1.00 5667 295 0.1305 0.1536 REMARK 3 10 1.9713 - 1.9033 1.00 5633 293 0.1298 0.1506 REMARK 3 11 1.9033 - 1.8438 1.00 5672 283 0.1228 0.1624 REMARK 3 12 1.8438 - 1.7911 1.00 5646 290 0.1198 0.1652 REMARK 3 13 1.7911 - 1.7439 1.00 5610 305 0.1176 0.1420 REMARK 3 14 1.7439 - 1.7014 1.00 5627 303 0.1198 0.1667 REMARK 3 15 1.7014 - 1.6627 1.00 5603 320 0.1236 0.1631 REMARK 3 16 1.6627 - 1.6273 1.00 5623 291 0.1217 0.1624 REMARK 3 17 1.6273 - 1.5947 1.00 5603 299 0.1272 0.1700 REMARK 3 18 1.5947 - 1.5646 1.00 5639 289 0.1355 0.1788 REMARK 3 19 1.5646 - 1.5367 1.00 5625 244 0.1440 0.1742 REMARK 3 20 1.5367 - 1.5106 1.00 5616 279 0.1459 0.1935 REMARK 3 21 1.5106 - 1.4863 1.00 5633 273 0.1512 0.1772 REMARK 3 22 1.4863 - 1.4634 1.00 5584 308 0.1632 0.2132 REMARK 3 23 1.4634 - 1.4419 1.00 5592 281 0.1728 0.2113 REMARK 3 24 1.4419 - 1.4216 1.00 5612 297 0.1788 0.2244 REMARK 3 25 1.4216 - 1.4024 1.00 5553 327 0.1883 0.2230 REMARK 3 26 1.4024 - 1.3841 1.00 5599 276 0.2132 0.2495 REMARK 3 27 1.3841 - 1.3668 1.00 5611 294 0.2284 0.2628 REMARK 3 28 1.3668 - 1.3504 1.00 5592 294 0.2432 0.2683 REMARK 3 29 1.3504 - 1.3347 1.00 5539 297 0.2501 0.2725 REMARK 3 30 1.3347 - 1.3197 0.99 5563 303 0.2611 0.2835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5908 REMARK 3 ANGLE : 0.921 8081 REMARK 3 CHIRALITY : 0.078 916 REMARK 3 PLANARITY : 0.006 1049 REMARK 3 DIHEDRAL : 13.517 3333 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 178371 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 60.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.12660 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.91850 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRYPTONE CM1(A6) 1% TRYPTONE, 25% PEG, REMARK 280 100 MM HEPES PH 8., VAPOR DIFFUSION, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.96550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.52600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.52600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.94825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.52600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.52600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.98275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.52600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.52600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.94825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.52600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.52600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.98275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.96550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.96550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1109 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1126 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1300 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASN C 3 REMARK 465 LEU C 4 REMARK 465 GLU C 5 REMARK 465 LYS C 6 REMARK 465 GLN C 7 REMARK 465 ILE C 8 REMARK 465 GLU C 9 REMARK 465 GLN C 10 REMARK 465 ALA C 11 REMARK 465 ARG C 12 REMARK 465 GLU C 13 REMARK 465 GLU C 14 REMARK 465 ALA C 15 REMARK 465 HIS C 16 REMARK 465 LYS C 17 REMARK 465 ILE C 18 REMARK 465 CYS C 19 REMARK 465 ASP C 20 REMARK 465 THR C 21 REMARK 465 GLU C 22 REMARK 465 GLY C 23 REMARK 465 ALA C 24 REMARK 465 THR C 25 REMARK 465 SER C 26 REMARK 465 GLY C 27 REMARK 465 GLN C 28 REMARK 465 CYS C 29 REMARK 465 ALA C 30 REMARK 465 ALA C 31 REMARK 465 ALA C 32 REMARK 465 TRP C 33 REMARK 465 ASP C 34 REMARK 465 ALA C 35 REMARK 465 LEU C 36 REMARK 465 GLU C 37 REMARK 465 GLU C 38 REMARK 465 LEU C 39 REMARK 465 GLN C 40 REMARK 465 ALA C 41 REMARK 465 GLU C 42 REMARK 465 ALA C 43 REMARK 465 ALA C 44 REMARK 465 HIS C 45 REMARK 465 GLN C 46 REMARK 465 ARG C 47 REMARK 465 ALA C 48 REMARK 465 GLU C 49 REMARK 465 GLN C 50 REMARK 465 GLN C 51 REMARK 465 ASP C 52 REMARK 465 HIS C 53 REMARK 465 GLY A -1 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ASN D 3 REMARK 465 LEU D 4 REMARK 465 GLU D 5 REMARK 465 LYS D 6 REMARK 465 GLN D 7 REMARK 465 ILE D 8 REMARK 465 GLU D 9 REMARK 465 GLN D 10 REMARK 465 ALA D 11 REMARK 465 ARG D 12 REMARK 465 GLU D 13 REMARK 465 GLU D 14 REMARK 465 ALA D 15 REMARK 465 HIS D 16 REMARK 465 LYS D 17 REMARK 465 ILE D 18 REMARK 465 CYS D 19 REMARK 465 ASP D 20 REMARK 465 THR D 21 REMARK 465 GLU D 22 REMARK 465 GLY D 23 REMARK 465 ALA D 24 REMARK 465 THR D 25 REMARK 465 SER D 26 REMARK 465 GLY D 27 REMARK 465 GLN D 28 REMARK 465 CYS D 29 REMARK 465 ALA D 30 REMARK 465 ALA D 31 REMARK 465 ALA D 32 REMARK 465 TRP D 33 REMARK 465 ASP D 34 REMARK 465 ALA D 35 REMARK 465 LEU D 36 REMARK 465 GLU D 37 REMARK 465 GLU D 38 REMARK 465 LEU D 39 REMARK 465 GLN D 40 REMARK 465 ALA D 41 REMARK 465 GLU D 42 REMARK 465 ALA D 43 REMARK 465 ALA D 44 REMARK 465 HIS D 45 REMARK 465 GLN D 46 REMARK 465 ARG D 47 REMARK 465 ALA D 48 REMARK 465 GLU D 49 REMARK 465 GLN D 50 REMARK 465 GLN D 51 REMARK 465 ASP D 52 REMARK 465 HIS D 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 9 56.60 -98.02 REMARK 500 PRO B 87 45.53 -84.81 REMARK 500 PHE B 103 58.41 -116.55 REMARK 500 THR B 123 49.75 -86.53 REMARK 500 ASN B 138 15.53 -142.56 REMARK 500 ALA B 152 -160.25 60.93 REMARK 500 VAL B 241 130.99 89.35 REMARK 500 THR B 269 -97.30 -134.73 REMARK 500 PHE A 9 58.39 -97.00 REMARK 500 ASP A 64 -159.41 -127.68 REMARK 500 PRO A 87 45.17 -86.59 REMARK 500 PHE A 103 60.16 -116.89 REMARK 500 THR A 123 48.68 -85.81 REMARK 500 ASN A 138 13.84 -143.12 REMARK 500 ALA A 152 -158.47 61.05 REMARK 500 VAL A 241 130.66 88.92 REMARK 500 THR A 269 -93.34 -131.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1368 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A1361 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1362 DISTANCE = 6.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 1001 DBREF 6GG7 B 1 337 UNP Q8DIW5 Q8DIW5_THEEB 1 337 DBREF 6GG7 C 1 75 UNP Q8DHX3 Q8DHX3_THEEB 1 75 DBREF 6GG7 A 1 337 UNP Q8DIW5 Q8DIW5_THEEB 1 337 DBREF 6GG7 D 1 75 UNP Q8DHX3 Q8DHX3_THEEB 1 75 SEQADV 6GG7 GLY B -1 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GG7 SER B 0 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GG7 GLY C -1 UNP Q8DHX3 EXPRESSION TAG SEQADV 6GG7 SER C 0 UNP Q8DHX3 EXPRESSION TAG SEQADV 6GG7 GLY A -1 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GG7 SER A 0 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GG7 GLY D -1 UNP Q8DHX3 EXPRESSION TAG SEQADV 6GG7 SER D 0 UNP Q8DHX3 EXPRESSION TAG SEQRES 1 B 339 GLY SER MET VAL ARG VAL ALA ILE ASN GLY PHE GLY ARG SEQRES 2 B 339 ILE GLY ARG ASN PHE MET ARG CYS TRP LEU GLN ARG LYS SEQRES 3 B 339 ALA ASN SER LYS LEU GLU ILE VAL GLY ILE ASN ASP THR SEQRES 4 B 339 SER ASP PRO ARG THR ASN ALA HIS LEU LEU LYS TYR ASP SEQRES 5 B 339 SER MET LEU GLY ILE PHE GLN ASP ALA GLU ILE THR ALA SEQRES 6 B 339 ASP ASP ASP CYS ILE TYR ALA GLY GLY HIS ALA VAL LYS SEQRES 7 B 339 CYS VAL SER ASP ARG ASN PRO GLU ASN LEU PRO TRP SER SEQRES 8 B 339 ALA TRP GLY ILE ASP LEU VAL ILE GLU ALA THR GLY VAL SEQRES 9 B 339 PHE THR SER ARG GLU GLY ALA SER LYS HIS LEU SER ALA SEQRES 10 B 339 GLY ALA LYS LYS VAL LEU ILE THR ALA PRO GLY LYS GLY SEQRES 11 B 339 ASN ILE PRO THR TYR VAL VAL GLY VAL ASN HIS HIS THR SEQRES 12 B 339 TYR ASP PRO SER GLU ASP ILE VAL SER ASN ALA SER CYS SEQRES 13 B 339 THR THR ASN CYS LEU ALA PRO ILE VAL LYS VAL LEU HIS SEQRES 14 B 339 GLU ALA PHE GLY ILE GLN GLN GLY MET MET THR THR THR SEQRES 15 B 339 HIS SER TYR THR GLY ASP GLN ARG LEU LEU ASP ALA SER SEQRES 16 B 339 HIS ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA MET ASN SEQRES 17 B 339 ILE VAL PRO THR SER THR GLY ALA ALA LYS ALA VAL GLY SEQRES 18 B 339 LEU VAL ILE PRO GLU LEU GLN GLY LYS LEU ASN GLY ILE SEQRES 19 B 339 ALA LEU ARG VAL PRO THR PRO ASN VAL SER VAL VAL ASP SEQRES 20 B 339 PHE VAL ALA GLN VAL GLU LYS PRO THR ILE ALA GLU GLN SEQRES 21 B 339 VAL ASN GLN VAL ILE LYS GLU ALA SER GLU THR THR MET SEQRES 22 B 339 LYS GLY ILE ILE HIS TYR SER GLU LEU GLU LEU VAL SER SEQRES 23 B 339 SER ASP TYR ARG GLY HIS ASN ALA SER SER ILE LEU ASP SEQRES 24 B 339 ALA SER LEU THR MET VAL LEU GLY GLY ASN LEU VAL LYS SEQRES 25 B 339 VAL VAL ALA TRP TYR ASP ASN GLU TRP GLY TYR SER GLN SEQRES 26 B 339 ARG VAL LEU ASP LEU ALA GLU HIS MET ALA ALA HIS TRP SEQRES 27 B 339 ALA SEQRES 1 C 77 GLY SER MET SER ASN LEU GLU LYS GLN ILE GLU GLN ALA SEQRES 2 C 77 ARG GLU GLU ALA HIS LYS ILE CYS ASP THR GLU GLY ALA SEQRES 3 C 77 THR SER GLY GLN CYS ALA ALA ALA TRP ASP ALA LEU GLU SEQRES 4 C 77 GLU LEU GLN ALA GLU ALA ALA HIS GLN ARG ALA GLU GLN SEQRES 5 C 77 GLN ASP HIS LYS THR SER PHE GLN GLN TYR CYS ASP ASP SEQRES 6 C 77 ASN PRO ASP ALA ALA GLU CYS ARG ILE TYR ASP ASP SEQRES 1 A 339 GLY SER MET VAL ARG VAL ALA ILE ASN GLY PHE GLY ARG SEQRES 2 A 339 ILE GLY ARG ASN PHE MET ARG CYS TRP LEU GLN ARG LYS SEQRES 3 A 339 ALA ASN SER LYS LEU GLU ILE VAL GLY ILE ASN ASP THR SEQRES 4 A 339 SER ASP PRO ARG THR ASN ALA HIS LEU LEU LYS TYR ASP SEQRES 5 A 339 SER MET LEU GLY ILE PHE GLN ASP ALA GLU ILE THR ALA SEQRES 6 A 339 ASP ASP ASP CYS ILE TYR ALA GLY GLY HIS ALA VAL LYS SEQRES 7 A 339 CYS VAL SER ASP ARG ASN PRO GLU ASN LEU PRO TRP SER SEQRES 8 A 339 ALA TRP GLY ILE ASP LEU VAL ILE GLU ALA THR GLY VAL SEQRES 9 A 339 PHE THR SER ARG GLU GLY ALA SER LYS HIS LEU SER ALA SEQRES 10 A 339 GLY ALA LYS LYS VAL LEU ILE THR ALA PRO GLY LYS GLY SEQRES 11 A 339 ASN ILE PRO THR TYR VAL VAL GLY VAL ASN HIS HIS THR SEQRES 12 A 339 TYR ASP PRO SER GLU ASP ILE VAL SER ASN ALA SER CYS SEQRES 13 A 339 THR THR ASN CYS LEU ALA PRO ILE VAL LYS VAL LEU HIS SEQRES 14 A 339 GLU ALA PHE GLY ILE GLN GLN GLY MET MET THR THR THR SEQRES 15 A 339 HIS SER TYR THR GLY ASP GLN ARG LEU LEU ASP ALA SER SEQRES 16 A 339 HIS ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA MET ASN SEQRES 17 A 339 ILE VAL PRO THR SER THR GLY ALA ALA LYS ALA VAL GLY SEQRES 18 A 339 LEU VAL ILE PRO GLU LEU GLN GLY LYS LEU ASN GLY ILE SEQRES 19 A 339 ALA LEU ARG VAL PRO THR PRO ASN VAL SER VAL VAL ASP SEQRES 20 A 339 PHE VAL ALA GLN VAL GLU LYS PRO THR ILE ALA GLU GLN SEQRES 21 A 339 VAL ASN GLN VAL ILE LYS GLU ALA SER GLU THR THR MET SEQRES 22 A 339 LYS GLY ILE ILE HIS TYR SER GLU LEU GLU LEU VAL SER SEQRES 23 A 339 SER ASP TYR ARG GLY HIS ASN ALA SER SER ILE LEU ASP SEQRES 24 A 339 ALA SER LEU THR MET VAL LEU GLY GLY ASN LEU VAL LYS SEQRES 25 A 339 VAL VAL ALA TRP TYR ASP ASN GLU TRP GLY TYR SER GLN SEQRES 26 A 339 ARG VAL LEU ASP LEU ALA GLU HIS MET ALA ALA HIS TRP SEQRES 27 A 339 ALA SEQRES 1 D 77 GLY SER MET SER ASN LEU GLU LYS GLN ILE GLU GLN ALA SEQRES 2 D 77 ARG GLU GLU ALA HIS LYS ILE CYS ASP THR GLU GLY ALA SEQRES 3 D 77 THR SER GLY GLN CYS ALA ALA ALA TRP ASP ALA LEU GLU SEQRES 4 D 77 GLU LEU GLN ALA GLU ALA ALA HIS GLN ARG ALA GLU GLN SEQRES 5 D 77 GLN ASP HIS LYS THR SER PHE GLN GLN TYR CYS ASP ASP SEQRES 6 D 77 ASN PRO ASP ALA ALA GLU CYS ARG ILE TYR ASP ASP HET NAD B1001 44 HET NAD A1001 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 HOH *564(H2 O) HELIX 1 AA1 GLY B 10 ARG B 23 1 14 HELIX 2 AA2 LYS B 24 SER B 27 5 4 HELIX 3 AA3 ASP B 39 LYS B 48 1 10 HELIX 4 AA4 ASN B 82 LEU B 86 5 5 HELIX 5 AA5 SER B 105 ALA B 115 1 11 HELIX 6 AA6 ASN B 138 TYR B 142 5 5 HELIX 7 AA7 SER B 153 GLY B 171 1 19 HELIX 8 AA8 ALA B 202 ASN B 206 5 5 HELIX 9 AA9 GLY B 213 ILE B 222 1 10 HELIX 10 AB1 PRO B 223 GLN B 226 5 4 HELIX 11 AB2 ILE B 255 THR B 269 1 15 HELIX 12 AB3 VAL B 283 ARG B 288 5 6 HELIX 13 AB4 SER B 299 THR B 301 5 3 HELIX 14 AB5 GLU B 318 HIS B 335 1 18 HELIX 15 AB6 THR C 55 ASN C 64 1 10 HELIX 16 AB7 GLY A 10 LYS A 24 1 15 HELIX 17 AB8 ALA A 25 SER A 27 5 3 HELIX 18 AB9 ASP A 39 TYR A 49 1 11 HELIX 19 AC1 ASN A 82 LEU A 86 5 5 HELIX 20 AC2 SER A 105 ALA A 115 1 11 HELIX 21 AC3 ASN A 138 TYR A 142 5 5 HELIX 22 AC4 SER A 153 GLY A 171 1 19 HELIX 23 AC5 ALA A 202 ASN A 206 5 5 HELIX 24 AC6 GLY A 213 ILE A 222 1 10 HELIX 25 AC7 PRO A 223 GLN A 226 5 4 HELIX 26 AC8 ILE A 255 THR A 269 1 15 HELIX 27 AC9 VAL A 283 ARG A 288 5 6 HELIX 28 AD1 SER A 299 THR A 301 5 3 HELIX 29 AD2 GLU A 318 HIS A 335 1 18 HELIX 30 AD3 THR D 55 ASN D 64 1 10 SHEET 1 AA1 8 ILE B 61 ALA B 63 0 SHEET 2 AA1 8 CYS B 67 ALA B 70 -1 O TYR B 69 N THR B 62 SHEET 3 AA1 8 HIS B 73 VAL B 78 -1 O VAL B 75 N ILE B 68 SHEET 4 AA1 8 LEU B 29 ASN B 35 1 N ILE B 34 O LYS B 76 SHEET 5 AA1 8 VAL B 2 ASN B 7 1 N VAL B 4 O GLU B 30 SHEET 6 AA1 8 LEU B 95 GLU B 98 1 O ILE B 97 N ASN B 7 SHEET 7 AA1 8 LYS B 119 ILE B 122 1 O LEU B 121 N VAL B 96 SHEET 8 AA1 8 ILE B 148 SER B 150 1 O VAL B 149 N ILE B 122 SHEET 1 AA2 2 TYR B 49 ASP B 50 0 SHEET 2 AA2 2 GLY B 54 ILE B 55 -1 O GLY B 54 N ASP B 50 SHEET 1 AA3 7 VAL B 208 SER B 211 0 SHEET 2 AA3 7 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA3 7 ILE B 172 SER B 182 1 N THR B 179 O LEU B 234 SHEET 4 AA3 7 SER B 242 VAL B 250 -1 O GLN B 249 N GLN B 173 SHEET 5 AA3 7 LEU B 308 TYR B 315 -1 O ALA B 313 N VAL B 244 SHEET 6 AA3 7 SER B 294 ASP B 297 -1 N ASP B 297 O VAL B 312 SHEET 7 AA3 7 ILE B 275 SER B 278 1 N HIS B 276 O SER B 294 SHEET 1 AA4 6 VAL B 208 SER B 211 0 SHEET 2 AA4 6 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA4 6 ILE B 172 SER B 182 1 N THR B 179 O LEU B 234 SHEET 4 AA4 6 SER B 242 VAL B 250 -1 O GLN B 249 N GLN B 173 SHEET 5 AA4 6 LEU B 308 TYR B 315 -1 O ALA B 313 N VAL B 244 SHEET 6 AA4 6 MET B 302 LEU B 304 -1 N MET B 302 O LYS B 310 SHEET 1 AA5 8 ILE A 61 ALA A 63 0 SHEET 2 AA5 8 CYS A 67 ALA A 70 -1 O TYR A 69 N THR A 62 SHEET 3 AA5 8 HIS A 73 VAL A 78 -1 O VAL A 75 N ILE A 68 SHEET 4 AA5 8 LEU A 29 ASN A 35 1 N VAL A 32 O LYS A 76 SHEET 5 AA5 8 VAL A 2 ASN A 7 1 N VAL A 4 O GLU A 30 SHEET 6 AA5 8 LEU A 95 GLU A 98 1 O ILE A 97 N ASN A 7 SHEET 7 AA5 8 LYS A 119 ILE A 122 1 O LEU A 121 N VAL A 96 SHEET 8 AA5 8 ILE A 148 SER A 150 1 O VAL A 149 N ILE A 122 SHEET 1 AA6 7 VAL A 208 SER A 211 0 SHEET 2 AA6 7 LEU A 229 VAL A 236 -1 O ARG A 235 N VAL A 208 SHEET 3 AA6 7 ILE A 172 SER A 182 1 N THR A 179 O LEU A 234 SHEET 4 AA6 7 SER A 242 VAL A 250 -1 O GLN A 249 N GLN A 174 SHEET 5 AA6 7 LEU A 308 TYR A 315 -1 O ALA A 313 N VAL A 244 SHEET 6 AA6 7 SER A 294 ASP A 297 -1 N ASP A 297 O VAL A 312 SHEET 7 AA6 7 ILE A 275 SER A 278 1 N HIS A 276 O SER A 294 SHEET 1 AA7 6 VAL A 208 SER A 211 0 SHEET 2 AA7 6 LEU A 229 VAL A 236 -1 O ARG A 235 N VAL A 208 SHEET 3 AA7 6 ILE A 172 SER A 182 1 N THR A 179 O LEU A 234 SHEET 4 AA7 6 SER A 242 VAL A 250 -1 O GLN A 249 N GLN A 174 SHEET 5 AA7 6 LEU A 308 TYR A 315 -1 O ALA A 313 N VAL A 244 SHEET 6 AA7 6 MET A 302 LEU A 304 -1 N MET A 302 O LYS A 310 SSBOND 1 CYS C 61 CYS C 70 1555 1555 2.06 SSBOND 2 CYS D 61 CYS D 70 1555 1555 2.04 SITE 1 AC1 34 HOH A1194 GLY B 8 PHE B 9 GLY B 10 SITE 2 AC1 34 ARG B 11 ILE B 12 ASN B 35 ASP B 36 SITE 3 AC1 34 THR B 37 ARG B 81 ALA B 99 THR B 100 SITE 4 AC1 34 GLY B 101 PHE B 103 THR B 123 ALA B 124 SITE 5 AC1 34 CYS B 154 ASN B 317 TYR B 321 HOH B1135 SITE 6 AC1 34 HOH B1136 HOH B1160 HOH B1172 HOH B1180 SITE 7 AC1 34 HOH B1193 HOH B1202 HOH B1230 HOH B1234 SITE 8 AC1 34 ASP C 66 ARG C 71 TYR C 73 HOH C 105 SITE 9 AC1 34 HOH C 110 HOH D 110 SITE 1 AC2 33 GLY A 8 PHE A 9 GLY A 10 ARG A 11 SITE 2 AC2 33 ILE A 12 ASN A 35 ASP A 36 THR A 37 SITE 3 AC2 33 ARG A 81 ALA A 99 THR A 100 GLY A 101 SITE 4 AC2 33 PHE A 103 THR A 123 ALA A 124 CYS A 154 SITE 5 AC2 33 ASN A 317 TYR A 321 HOH A1139 HOH A1140 SITE 6 AC2 33 HOH A1147 HOH A1159 HOH A1181 HOH A1206 SITE 7 AC2 33 HOH A1221 HOH A1229 HOH A1230 HOH A1235 SITE 8 AC2 33 HOH C 109 ASP D 66 TYR D 73 HOH D 108 SITE 9 AC2 33 HOH D 113 CRYST1 141.052 141.052 75.931 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013170 0.00000